Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII

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Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKP699
P932PMC publication ID2770665
P698PubMed publication ID19729506
P5875ResearchGate publication ID26788710

P50authorVirginijus ŠikšnysQ22202040
Giedre TamulaitieneQ100152245
Saulius GražulisQ28052829
Elena ManakovaQ28052830
P2093author name stringDmitrij Golovenko
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EcoRII: a restriction enzyme evolving recombination functions?Q38362416
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EcoRII can be activated to cleave refractory DNA recognition sitesQ40545771
Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease.Q42532919
How PspGI, catalytic domain of EcoRII and Ecl18kI acquire specificities for different DNA targetsQ43247619
Reliable detection of DNA cytosine methylation at CpNpG sites using the engineered restriction enzyme EcoRII-C.Q43480763
Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites.Q52995430
Biochemical and mutational analysis of EcoRII functional domains reveals evolutionary links between restriction enzymes.Q53799380
DNA duplexes containing methylated bases or non-nucleotide inserts in the recognition site are cleaved by restriction endonuclease R·EcoRII in presence of canonical substrateQ54172493
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Alternative arrangements of catalytic residues at the active sites of restriction enzymesQ78067597
Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nucleaseQ24535057
Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1Q24558759
Structure of the B3 domain from Arabidopsis thaliana protein At1g16640Q24644287
Topology of Type II REases revisited; structural classes and the common conserved coreQ24682798
REBASE--enzymes and genes for DNA restriction and modificationQ24684227
Crystallography & NMR System: A New Software Suite for Macromolecular Structure DeterminationQ26778405
Crystal structure of NaeI--an evolutionary bridge between DNA endonuclease and topoisomeraseQ27624935
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNAQ27626779
Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangementQ27633648
Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding foldQ27642726
Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA BindingQ27650284
The structure of SgrAI bound to DNA; recognition of an 8 base pair targetQ27651559
Coot: model-building tools for molecular graphicsQ27860505
Macromolecular TLS refinement in REFMAC at moderate resolutionsQ27860526
Searching protein structure databases with DaliLite v.3Q27860638
ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteinsQ27860818
Implementation of molecular replacement in AMoReQ27861032
An approach to multi-copy search in molecular replacementQ27861050
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Scaling and assessment of data qualityQ27861107
The integration of macromolecular diffraction dataQ27861123
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acidsQ29616630
Asymmetric photocross-linking pattern of restriction endonuclease EcoRII to the DNA recognition sequenceQ31037795
Identification of base-specific contacts in protein-DNA complexes by photocrosslinking and mass spectrometry: a case study using the restriction endonuclease SsoII.Q33252441
SCOP database in 2002: refinements accommodate structural genomicsQ33956534
DNA and spermidine provide a switch mechanism to regulate the activity of restriction enzyme Nae I.Q34324777
Type II restriction endonucleases: structure and mechanismQ34555997
Direct visualization of the EcoRII-DNA triple synaptic complex by atomic force microscopyQ34685318
Central base pair flipping and discrimination by PspGI.Q36959595
The plant B3 superfamilyQ37318409
P433issue19
P407language of work or nameEnglishQ1860
P304page(s)6613-24
P577publication date2009-10-01
P1433published inNucleic Acids ResearchQ135122
P1476titleStructural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII
P478volume37

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cites work (P2860)
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Q27664636DNA intercalation without flipping in the specific ThaI-DNA complex
Q34298082DNA synapsis through transient tetramerization triggers cleavage by Ecl18kI restriction enzyme.
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Q34338657Re-visiting protein-centric two-tier classification of existing DNA-protein complexes
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Q33352954Systematic analysis of plant-specific B3 domain-containing proteins based on the genome resources of 11 sequenced species
Q27675549The Arabidopsis B3 Domain Protein VERNALIZATION1 (VRN1) Is Involved in Processes Essential for Development, with Structural and Mutational Studies Revealing Its DNA-binding Surface
Q89081042The crystal structure of the Helicobacter pylori LlaJI.R1 N-terminal domain provides a model for site-specific DNA binding
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Q47766790UbaLAI is a monomeric Type IIE restriction enzyme.
Q93177828Unique mechanism of target recognition by PfoI restriction endonuclease of the CCGG-family

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