Type III restriction-modification enzymes: a historical perspective

scientific article

Type III restriction-modification enzymes: a historical perspective is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P356DOI10.1093/NAR/GKT616
P8608Fatcat IDrelease_xb2cr2vupnecjkomqfyqimxxsa
P932PMC publication ID3874151
P698PubMed publication ID23863841
P5875ResearchGate publication ID249997037

P2093author name stringDavid T F Dryden
Desirazu N Rao
Shivakumara Bheemanaik
P2860cites workA nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genesQ24684053
Clear plaque mutants of phage P1Q29053309
Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and loopingQ30479841
Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeatQ30494970
Characterization of a CACAG pentanucleotide repeat in Pasteurella haemolytica and its possible role in modulation of a novel type III restriction-modification systemQ30642496
Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I.Q31937862
Phasevarions mediate random switching of gene expression in pathogenic NeisseriaQ33434451
ATP-dependent restriction enzymesQ33851803
Gene expression analysis of plant host-pathogen interactions by SuperSAGEQ33974590
HOST SPECIFICITY OF DNA PRODUCED BY ESCHERICHIA COLI. VI. EFFECTS ON BACTERIAL CONJUGATIONQ33981769
The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genesQ34097495
Translocation, switching and gating: potential roles for ATP in long-range communication on DNA by Type III restriction endonucleasesQ34172705
DNA Restriction Enzyme from E. coliQ34220586
DNA modification and restrictionQ34221874
Host specificity of DNA produced by Escherichia coli. I. Host controlled modification of bacteriophage lambdaQ34251434
Host specificity of DNA produced by Escherichia coli. II. Control over acceptance of DNA from infecting phage lambdaQ34252041
Transcriptional phase variation of a type III restriction-modification system in Helicobacter pyloriQ34320449
M.EcoPl5 methylates the second adenine in its recognition sequenceQ35772916
Characterization of mutations of the bacteriophage P1 mod gene encoding the recognition subunit of the EcoP1 restriction and modification systemQ36176426
Host specificity of DNA produced by Escherichia coli, X. In vitro restriction of phage fd replicative formQ36471251
Type III restriction enzymes communicate in 1D without looping between their target sitesQ37078204
Structural insights into the assembly and shape of Type III restriction-modification (R-M) EcoP15I complex by small-angle X-ray scattering.Q37252417
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysisQ37698719
DNA translocation by type III restriction enzymes: a comparison of current models of their operation derived from ensemble and single-molecule measurementsQ37839479
DNA recognition by the EcoP15I and EcoPI modification methyltransferasesQ38295255
Purification and Properties of a New Restriction Endonuclease from Haemophilus influenzae RfQ39232995
Counting CAG repeats in the Huntington's disease gene by restriction endonuclease EcoP15I cleavageQ39676150
Functional cooperation between exonucleases and endonucleases--basis for the evolution of restriction enzymesQ39744399
Purification and properties of the P15 specific restriction endonuclease from Escherichia coliQ39799531
DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D loopingQ39946292
Intracellular modification of nucleic acidsQ40026027
Host-Controlled Modification of BacteriophageQ40026635
Methylation and cleavage sequences of the EcoP1 restriction-modification enzymeQ40218789
DNA recognition and cleavage by the EcoP15 restriction endonucleaseQ40289784
Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzymeQ40404726
The helicase-like domains of type III restriction enzymes trigger long-range diffusion along DNAQ40462523
Steps in the reaction mechanism of the Escherichia coli plasmid P15-specific restriction endonucleaseQ40935436
Sequence specificity of the P1 modification methylase (M·Eco P1) and the DNA methylase (M·Eco dam) controlled by the Escherichia coli dam geneQ41008257
Isolation and characterization of cloned fragments of bacteriophage P1 DNAQ41657002
DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymesQ42002446
The deoxyribonucleic acid modification enzyme of bacteriophage P1Q42057995
Type III restriction endonuclease EcoP15I is a heterotrimeric complex containing one Res subunit with several DNA-binding regions and ATPase activityQ42131651
The deoxyribonucleic acid modification enzyme of bacteriophage P1. Subunit structureQ42288177
The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases.Q42617085
Transcriptional analysis of the restriction and modification genes of bacteriophage P1.Q42628637
DNA cleavage by type III restriction-modification enzyme EcoP15I is independent of spacer distance between two head to head oriented recognition sitesQ43749963
Posttranscriptional regulation of EcoP1I and EcoP15I restriction activityQ43980444
Physical mapping of BglII, BamHI, EcoRI, HindIII and PstI restriction fragments of bacteriophage P1 DNAQ44020890
The bacteriophage P1 restriction endonucleaseQ44914916
Host specificity of DNA in Haemophilus influenzae: the restriction and modification systems in strains Rb and Rf.Q45240020
Action of Escherichia coli P1 restriction endonuclease on simian virus 40 DNA.Q45817767
Functional characterization and modulation of the DNA cleavage efficiency of type III restriction endonuclease EcoP15I in its interaction with two sites in the DNA targetQ46105127
Exogenous AdoMet and its analogue sinefungin differentially influence DNA cleavage by R.EcoP15I--usefulness in SAGE.Q46606424
Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutantsQ48327658
Scanning force microscopy of DNA translocation by the Type III restriction enzyme EcoP15I.Q52943618
Host specificity of DNA in Haemophilus influenzae: similarity between host-specificity types of Haemophilus influenzae Re and Rf.Q54580296
ATP hydrolysis is required for DNA cleavage by EcoPI restriction enzyme.Q54614011
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavageQ55043499
Nucleotide sequences at the sites of action of the deoxyribonucleic acid modification enzyme of bacteriophage P1Q59595335
DNA restriction--modification genes of phage P1 and plasmid p15B. Structure and in vitro transcriptionQ67286988
DNA restriction--modification enzymes of phage P1 and plasmid p15B. Subunit functions and structural homologiesQ67286996
Studies of SV 40 DNA. V. Conversion of circular to linear SV 40 DNA by restriction endonuclease from Escherichia coli BQ68661260
Host specificity of DNA in Haemophilusinfluenzae: Restriction and modification in strain RdQ69091031
The influence of methionine deprivation on restriction properties of Haemophilus influenzae Rd and Ra strainsQ69131964
DNA Modification and RestrictionQ69353381
Modification-deficient mutants of bacteriophage P1. I. Restriction by P1 cryptic lysogensQ69360757
Prophage P1, an Extrachromosomal Replication UnitQ69878239
DNA methylation of bacterial viruses T3 and T7 by different DNA methylases in Escherichia coli K12 cellsQ69899876
Host specificity of DNA produced by Escherichia coli. XII. The two restriction and modification systems of strain 15T-Q69920009
Host specificity of DNA produced by Escherichia coli. 13. Breakdown of cellular DNA upon growth in ethionine of strains with r plus-15, r plus-P1 or r plus-N3 restriction phenotypesQ69922800
Preferential cleavage by restriction endonuclease HinfIIIQ72414682
Transposon mutagenesis of the gene encoding the bacteriophage P1 restriction endonuclease. Co-linearity of the gene and gene productQ72899338
Cleavage and methylation of DNA by the restriction endonuclease HinfIII isolated from Haemophilus influenzae RfQ72899342
Role of ATP in the cleavage mechanism of the EcoP15 restriction endonucleaseQ72899346
The DNA sequence recognised by the HinfIII restriction endonucleaseQ72903388
HineI is an isoschizomer of HinfIII restriction endonucleaseQ72941436
Suppression of the multiplication of heterologous bacteriophages in lysogenic bacteriaQ74543486
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectenzymeQ8047
endonucleaseQ415601
P304page(s)45-55
P577publication date2013-07-17
2014-01-01
P1433published inNucleic Acids ResearchQ135122
P1476titleType III restriction-modification enzymes: a historical perspective
P478volume42

Reverse relations

cites work (P2860)
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Q41986732ClpXP protease targets long-lived DNA translocation states of a helicase-like motor to cause restriction alleviation
Q38829918Comparative Genome Analysis of Fusobacterium nucleatum.
Q33635112DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target
Q40339297DNA target recognition domains in the Type I restriction and modification systems of Staphylococcus aureus
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Q42773415Editorial: NAR surveys the past, present and future of restriction endonucleases
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Q92709352Genome-wide systematic identification of methyltransferase recognition and modification patterns
Q35586382Improving transformation of Staphylococcus aureus belonging to the CC1, CC5 and CC8 clonal complexes
Q37349251Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?
Q42080810Mapping DNA cleavage by the Type ISP restriction-modification enzymes following long-range communication between DNA sites in different orientations
Q93186301N 4-Cytosine DNA Methylation Is Involved in the Maintenance of Genomic Stability in Deinococcus radiodurans
Q26769919Next-generation sequencing as an approach to dairy starter selection
Q31130904Novel Methyltransferase Recognition Motif Identified in Chania multitudinisentens RB-25(T) gen. nov., sp. nov
Q49917740Phasevarions of Bacterial Pathogens: Methylomics Sheds New Light on Old Enemies
Q89766428Prophage-Mediated Disruption of Genetic Competence in Staphylococcus pseudintermedius
Q90191283Resistance mechanisms adopted by a Salmonella Typhimurium mutant against bacteriophage
Q64389526Single-site DNA cleavage by Type III restriction endonuclease requires a site-bound enzyme and a trans-acting enzyme that are ATPase-activated
Q34470436Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N(6)-adenine DNA methyltransferases of Neisseria meningitidis.
Q57285690Streptococcus suis contains multiple phase-variable methyltransferases that show a discrete lineage distribution
Q35813483Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I
Q58611623Structure, subunit organization and behavior of the asymmetric Type IIT restriction endonuclease BbvCI
Q43029974TfoI produced by Tepidimonas fonticaldi PL17, a moderate thermophilic bacterium, is an isoschizomer of MseI.
Q28550136The Epigenomic Landscape of Prokaryotes
Q52374636The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor.
Q64075885The Patchy Distribution of Restriction⁻Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria
Q27312374Translocation-coupled DNA cleavage by the Type ISP restriction-modification enzymes
Q33843093Type II restriction endonucleases--a historical perspective and more
Q36387438Type III Methyltransferase M.NgoAX from Neisseria gonorrhoeae FA1090 Regulates Biofilm Formation and Interactions with Human Cells
Q39095250Type III restriction endonucleases are heterotrimeric: comprising one helicase-nuclease subunit and a dimeric methyltransferase that binds only one specific DNA.

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