Imaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavage

scientific article

Imaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavage is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1074/JBC.M003904200
P698PubMed publication ID10903314

P2093author name stringLurz R
Behlke J
Reuter M
Krüger DH
Mackeldanz P
Mücke M
P2860cites workCrystal structure of NaeI--an evolutionary bridge between DNA endonuclease and topoisomeraseQ27624935
Analysis of molecular masses and oligomeric states of protein complexes by blue native electrophoresis and isolation of membrane protein complexes by two-dimensional native electrophoresisQ29617482
Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active formQ29619372
DNA-protein cooperative binding through variable-range elastic couplingQ34170104
Recognition and cleavage of DNA by type-II restriction endonucleasesQ34431350
Changing endonuclease EcoRII Tyr308 to Phe abolishes cleavage but not recognition: possible homology with the Int-family of recombinasesQ34985243
The domain organization of NaeI endonuclease: separation of binding and catalysisQ36003818
Two subunits of EcoRII restriction endonuclease interact with two DNA recognition sitesQ38311075
A model of EcoRII restriction endonuclease action: the active complex is most likely formed by one protein subunit and one DNA recognition siteQ38312680
The monomeric homing endonuclease PI-SceI has two catalytic centres for cleavage of the two strands of its DNA substrateQ38317452
Use of specific oligonucleotide duplexes to stimulate cleavage of refractory DNA sites by restriction endonucleasesQ38321306
Regions of endonuclease EcoRII involved in DNA target recognition identified by membrane-bound peptide repertoires.Q38328208
NaeI endonuclease binding to pBR322 DNA induces loopingQ38336509
The significance of distance and orientation of restriction endonuclease recognition sites in viral DNA genomes.Q40479056
Structure and function of restriction endonucleasesQ40540883
EcoRII can be activated to cleave refractory DNA recognition sitesQ40545771
Ability of DNA and spermidine to affect the activity of restriction endonucleases from several bacterial speciesQ43886671
DNA looping by the Sfi I restriction endonucleaseQ47708812
DNA excision by the Sfi I restriction endonucleaseQ47708855
Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network.Q52224746
Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites.Q52995430
Hyperexpressed EcoRII renatured from inclusion bodies and native enzyme both exhibit essential cooperativity with two DNA sites.Q53013124
The Cfr10I restriction enzyme is functional as a tetramerQ60500600
Interaction of EcoRII restriction and modification enzymes with synthetic DNA fragments. EcoRII endonuclease cleavage of substrates with repeated natural and modified recognition sitesQ70190864
The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequenceQ72241576
DNA topoisomerase and recombinase activities in Nae I restriction endonucleaseQ72635901
EcoRII endonuclease has two identical DNA-binding sites and cleaves one of two co-ordinated recognition sites in one catalytic eventQ74440419
DNA restriction dependent on two recognition sites: activities of the SfiI restriction-modification system in Escherichia coliQ74649181
Hexokinase 2 from Saccharomyces cerevisiae: regulation of oligomeric structure by in vivo phosphorylation at serine-14Q77153347
P433issue39
P407language of work or nameEnglishQ1860
P1104number of pages7
P304page(s)30631-30637
P577publication date2000-09-01
P1433published inJournal of Biological ChemistryQ867727
P1476titleImaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavage
P478volume275

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cites work (P2860)
Q31037795Asymmetric photocross-linking pattern of restriction endonuclease EcoRII to the DNA recognition sequence
Q42000366DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force
Q35873699DNA methylation biomarkers of cancer: moving toward clinical application
Q40421023Direct monitoring of allosteric recognition of type IIE restriction endonuclease EcoRII.
Q40240500Diversity of type II restriction endonucleases that require two DNA recognition sites
Q38362416EcoRII: a restriction enzyme evolving recombination functions?
Q56900882Evolutionary relationship between different subgroups of restriction endonucleases
Q73794058Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loops
Q33977674Single molecular investigation of DNA looping and aggregation by restriction endonuclease BspMI.
Q24555230Structure and function of type II restriction endonucleases
Q34851749Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force

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