Structure and operation of the DNA-translocating type I DNA restriction enzymes

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Structure and operation of the DNA-translocating type I DNA restriction enzymes is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1101/GAD.179085.111
P932PMC publication ID3258970
P698PubMed publication ID22215814

P50authorJanusz BujnickiQ11720088
William V. NicholsonQ41779114
Wojciech PotrzebowskiQ54051851
James E. TaylorQ54051898
P2093author name stringDavid T F Dryden
Chun Feng Song
John Trinick
Gareth A Roberts
John H White
Laurie P Cooper
Anna Swiderska
G Geoff Kneale
Philip Callow
Agnieszka Obarska-Kosinska
Jean-Baptiste Artero
Christopher K Kennaway
P2860cites workRestoring low resolution structure of biological macromolecules from solution scattering using simulated annealingQ24537302
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REBASE--a database for DNA restriction and modification: enzymes, genes and genomesQ24644735
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genesQ24684053
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The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction proteinQ27653121
Structure of the motor subunit of type I restriction-modification complex EcoR124IQ27653140
Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistanceQ27655819
The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activityQ27656647
Structure of HsdS Subunit from Thermoanaerobacter tengcongensis Sheds Lights on Mechanism of Dynamic Opening and Closing of Type I MethyltransferaseQ27667266
Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSIQ27670651
X-Ray Structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase Core and Its Complex with DNAQ29400687
Motor step size and ATP coupling efficiency of the dsDNA translocase EcoR124I.Q30481641
Tracking EcoKI and DNA fifty years on: a golden story full of surprisesQ31030715
Model for how type I restriction enzymes select cleavage sites in DNA.Q33584495
Fused eco29kIR- and M genes coding for a fully functional hybrid polypeptide as a model of molecular evolution of restriction-modification systemsQ33811245
Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implicationsQ33858629
HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modellingQ33885645
Macroevolution by transposition: drastic modification of DNA recognition by a type I restriction enzyme following Tn5 transpositionQ34069195
DNA Restriction Enzyme from E. coliQ34220586
Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNAQ34490497
Architecture of the DNA polymerase B-proliferating cell nuclear antigen (PCNA)-DNA ternary complexQ34550038
Conservation of organization in the specificity polypeptides of two families of type I restriction enzymesQ35597794
Negative staining of myosin molecules.Q54648280
A Map of Protein-rRNA Distribution in the 70 SEscherichia coliRibosomeQ57091098
Assembly of EcoKI DNA methyltransferase requires the C-terminal region of the HsdM modification subunitQ58212694
DNA structure: evidence from electron microscopyQ67346834
Structural modelling of a type I DNA methyltransferaseQ71726980
Probing the domain structure of the type IC DNA methyltransferase M.EcoR124I by limited proteolysisQ71871318
DNA translocation by the restriction enzyme from E. coli KQ72855531
The in vitro assembly of the EcoKI type I DNA restriction/modification enzyme and its in vivo implicationsQ73073796
On the structure and operation of type I DNA restriction enzymesQ77950115
Crystal structure of a putative type I restriction-modification S subunit from Mycoplasma genitaliumQ80415317
Increased protein flexibility leads to promiscuous protein-DNA interactions in type IC restriction-modification systemsQ35923842
The biology of restriction and anti-restrictionQ36175695
Host specificity of DNA produced by Escherichia coli, X. In vitro restriction of phage fd replicative formQ36471251
Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI.Q36541346
Genetic recombination can generate altered restriction specificityQ37570816
Diversity of DNA methyltransferases that recognize asymmetric target sequencesQ37698622
Continuous assays for DNA translocation using fluorescent triplex dissociation: application to type I restriction endonucleases.Q38327753
Purification and biochemical characterisation of theEcoR124 type I modification methylaseQ38330901
Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzymeQ38331751
Protein-protein and protein-DNA interactions in the type I restriction endonuclease R.EcoR124I.Q38336583
Recycling of protein subunits during DNA translocation and cleavage by Type I restriction-modification enzymesQ38535176
An investigation of the structural requirements for ATP hydrolysis and DNA cleavage by the EcoKI Type I DNA restriction and modification enzymeQ38535190
Interaction of the ocr gene 0.3 protein of bacteriophage T7 with EcoKI restriction/modification enzymeQ39687086
Analysis of the subunit assembly of the typeIC restriction-modification enzyme EcoR124IQ39725150
A deletion mutant of the type IC restriction endonuclease EcoR1241 expressing a novel DNA specificityQ40415571
A symmetrical model for the domain structure of type I DNA methyltransferasesQ40636115
Structural and functional analysis of the engineered type I DNA methyltransferase EcoR124I(NT)Q40790792
DNA-binding induces a major structural transition in a type I methyltransferase.Q40794101
Shape and subunit organisation of the DNA methyltransferase M.AhdI by small-angle neutron scatteringQ40817110
Initiation of translocation by Type I restriction-modification enzymes is associated with a short DNA extrusionQ40938302
Fusion of GFP to the M.EcoKI DNA methyltransferase produces a new probe of Type I DNA restriction and modification enzymesQ41860229
Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineagesQ41919962
Structural model for the multisubunit Type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA.Q42062102
Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymesQ42965698
Atomic force microscopy of the EcoKI Type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA loopingQ43150435
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.Q43959489
Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease?Q44677343
Conservation of complex DNA recognition domains between families of restriction enzymesQ44918995
A mutational analysis of DNA mimicry by ocr, the gene 0.3 antirestriction protein of bacteriophage T7.Q46243023
Reassortment of DNA recognition domains and the evolution of new specificitiesQ48342551
2001 Fred Griffith review lecture. Immigration control of DNA in bacteria: self versus non-selfQ48575149
The DNA restriction endonuclease of Escherichia coli B. I. Studies of the DNA translocation and the ATPase activities.Q50803849
Plasmid-encoded antirestriction protein ArdA can discriminate between type I methyltransferase and complete restriction-modification system.Q51112275
The domains of a type I DNA methyltransferase. Interactions and role in recognition of DNA methylation.Q54638027
P433issue1
P304page(s)92-104
P577publication date2012-01-01
P1433published inGenes & DevelopmentQ1524533
P1476titleStructure and operation of the DNA-translocating type I DNA restriction enzymes
P478volume26

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cites work (P2860)
Q58697427A model for the evolution of prokaryotic DNA restriction-modification systems based upon the structural malleability of Type I restriction-modification enzymes
Q38557995ArdA proteins from different mobile genetic elements can bind to the EcoKI Type I DNA methyltransferase of E. coli K12.
Q36414773Assembly of macromolecular complexes by satisfaction of spatial restraints from electron microscopy images
Q37685294Cloning, crystallization and preliminary X-ray diffraction analysis of an intact DNA methyltransferase of a type I restriction-modification enzyme from Vibrio vulnificus
Q41986732ClpXP protease targets long-lived DNA translocation states of a helicase-like motor to cause restriction alleviation
Q90578974Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding
Q40339297DNA target recognition domains in the Type I restriction and modification systems of Staphylococcus aureus
Q30437069Efficient and accurate whole genome assembly and methylome profiling of E. coli
Q36228535Exploring the DNA mimicry of the Ocr protein of phage T7.
Q35651000Functional coupling of duplex translocation to DNA cleavage in a type I restriction enzyme
Q38154090Highlights of the DNA cutters: a short history of the restriction enzymes
Q45982664How bacteria control the CRISPR-Cas arsenal.
Q34774529Impact of target site distribution for Type I restriction enzymes on the evolution of methicillin-resistant Staphylococcus aureus (MRSA) populations
Q35890651In vitro analysis of phosphorothioate modification of DNA reveals substrate recognition by a multiprotein complex
Q43201166Molecular architecture of the Ub-PCNA/Pol η complex bound to DNA.
Q41429735Organization of the BcgI restriction-modification protein for the cleavage of eight phosphodiester bonds in DNA.
Q41429898Organization of the BcgI restriction-modification protein for the transfer of one methyl group to DNA.
Q92133188Phages build anti-defence barriers
Q41781549Removal of a frameshift between the hsdM and hsdS genes of the EcoKI Type IA DNA restriction and modification system produces a new type of system and links the different families of Type I systems
Q41868942Solution conformations of early intermediates in Mos1 transposition
Q34228621Structural and functional analysis of the symmetrical Type I restriction endonuclease R.EcoR124I(NT).
Q89625910Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7
Q47916813Structural basis underlying complex assembly and conformational transition of the type I R-M system
Q96126831Structural insights into assembly, operation and inhibition of a type I restriction-modification system
Q58611623Structure, subunit organization and behavior of the asymmetric Type IIT restriction endonuclease BbvCI
Q50016289Structures of the type I DNA restriction enzymes
Q39755634The Type I Restriction Enzymes as Barriers to Horizontal Gene Transfer: Determination of the DNA Target Sequences Recognised by Livestock-Associated Methicillin-Resistant Staphylococcus aureus Clonal Complexes 133/ST771 and 398.
Q40791286The evolutionary pathway from a biologically inactive polypeptide sequence to a folded, active structural mimic of DNA
Q38992836The helical domain of the EcoR124I motor subunit participates in ATPase activity and dsDNA translocation.
Q27312374Translocation-coupled DNA cleavage by the Type ISP restriction-modification enzymes
Q38143721Type I restriction enzymes and their relatives.
Q33843093Type II restriction endonucleases--a historical perspective and more
Q39095250Type III restriction endonucleases are heterotrimeric: comprising one helicase-nuclease subunit and a dimeric methyltransferase that binds only one specific DNA.

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