scholarly article | Q13442814 |
P50 | author | Janusz Bujnicki | Q11720088 |
Tadeusz Kaczorowski | Q76375400 | ||
Joanna Nakonieczna | Q114455214 | ||
P2093 | author name string | Agnieszka Obarska-Kosinska | |
P2860 | cites work | Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease | Q24535057 |
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage | Q24616834 | ||
Structure of FokI has implications for DNA cleavage | Q24657897 | ||
Topology of Type II REases revisited; structural classes and the common conserved core | Q24682798 | ||
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes | Q24684053 | ||
REBASE--enzymes and genes for DNA restriction and modification | Q24684227 | ||
A homology model of restriction endonuclease SfiI in complex with DNA | Q24800162 | ||
FFAS03: a server for profile--profile sequence alignments | Q24812677 | ||
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function | Q24815060 | ||
Natural history of S-adenosylmethionine-binding proteins | Q24816614 | ||
Novel protein fold discovered in the PabI family of restriction enzymes | Q27643963 | ||
Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing | Q27685433 | ||
The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments | Q27732162 | ||
Serial analysis of gene expression | Q27860777 | ||
Protein homology detection by HMM-HMM comparison | Q28292161 | ||
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions | Q29616398 | ||
Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level | Q30014824 | ||
Pcons: a neural-network-based consensus predictor that improves fold recognition. | Q30328734 | ||
Can correct protein models be identified? | Q30332785 | ||
GeneSilico protein structure prediction meta-server. | Q30333042 | ||
COLORADO3D, a web server for the visual analysis of protein structures. | Q30341998 | ||
FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6. | Q30351469 | ||
MetaMQAP: a meta-server for the quality assessment of protein models. | Q30372323 | ||
Molecular evolution of DNA-(cytosine-N4) methyltransferases: evidence for their polyphyletic origin | Q30583278 | ||
SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories | Q30612214 | ||
Genomic signature tags (GSTs): a system for profiling genomic DNA. | Q30868853 | ||
A model of restriction endonuclease MvaI in complex with DNA: a template for interpretation of experimental data and a guide for specificity engineering | Q31108068 | ||
Specificity changes in the evolution of type II restriction endonucleases: a biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences | Q33209323 | ||
A high throughput method for genome-wide analysis of retroviral integration. | Q33259719 | ||
Discarding duplicate ditags in LongSAGE analysis may introduce significant error | Q33278626 | ||
Mutations the confer de Novo activity upon a maintenance methyltransferase | Q33323418 | ||
Sequence motifs specific for cytosine methyltransferases | Q34170996 | ||
Complex restriction enzymes: NTP-driven molecular motors | Q34178514 | ||
Mechanisms of coupling between DNA recognition specificity and catalysis in EcoRI endonuclease | Q34354641 | ||
Type II restriction endonucleases: structure and mechanism | Q34555997 | ||
Construction of plasmids carrying the cI gene of bacteriophage lambda | Q35037655 | ||
Crystallographic and Bioinformatic Studies on Restriction Endonucleases: Inference of Evolutionary Relationships in the “Midnight Zone” of Homology | Q35552229 | ||
Sequence-specific recognition of double helical nucleic acids by proteins | Q35987597 | ||
Introduction of asymmetry in the naturally symmetric restriction endonuclease EcoRV to investigate intersubunit communication in the homodimeric protein | Q37577354 | ||
PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes | Q38353751 | ||
Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses | Q39634823 | ||
The 'endo-blue method' for direct cloning of restriction endonuclease genes in E. coli. | Q40229405 | ||
Isolation and computer-aided characterization of MmeI, a type II restriction endonuclease from Methylophilus methylotrophus | Q40417410 | ||
A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation | Q40553690 | ||
A symmetrical model for the domain structure of type I DNA methyltransferases | Q40636115 | ||
Structural model for the multisubunit Type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA. | Q42062102 | ||
Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles | Q42643104 | ||
Identification of correct regions in protein models using structural, alignment, and consensus information | Q43043597 | ||
Crystallization and preliminary crystallographic studies of a bifunctional restriction endonuclease Eco57I. | Q44889399 | ||
Improvement of the GenTHREADER method for genomic fold recognition | Q45145874 | ||
Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes | Q48069333 | ||
Binding of MmeI restriction-modification enzyme to its specific recognition sequence is stimulated by S-adenosyl-L-methionine. | Q53523781 | ||
Asn141 is essential for DNA recognition by EcoRI restriction endonuclease. | Q53957720 | ||
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage | Q55043499 | ||
Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures | Q56901954 | ||
Essential arginyl residues in Escherichia coli alkaline phosphatase | Q69352690 | ||
MmeI, a class-IIS restriction endonuclease: Purification and characterization | Q71866648 | ||
Five-stranded beta-sheet sandwiched with two alpha-helices: a structural link between restriction endonucleases EcoRI and EcoRV | Q72635015 | ||
Comparison of protein structures reveals monophyletic origin of the AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation | Q74294989 | ||
Two intertwined methylation activities of the MmeI restriction-modification class-IIS system from Methylophilus methylotrophus | Q77702970 | ||
On the structure and operation of type I DNA restriction enzymes | Q77950115 | ||
P433 | issue | 1 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 212-223 | |
P577 | publication date | 2008-11-07 | |
P1433 | published in | Applied and Environmental Microbiology | Q4781593 |
P1476 | title | Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes | |
P478 | volume | 75 |
Q58697427 | A model for the evolution of prokaryotic DNA restriction-modification systems based upon the structural malleability of Type I restriction-modification enzymes |
Q33456218 | Cloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family |
Q35620859 | Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine |
Q35539178 | Crystallization and preliminary crystallographic analysis of the type IIL restriction enzyme MmeI in complex with DNA |
Q37698622 | Diversity of DNA methyltransferases that recognize asymmetric target sequences |
Q55359800 | Engineering altered protein-DNA recognition specificity. |
Q33811245 | Fused eco29kIR- and M genes coding for a fully functional hybrid polypeptide as a model of molecular evolution of restriction-modification systems |
Q35315461 | Genome-wide DNA methylation analysis of Haloferax volcanii H26 and identification of DNA methyltransferase related PD-(D/E)XK nuclease family protein HVO_A0006. |
Q42072101 | Rational engineering of type II restriction endonuclease DNA binding and cleavage specificity |
Q31054232 | Related bifunctional restriction endonuclease-methyltransferase triplets: TspDTI, Tth111II/TthHB27I and TsoI with distinct specificities |
Q34244324 | Structure and operation of the DNA-translocating type I DNA restriction enzymes |
Q35991119 | Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities. |
Q34990708 | The MmeI family: type II restriction-modification enzymes that employ single-strand modification for host protection |
Q38143721 | Type I restriction enzymes and their relatives. |
Q33843093 | Type II restriction endonucleases--a historical perspective and more |
Search more.