DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes

scientific article published on 26 July 2007

DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/SJ.EMBOJ.7601807
P932PMC publication ID1952222
P698PubMed publication ID17660745
P5875ResearchGate publication ID6177860

P2093author name stringDavid T F Dryden
Neal Crampton
Desirazu N Rao
J Michael Edwardson
Robert M Henderson
Stefanie Roes
P2860cites workNucleoside triphosphate-dependent restriction enzymesQ24555228
How do site-specific DNA-binding proteins find their targets?Q24563835
Characterization of the Type III restriction endonuclease PstII from Providencia stuartii.Q24816456
Protein assembly and DNA looping by the FokI restriction endonucleaseQ25257871
Dynamics of initiation, termination and reinitiation of DNA translocation by the motor protein EcoR124IQ30476686
When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I.Q30477324
Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I.Q31937862
Model for how type I restriction enzymes select cleavage sites in DNA.Q33584495
Complex restriction enzymes: NTP-driven molecular motorsQ34178514
S-Adenosyl-L-methionine-dependent restriction enzymesQ34317912
Making contacts on a nucleic acid polymerQ34460166
Modularity and specialization in superfamily 1 and 2 helicasesQ34559075
Lac repressor binding to synthetic DNAs of defined nucleotide sequenceQ34695884
Helicase mechanisms and the coupling of helicases within macromolecular machines. Part I: Structures and properties of isolated helicasesQ35079667
Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: Integration of helicases into cellular processesQ35087341
DNA flexibility studied by covalent closure of short fragments into circlesQ35456824
Enzyme-mediated DNA loopingQ35771536
Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI.Q36541346
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysisQ37698719
Continuous assays for DNA translocation using fluorescent triplex dissociation: application to type I restriction endonucleases.Q38327753
EcoKI with an amino acid substitution in any one of seven DEAD-box motifs has impaired ATPase and endonuclease activitiesQ39725548
DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D loopingQ39946292
Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopyQ40167374
Diversity of type II restriction endonucleases that require two DNA recognition sitesQ40240500
Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzymeQ40404726
Action at a distance: DNA-looping and initiation of transcriptionQ40951537
Structural model for the multisubunit Type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA.Q42062102
S-adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymesQ43648772
DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sitesQ43749963
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.Q43959489
The DNA translocation and ATPase activities of restriction-deficient mutants of Eco KI.Q45070688
The type I restriction endonuclease EcoR124I, couples ATP hydrolysis to bidirectional DNA translocationQ46673172
Accurate length determination of DNA molecules visualized by atomic force microscopy: evidence for a partial B- to A-form transition on micaQ48536122
The DNA restriction endonuclease of Escherichia coli B. I. Studies of the DNA translocation and the ATPase activities.Q50803849
Kinetics of interior loop formation in semiflexible chains.Q51945689
Energetics of DNA twisting. I. Relation between twist and cyclization probability.Q52700197
Scanning force microscopy of DNA translocation by the Type III restriction enzyme EcoP15I.Q52943618
The deoxyribonucleic acid modification and restriction enzymes of Escherichia coli B.Q54172996
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavageQ55043499
Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. I. Computational analysisQ68740739
The deoxyribonucleic acid modification and restriction enzymes of Escherichia coli B. II. Purification, subunit structure, and catalytic properties of the restriction endonucleaseQ69235072
High level expression of the EcoP1 modification methylase gene and characterisation of the gene productQ69807302
DNA translocation by the restriction enzyme from E. coli KQ72855531
DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAIQ73405013
Purification of Lac repressor protein using polymer displacement and immobilization of the proteinQ73724694
Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopyQ77787225
Formation of loops in DNA under tensionQ81557177
P433issue16
P407language of work or nameEnglishQ1860
P304page(s)3815-3825
P577publication date2007-07-26
P1433published inThe EMBO JournalQ1278554
P1476titleDNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes
P478volume26