One recognition sequence, seven restriction enzymes, five reaction mechanisms.

scientific article published on 29 June 2004

One recognition sequence, seven restriction enzymes, five reaction mechanisms. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/GKH685
P932PMC publication ID443551
P698PubMed publication ID15226412
P5875ResearchGate publication ID8482872

P50authorDarren M GowersQ61865872
P2093author name stringStephen E Halford
Stuart R W Bellamy
P2860cites workPspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymesQ38353751
The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centreQ38357645
Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genomeQ39584191
Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoilingQ39738169
Diversity of type II restriction endonucleases that require two DNA recognition sitesQ40240500
One- and three-dimensional pathways for proteins to reach specific DNA sitesQ40388353
Structure and function of restriction endonucleasesQ40540883
EcoRII can be activated to cleave refractory DNA recognition sitesQ40545771
Recombination by resolvase to analyse DNA communications by the SfiI restriction endonucleaseQ41064313
Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates.Q41078620
Cloning and sequencing the HinfI restriction and modification genesQ42653249
Ability of DNA and spermidine to affect the activity of restriction endonucleases from several bacterial speciesQ43886671
Generation of the BfiI restriction endonuclease from the fusion of a DNA recognition domain to a non-specific nuclease from the phospholipase D superfamilyQ44740553
DNA excision by the Sfi I restriction endonucleaseQ47708855
Subunit assembly for DNA cleavage by restriction endonuclease SgrAI.Q54528761
Evolutionary relationship between different subgroups of restriction endonucleasesQ56900882
Plasmid DNA Cleavage byMunI Restriction Enzyme: Single-Turnover and Steady-State Kinetic Analysis†Q57267696
The Cfr10I restriction enzyme is functional as a tetramerQ60500600
The kinetic mechanism of EcoRI endonucleaseQ64388761
The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complexQ67731871
DNA cleavage at two recognition sites by the SfiI restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sitesQ71751602
The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequenceQ72241576
Reactions of BglI and other type II restriction endonucleases with discontinuous recognition sitesQ73509790
Communications between distant sites on supercoiled DNA from non-exponential kinetics for DNA synapsis by resolvaseQ73545861
Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loopsQ73794058
DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sitesQ74328897
Hopping, jumping and looping by restriction enzymesQ74347698
Does BcgI, a unique restriction endonuclease, require two recognition sites for cleavage?Q74653661
The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequenceQ77309135
Alternative arrangements of catalytic residues at the active sites of restriction enzymesQ78067597
Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequenceQ24514776
Structure and function of type II restriction endonucleasesQ24555230
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genesQ24684053
Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectorsQ26778475
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNAQ27626779
Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangementQ27633648
Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonucleaseQ33847038
DNA nicks inflicted by restriction endonucleases are repaired by a RecA- and RecB-dependent pathway in Escherichia coliQ33876047
Reactions of type II restriction endonucleases with 8-base pair recognition sitesQ33883325
Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.Q34103727
Organization of restriction-modification systemsQ34111928
Complex restriction enzymes: NTP-driven molecular motorsQ34178514
Evidence for an evolutionary relationship among type-II restriction endonucleasesQ34301710
Fidelity of DNA recognition by the EcoRV restriction/modification system in vivoQ34631053
How the Bfi I restriction enzyme uses one active site to cut two DNA strandsQ35143107
REBASE: restriction enzymes and methyltransferasesQ35158752
Enzyme-mediated DNA loopingQ35771536
Comparison of the nucleotide and amino acid sequences of the RsrI and EcoRI restriction endonucleasesQ35949088
DNA binding and recognition by the IIs restriction endonuclease MboII.Q38295631
Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium.Q38310779
Use of specific oligonucleotide duplexes to stimulate cleavage of refractory DNA sites by restriction endonucleasesQ38321306
Specificity from the synapsis of DNA elements by the Sfi I endonucleaseQ38323728
Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequenceQ38333398
Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease.Q38344915
P433issue11
P304page(s)3469-3479
P577publication date2004-06-29
P1433published inNucleic Acids ResearchQ135122
P1476titleOne recognition sequence, seven restriction enzymes, five reaction mechanisms
P478volume32

Reverse relations

cites work (P2860)
Q33871185A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI)
Q40244890A switch in the mechanism of communication between the two DNA-binding sites in the SfiI restriction endonuclease
Q53286392BsaXI/RFLP analysis of initial or selectively reamplified PCR product is unreliable in detecting the V617F mutation in JAK2.
Q24816456Characterization of the Type III restriction endonuclease PstII from Providencia stuartii.
Q38535019Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease.
Q42000366DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force
Q33635112DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target
Q41911300Differences between Ca2+ and Mg2+ in DNA binding and release by the SfiI restriction endonuclease: implications for DNA looping
Q30490896Dissecting protein-induced DNA looping dynamics in real time
Q41967553Dynamics and consequences of DNA looping by the FokI restriction endonuclease
Q27664205Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI
Q34202850Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids.
Q40898041Illuminating the reaction pathway of the FokI restriction endonuclease by fluorescence resonance energy transfer
Q37713815Maintaining a sense of direction during long-range communication on DNA.
Q25257159Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI.
Q41770197Restriction endonucleases that bridge and excise two recognition sites from DNA.
Q41814991Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and Their Contribution to RecA-Independent Horizontal Transfer.
Q34851749Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force
Q33911910The essential genomic landscape of the commensal Bifidobacterium breve UCC2003.
Q36173061The restriction endonuclease R.NmeDI from Neisseria meningitidis that recognizes a palindromic sequence and cuts the DNA on both sides of the recognition sequence
Q24673408The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif
Q42957729The single polypeptide restriction-modification enzyme LlaGI is a self-contained molecular motor that translocates DNA loops
Q41132121The type II restriction endonuclease MvaI has dual specificity
Q34172705Translocation, switching and gating: potential roles for ATP in long-range communication on DNA by Type III restriction endonucleases
Q33843093Type II restriction endonucleases--a historical perspective and more
Q37078204Type III restriction enzymes communicate in 1D without looping between their target sites
Q47766790UbaLAI is a monomeric Type IIE restriction enzyme.
Q37360403Use of next generation sequence to investigate potential novel macrolide resistance mechanisms in a population of Moraxella catarrhalis isolates

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