Illuminating the reaction pathway of the FokI restriction endonuclease by fluorescence resonance energy transfer

scientific article

Illuminating the reaction pathway of the FokI restriction endonuclease by fluorescence resonance energy transfer is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKR809
P932PMC publication ID3273807
P698PubMed publication ID21993298
P5875ResearchGate publication ID51713742

P2093author name stringStephen E Halford
Christian Pernstich
P2860cites workREBASE--a database for DNA restriction and modification: enzymes, genes and genomesQ24644735
FokI dimerization is required for DNA cleavageQ24657843
Structure of FokI has implications for DNA cleavageQ24657897
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genesQ24684053
Protein assembly and DNA looping by the FokI restriction endonucleaseQ25257871
Structure of the multimodular endonuclease FokI bound to DNAQ27740190
Fundamental aspects of protein-protein association kineticsQ33893739
Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.Q34103727
Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificityQ34474076
Type II restriction endonucleases: structure and mechanismQ34555997
Fluorescence Energy Transfer as a Spectroscopic RulerQ34661461
Single amino acid substitutions uncouple the DNA binding and strand scission activities of Fok I endonuclease.Q36601344
Functional domains in Fok I restriction endonuclease.Q37000625
An end to 40 years of mistakes in DNA-protein association kinetics?Q37416158
The type IIB restriction endonucleases.Q37713817
Class-IIS restriction enzymes--a reviewQ37765759
Rapid reaction analysis of the catalytic cycle of the EcoRV restriction endonuclease.Q38299730
Insertion and deletion mutants of FokI restriction endonucleaseQ38301161
Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: a study using fluorescent oligonucleotides and fluorescence polarizationQ38301346
Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease.Q38344915
Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoilingQ39738169
A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 3'-5' and 5'-3' strands by rotating a single active siteQ39986656
Diversity of type II restriction endonucleases that require two DNA recognition sitesQ40240500
Structure and function of restriction endonucleasesQ40540883
One recognition sequence, seven restriction enzymes, five reaction mechanisms.Q41023221
Novel site-specific DNA endonucleasesQ41728281
Differences between Ca2+ and Mg2+ in DNA binding and release by the SfiI restriction endonuclease: implications for DNA loopingQ41911300
Dynamics and consequences of DNA looping by the FokI restriction endonucleaseQ41967553
The EcoRI restriction endonuclease with bacteriophage lambda DNA. Kinetic studiesQ42881808
Targeting individual subunits of the FokI restriction endonuclease to specific DNA strandsQ43141069
New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI).Q48407304
Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions.Q54618527
A novel class of FokI restriction endonuclease mutants that cleave hemi-methylated substrates.Q54635287
The kinetic mechanism of EcoRI endonucleaseQ64388761
Purification and characterization of the FokI restriction endonucleaseQ69385045
DNA binding mode of class-IIS restriction endonuclease FokI revealed by DNA footprinting analysisQ72697126
FokI requires two specific DNA sites for cleavageQ74326486
[Type IIE and IIF restriction endonucleases interacting with two recognition sites in DNA]Q81034176
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P433issue3
P304page(s)1203-1213
P577publication date2011-10-12
P1433published inNucleic Acids ResearchQ135122
P1476titleIlluminating the reaction pathway of the FokI restriction endonuclease by fluorescence resonance energy transfer
P478volume40

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cites work (P2860)
Q36079071Balancing between affinity and speed in target DNA search by zinc-finger proteins via modulation of dynamic conformational ensemble
Q42183834DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations.
Q42052270DNA looping by FokI: the impact of twisting and bending rigidity on protein-induced looping dynamics.
Q92267535Enhancing gene editing specificity by attenuating DNA cleavage kinetics
Q42005307Kinetics of fast changing intramolecular distance distributions obtained by combined analysis of FRET efficiency kinetics and time-resolved FRET equilibrium measurements
Q41429735Organization of the BcgI restriction-modification protein for the cleavage of eight phosphodiester bonds in DNA.
Q35070354TALE-PvuII fusion proteins--novel tools for gene targeting.

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