| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2006PNAS..10311555G |
| P356 | DOI | 10.1073/PNAS.0604463103 |
| P932 | PMC publication ID | 1520314 |
| P698 | PubMed publication ID | 16868081 |
| P5875 | ResearchGate publication ID | 6918410 |
| P2093 | author name string | Douglas E Smith | |
| Gregory J Gemmen | |||
| Rachel Millin | |||
| P2860 | cites work | How restriction enzymes became the workhorses of molecular biology | Q24523716 |
| Structure and function of type II restriction endonucleases | Q24555230 | ||
| A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes | Q24684053 | ||
| REBASE--restriction enzymes and DNA methyltransferases | Q24793693 | ||
| The Cfr10I restriction enzyme is functional as a tetramer | Q60500600 | ||
| DNA looping | Q68008374 | ||
| Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein | Q68273726 | ||
| Chromosome pairing via multiple interstitial interactions before and during meiosis in yeast | Q72034931 | ||
| Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules | Q72417475 | ||
| Alternative geometries of DNA looping: an analysis using the SfiI endonuclease | Q73692909 | ||
| Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loops | Q73794058 | ||
| FokI requires two specific DNA sites for cleavage | Q74326486 | ||
| Hopping, jumping and looping by restriction enzymes | Q74347698 | ||
| Oligonucleotide stimulators allow complete cleavage of agarose-embedded DNA by particular type II restriction endonucleases | Q78025563 | ||
| Statistics of loop formation along double helix DNAs | Q81028725 | ||
| Formation of loops in DNA under tension | Q81557177 | ||
| DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway | Q24801031 | ||
| DiANNA: a web server for disulfide connectivity prediction | Q24812610 | ||
| A general method for manipulating DNA sequences from any organism with optical tweezers. | Q25255902 | ||
| Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI. | Q25257159 | ||
| Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing | Q27685433 | ||
| Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding | Q27729783 | ||
| The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments | Q27732162 | ||
| Statistical-mechanical theory of DNA looping. | Q30352244 | ||
| Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping | Q30480720 | ||
| Near-field-magnetic-tweezer manipulation of single DNA molecules | Q33206170 | ||
| Reactions of type II restriction endonucleases with 8-base pair recognition sites | Q33883325 | ||
| Imaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavage | Q33910413 | ||
| Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA. | Q34103727 | ||
| Disruption of protein-mediated DNA looping by tension in the substrate DNA. | Q34189337 | ||
| Making contacts on a nucleic acid polymer | Q34460166 | ||
| Type II restriction endonucleases: structure and mechanism | Q34555997 | ||
| New insight into site-specific recombination from Flp recombinase-DNA structures | Q35070915 | ||
| Enzyme-mediated DNA looping | Q35771536 | ||
| Molecular basis of the effects of shear stress on vascular endothelial cells | Q36220288 | ||
| Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules | Q36798786 | ||
| A mechanical basis for chromosome function | Q37494079 | ||
| DNA looping between the origin of replication of Epstein-Barr virus and its enhancer site: stabilization of an origin complex with Epstein-Barr nuclear antigen 1 | Q37637173 | ||
| DNA binding and recognition by the IIs restriction endonuclease MboII. | Q38295631 | ||
| Simultaneous binding of three recognition sites is necessary for a concerted plasmid DNA cleavage by EcoRII restriction endonuclease | Q38315101 | ||
| Use of specific oligonucleotide duplexes to stimulate cleavage of refractory DNA sites by restriction endonucleases | Q38321306 | ||
| NaeI endonuclease binding to pBR322 DNA induces looping | Q38336509 | ||
| Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation | Q40224683 | ||
| Single molecule detection of DNA looping by NgoMIV restriction endonuclease | Q40239756 | ||
| Diversity of type II restriction endonucleases that require two DNA recognition sites | Q40240500 | ||
| EcoRII can be activated to cleave refractory DNA recognition sites | Q40545771 | ||
| DNA recognition by DNase I. | Q40573558 | ||
| Quality and position of the three lac operators of E. coli define efficiency of repression. | Q40792607 | ||
| One recognition sequence, seven restriction enzymes, five reaction mechanisms. | Q41023221 | ||
| Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease | Q41064313 | ||
| DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force | Q42000366 | ||
| Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites | Q43699908 | ||
| Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF. | Q45985935 | ||
| Going the distance: a current view of enhancer action | Q46076458 | ||
| Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites. | Q52995430 | ||
| Decreased resistance to bacterial infection and granulocyte defects in IAP-deficient mice. | Q54578570 | ||
| P433 | issue | 31 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 11555-11560 | |
| P577 | publication date | 2006-07-25 | |
| P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
| P1476 | title | Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force | |
| P478 | volume | 103 |
| Q35119885 | A new direct single-molecule observation method for DNA synthesis reaction using fluorescent replication protein A. |
| Q86043904 | Biophysics of protein-DNA interactions and chromosome organization |
| Q36499106 | Cleavage mechanism of human Mus81-Eme1 acting on Holliday-junction structures |
| Q38535019 | Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease. |
| Q43124003 | Creation of a type IIS restriction endonuclease with a long recognition sequence |
| Q35259150 | DNA cleavage site selection by Type III restriction enzymes provides evidence for head-on protein collisions following 1D bidirectional motion. |
| Q42183834 | DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations. |
| Q84374951 | DNA structural changes under different stretching methods studied by molecular dynamics simulations |
| Q37839479 | DNA translocation by type III restriction enzymes: a comparison of current models of their operation derived from ensemble and single-molecule measurements |
| Q41911300 | Differences between Ca2+ and Mg2+ in DNA binding and release by the SfiI restriction endonuclease: implications for DNA looping |
| Q34568240 | Downstream DNA tension regulates the stability of the T7 RNA polymerase initiation complex |
| Q41967553 | Dynamics and consequences of DNA looping by the FokI restriction endonuclease |
| Q39094209 | Dynamics of single DNA looping and cleavage by Sau3AI and effect of tension applied to the DNA. |
| Q38005025 | Feeling inter- or intramolecular interactions with the polymer chain as probe: recent progress in SMFS studies on macromolecular interactions |
| Q64084068 | Novel parameter describing restriction endonucleases: Secondary-Cognate-Specificity and chemical stimulation of TsoI leading to substrate specificity change |
| Q27024540 | On the role of DNA biomechanics in the regulation of gene expression |
| Q36481391 | Optical measurement of mechanical forces inside short DNA loops |
| Q41770197 | Restriction endonucleases that bridge and excise two recognition sites from DNA. |
| Q47630113 | The effect of physical form of DNA on exonucleaseIII activity revealed by single-molecule observations. |
| Q37948867 | Towards artificial metallonucleases for gene therapy: recent advances and new perspectives |
| Q36082529 | Trans cooperativity by a split DNA recombinase: the central and catalytic domains of bacteriophage lambda integrase cooperate in cleaving DNA substrates when the two domains are not covalently linked. |
| Q33843093 | Type II restriction endonucleases--a historical perspective and more |
| Q37078204 | Type III restriction enzymes communicate in 1D without looping between their target sites |
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