Asymmetric photocross-linking pattern of restriction endonuclease EcoRII to the DNA recognition sequence

scientific article

Asymmetric photocross-linking pattern of restriction endonuclease EcoRII to the DNA recognition sequence is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1074/JBC.M109311200
P698PubMed publication ID11832480

P50authorRegine KraftQ114290107
P2093author name stringDetlev H Krüger
Merlind Mücke
Monika Reuter
Gerlinde Grelle
Vera Pingoud
P2860cites workStructure and function of type II restriction endonucleasesQ24555230
Crystal structure of NaeI--an evolutionary bridge between DNA endonuclease and topoisomeraseQ27624935
Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangementQ27633648
Photocrosslinking of 5-Iodouracil-Substituted RNA and DNA to ProteinsQ30464738
Identification of tyrosine 204 as the photo-cross-linking site in the DNA-EcoRI DNA methyltransferase complex by electrospray ionization mass spectrometryQ30632385
Photocross-linking of the homing endonuclease PI-SceI to its recognition sequence.Q30667267
Type II restriction endonucleases: structural, functional and evolutionary relationshipsQ33745019
Critical contacts between HIV-1 integrase and viral DNA identified by structure-based analysis and photo-crosslinkingQ33887759
Imaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavageQ33910413
Identification of an amino acid-base contact in the GCN4-DNA complex by bromouracil-mediated photocrosslinkingQ34255614
DNA and spermidine provide a switch mechanism to regulate the activity of restriction enzyme Nae I.Q34324777
Structure of restriction endonuclease BamHI and its relationship to EcoRI.Q34338704
High yield photocrosslinking of a 5-iodocytidine (IC) substituted RNA to its associated proteinQ34591877
Similarities and differences among 105 members of the Int family of site-specific recombinasesQ34652687
Changing endonuclease EcoRII Tyr308 to Phe abolishes cleavage but not recognition: possible homology with the Int-family of recombinasesQ34985243
Differential proximity probing of two DNA binding sites in the Escherichia coli recA protein using photo-cross-linking methodsQ36800006
A model of EcoRII restriction endonuclease action: the active complex is most likely formed by one protein subunit and one DNA recognition siteQ38312680
Use of specific oligonucleotide duplexes to stimulate cleavage of refractory DNA sites by restriction endonucleasesQ38321306
Identification of the binding site for the extrahelical target base in N6-adenine DNA methyltransferases by photo-cross-linking with duplex oligodeoxyribonucleotides containing 5-iodouracil at the target positionQ38324707
Regions of endonuclease EcoRII involved in DNA target recognition identified by membrane-bound peptide repertoires.Q38328208
Electrospray ionization mass spectrometric characterization of photocrosslinked DNA-EcoRI DNA methyltransferase complexesQ38339822
Identification of a base-specific contact between the restriction endonuclease SsoII and its recognition sequence by photocross-linkingQ39542583
The significance of distance and orientation of restriction endonuclease recognition sites in viral DNA genomes.Q40479056
EcoRII can be activated to cleave refractory DNA recognition sitesQ40545771
DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sitesQ43749963
Nonidentical DNA-binding sites of endonuclease NaeI recognize different families of sequences flanking the recognition siteQ44501284
Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites.Q52995430
Characterization of the genetic determinants of SsoII-restriction endonuclease and modification methyltransferase.Q54329457
Photocross-linking of the NH2-terminal region of Taq MutS protein to the major groove of a heteroduplex DNA.Q54558924
Interaction of EcoRII restriction and modification enzymes with synthetic DNA fragments. EcoRII endonuclease cleavage of substrates with repeated natural and modified recognition sitesQ70190864
DNA topoisomerase and recombinase activities in Nae I restriction endonucleaseQ72635901
EcoRII endonuclease has two identical DNA-binding sites and cleaves one of two co-ordinated recognition sites in one catalytic eventQ74440419
P433issue16
P407language of work or nameEnglishQ1860
P304page(s)14288-14293
P577publication date2002-02-06
P1433published inJournal of Biological ChemistryQ867727
P1476titleAsymmetric photocross-linking pattern of restriction endonuclease EcoRII to the DNA recognition sequence
P478volume277

Reverse relations

cites work (P2860)
Q38362416EcoRII: a restriction enzyme evolving recombination functions?
Q44005236Site-specific interactions of JBP with base and sugar moieties in duplex J-DNA. Evidence for both major and minor groove contacts
Q27657299Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII
Q24535057Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease

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