Protein assembly and DNA looping by the FokI restriction endonuclease

scientific article

Protein assembly and DNA looping by the FokI restriction endonuclease is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/GKL076
P932PMC publication ID1410913
P698PubMed publication ID16556912
P5875ResearchGate publication ID7222237

P2093author name stringStephen E Halford
Lucy E Catto
Susan E Milsom
Abigail J Welsh
Sumita Ganguly
P2860cites workNucleoside triphosphate-dependent restriction enzymesQ24555228
FokI dimerization is required for DNA cleavageQ24657843
Structure of FokI has implications for DNA cleavageQ24657897
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genesQ24684053
REBASE--restriction enzymes and DNA methyltransferasesQ24793693
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNAQ27626779
Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangementQ27633648
Structure of the multimodular endonuclease FokI bound to DNAQ27740190
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.Q34091428
Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.Q34103727
Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI.Q34410970
Type II restriction endonucleases: structure and mechanismQ34555997
How the Bfi I restriction enzyme uses one active site to cut two DNA strandsQ35143107
Enzyme-mediated DNA loopingQ35771536
Functional domains in Fok I restriction endonuclease.Q37000625
DNA binding and recognition by the IIs restriction endonuclease MboII.Q38295631
The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC.Q38303246
The monomeric homing endonuclease PI-SceI has two catalytic centres for cleavage of the two strands of its DNA substrateQ38317452
Specificity from the synapsis of DNA elements by the Sfi I endonucleaseQ38323728
Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease.Q38344915
The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centreQ38357645
DNA supercoiling enables the type IIS restriction enzyme BspMI to recognise the relative orientation of two DNA sequencesQ39922663
Diversity of type II restriction endonucleases that require two DNA recognition sitesQ40240500
Structure and function of restriction endonucleasesQ40540883
EcoRII can be activated to cleave refractory DNA recognition sitesQ40545771
Transposition and site-specific recombination: adapting DNA cut-and-paste mechanisms to a variety of genetic rearrangementsQ41625243
A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA.Q43048971
DNA looping by the Sfi I restriction endonucleaseQ47708812
Subunit assembly for DNA cleavage by restriction endonuclease SgrAI.Q54528761
Plasmid DNA Cleavage byMunI Restriction Enzyme: Single-Turnover and Steady-State Kinetic Analysis†Q57267696
Sequence-dependent helical periodicity of DNAQ59073903
The Cfr10I restriction enzyme is functional as a tetramerQ60500600
Cleavage of Individual DNA Strands by the Different Subunits of the Heterodimeric Restriction Endonuclease BbvCIQ63362548
The kinetic mechanism of EcoRI endonucleaseQ64388761
DNA loopingQ68008374
Purification and characterization of the FokI restriction endonucleaseQ69385045
DNA cleavage at two recognition sites by the SfiI restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sitesQ71751602
The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequenceQ72241576
Atypical DNA-binding properties of class-IIS restriction endonucleases: evidence for recognition of the cognate sequence by a FokI monomerQ72383650
Crystallization and preliminary X-ray analysis of restriction endonuclease FokI bound to DNAQ73094721
Alternative geometries of DNA looping: an analysis using the SfiI endonucleaseQ73692909
Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loopsQ73794058
FokI requires two specific DNA sites for cleavageQ74326486
DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sitesQ74328897
Hopping, jumping and looping by restriction enzymesQ74347698
Does BcgI, a unique restriction endonuclease, require two recognition sites for cleavage?Q74653661
The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequenceQ77309135
[Type IIE and IIF restriction endonucleases interacting with two recognition sites in DNA]Q81034176
P433issue6
P407language of work or nameEnglishQ1860
P304page(s)1711-1720
P577publication date2006-03-23
P1433published inNucleic Acids ResearchQ135122
P1476titleProtein assembly and DNA looping by the FokI restriction endonuclease
P478volume34

Reverse relations

cites work (P2860)
Q39986656A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 3'-5' and 5'-3' strands by rotating a single active site
Q41959958A novel zinc-finger nuclease platform with a sequence-specific cleavage module.
Q47114521A single active site in the mariner transposase cleaves DNA strands of opposite polarity.
Q41901647Adding fingers to an engineered zinc finger nuclease can reduce activity
Q37243964An EM view of the FokI synaptic complex by single particle analysis
Q46506838Analysis of P element transposase protein-DNA interactions during the early stages of transposition
Q38535019Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease.
Q28298846Creating Designed Zinc-Finger Nucleases with Minimal Cytotoxicity
Q43124003Creation of a type IIS restriction endonuclease with a long recognition sequence
Q42002446DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes
Q42183834DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations.
Q42052270DNA looping by FokI: the impact of twisting and bending rigidity on protein-induced looping dynamics.
Q42000366DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force
Q41967553Dynamics and consequences of DNA looping by the FokI restriction endonuclease
Q40898041Illuminating the reaction pathway of the FokI restriction endonuclease by fluorescence resonance energy transfer
Q35991442Monomeric site-specific nucleases for genome editing
Q41429735Organization of the BcgI restriction-modification protein for the cleavage of eight phosphodiester bonds in DNA.
Q61207189Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A
Q39048699Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA
Q24682734Restriction endonuclease BpuJI specific for the 5'-CCCGT sequence is related to the archaeal Holliday junction resolvase family
Q41770197Restriction endonucleases that bridge and excise two recognition sites from DNA.
Q28307957Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
Q35070354TALE-PvuII fusion proteins--novel tools for gene targeting.
Q38855439Target site cleavage by the monomeric restriction enzyme BcnI requires translocation to a random DNA sequence and a switch in enzyme orientation
Q43141069Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands
Q37856408The reaction mechanism of FokI excludes the possibility of targeting zinc finger nucleases to unique DNA sites.
Q37948867Towards artificial metallonucleases for gene therapy: recent advances and new perspectives
Q33843093Type II restriction endonucleases--a historical perspective and more
Q28283445Zinc-finger nucleases: the next generation emerges

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