review article | Q7318358 |
scholarly article | Q13442814 |
P50 | author | Gisela Storz | Q29470553 |
P2093 | author name string | Chase L Beisel | |
P2860 | cites work | Efficient degradation and expression prioritization with small RNAs. | Q54433113 |
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq | Q21145046 | ||
Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation | Q21145881 | ||
Core transcriptional regulatory circuitry in human embryonic stem cells | Q24322016 | ||
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding | Q24533360 | ||
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli | Q24536169 | ||
Target prediction for small, noncoding RNAs in bacteria | Q24544245 | ||
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli | Q24563596 | ||
A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA) | Q24594977 | ||
Regulatory RNAs in bacteria | Q24595082 | ||
Reprogramming of anaerobic metabolism by the FnrS small RNA | Q24606364 | ||
Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response | Q24615641 | ||
Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli | Q24634637 | ||
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription | Q24645477 | ||
Small RNAs establish delays and temporal thresholds in gene expression | Q24646228 | ||
A small-RNA-mediated negative feedback loop controls quorum-sensing dynamics in Vibrio harveyi | Q24646388 | ||
Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target | Q24647466 | ||
A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures | Q24652762 | ||
The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator | Q24653385 | ||
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay | Q24669800 | ||
Aerobic regulation of the sucABCD genes of Escherichia coli, which encode alpha-ketoglutarate dehydrogenase and succinyl coenzyme A synthetase: roles of ArcA, Fnr, and the upstream sdhCDAB promoter | Q24678384 | ||
Cyclic AMP-cyclic AMP receptor protein as a repressor of transcription of the spf gene of Escherichia coli | Q24681263 | ||
Structure and function of the feed-forward loop network motif | Q24683513 | ||
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide | Q24683800 | ||
The novel transcription factor SgrR coordinates the response to glucose-phosphate stress | Q24683850 | ||
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA | Q27658064 | ||
Transcriptional regulatory networks in Saccharomyces cerevisiae | Q27860846 | ||
Regulation and mode of action of the second small RNA activator of RpoS translation, RprA | Q28212671 | ||
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs | Q28216159 | ||
Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase | Q28220384 | ||
The galactose regulon of Escherichia coli | Q28239207 | ||
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation | Q28252581 | ||
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq | Q28253347 | ||
Switching off small RNA regulation with trap-mRNA | Q28255082 | ||
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA | Q28257497 | ||
Effect of RyhB small RNA on global iron use in Escherichia coli | Q28275120 | ||
Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding | Q28286135 | ||
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs | Q28287313 | ||
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA | Q28288672 | ||
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system | Q28291273 | ||
CsrB sRNA family: sequestration of RNA-binding regulatory proteins | Q28294761 | ||
Mechanism of RNA silencing by Hfq-binding small RNAs | Q28294833 | ||
A rough guide to the non-coding RNA world of Salmonella | Q28300754 | ||
An antisense RNA inhibits translation by competing with standby ribosomes | Q28302101 | ||
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis | Q28304722 | ||
Quantitative characteristics of gene regulation by small RNA | Q28469313 | ||
Network motifs: simple building blocks of complex networks | Q29547340 | ||
Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
Network motifs: theory and experimental approaches | Q29615325 | ||
Engineering stability in gene networks by autoregulation | Q29615326 | ||
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction | Q29619904 | ||
The bacterial Sm-like protein Hfq: a key player in RNA transactions | Q29620062 | ||
Just-in-time transcription program in metabolic pathways | Q33202257 | ||
SigmaE regulates and is regulated by a small RNA in Escherichia coli | Q33281445 | ||
Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria | Q33951673 | ||
Negative autoregulation speeds the response times of transcription networks | Q33962256 | ||
Positive regulation by small RNAs and the role of Hfq | Q34006620 | ||
Scaling laws in the functional content of genomes | Q34228161 | ||
The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli | Q34483407 | ||
Regulatory dynamics of synthetic gene networks with positive feedback | Q34526328 | ||
A chance at survival: gene expression noise and phenotypic diversification strategies | Q34946251 | ||
Bacterial quorum-sensing network architectures | Q35037002 | ||
Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi. | Q35589172 | ||
Porin channels in Escherichia coli: studies with liposomes reconstituted from purified proteins | Q36324743 | ||
A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode. | Q36367237 | ||
Transcriptional regulatory networks in bacteria: from input signals to output responses. | Q36581863 | ||
Hfq structure, function and ligand binding | Q36774884 | ||
RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA. | Q36802626 | ||
Living with noisy genes: how cells function reliably with inherent variability in gene expression | Q36810344 | ||
6S RNA: a regulator of transcription | Q36917127 | ||
A quantitative comparison of sRNA-based and protein-based gene regulation | Q36973020 | ||
The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior | Q37051352 | ||
Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression | Q37125162 | ||
Dynamic features of gene expression control by small regulatory RNAs. | Q37249990 | ||
Negative feedback that improves information transmission in yeast signalling | Q37277701 | ||
Small RNAs establish gene expression thresholds | Q37303336 | ||
Global analysis of the genetic network controlling a bacterial cell cycle | Q38305782 | ||
Expression of micF involved in porin synthesis in Escherichia coli: two distinct cis-acting elements respectively regulate micF expression positively and negatively | Q38333388 | ||
From acids to osmZ: multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli. | Q41113929 | ||
Regulation of gene expression by small non-coding RNAs: a quantitative view | Q41585774 | ||
Universal patterns of purifying selection at noncoding positions in bacteria | Q42216121 | ||
From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli | Q47817916 | ||
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator | Q48047346 | ||
P433 | issue | 5 | |
P304 | page(s) | 866-882 | |
P577 | publication date | 2010-06-23 | |
P1433 | published in | FEMS Microbiology Reviews | Q15762226 |
P1476 | title | Base pairing small RNAs and their roles in global regulatory networks | |
P478 | volume | 34 |
Q46596623 | A Feed-Forward Loop Consisting of the Response Regulator RpaB and the Small RNA PsrR1 Controls Light Acclimation of Photosystem I Gene Expression in the Cyanobacterium Synechocystis sp. PCC 6803. |
Q41699610 | A Genome-Wide Prediction and Identification of Intergenic Small RNAs by Comparative Analysis in Mesorhizobium huakuii 7653R. |
Q36139087 | A Regulatory Circuit Composed of a Transcription Factor, IscR, and a Regulatory RNA, RyhB, Controls Fe-S Cluster Delivery |
Q28255704 | A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD |
Q38841045 | A conserved α-proteobacterial small RNA contributes to osmoadaptation and symbiotic efficiency of rhizobia on legume roots. |
Q54342548 | A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp. |
Q41509320 | A mixed incoherent feed-forward loop contributes to the regulation of bacterial photosynthesis genes |
Q36631216 | A novel fluorescent reporter system for monitoring and identifying RNase III activity and its target RNAs |
Q21134135 | A pseudo-tRNA modulates antibiotic resistance in Bacillus cereus |
Q34405826 | A small RNA controls a protein regulator involved in antibiotic resistance in Staphylococcus aureus |
Q38029010 | Acting antisense: plasmid- and chromosome-encoded sRNAs from Gram-positive bacteria |
Q53485212 | Adaptation of Tri-molecular fluorescence complementation allows assaying of regulatory Csr RNA-protein interactions in bacteria. |
Q36060575 | Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks |
Q41982165 | An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains. |
Q33768399 | An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation |
Q55027595 | An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA. |
Q42696570 | Antagonistic functions between the RNA chaperone Hfq and an sRNA regulate sensitivity to the antibiotic colicin |
Q27001203 | Antimicrobial strategies centered around reactive oxygen species--bactericidal antibiotics, photodynamic therapy, and beyond |
Q34135544 | Behavior and target site selection of conjugative transposon Tn916 in two different strains of toxigenic Clostridium difficile |
Q48293868 | CSM murray award lecture - functional studies of the Lyme disease spirochete - from molecules to mice |
Q31151284 | Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria. |
Q36145055 | Characteristics of Pos19 - A Small Coding RNA in the Oxidative Stress Response of Rhodobacter sphaeroides |
Q40681057 | Characterizing the transcriptional adaptation of Staphylococcus aureus to stationary phase growth |
Q35046553 | Circuitry linking the Csr and stringent response global regulatory systems |
Q34530574 | Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs |
Q37122110 | Conserved arginines on the rim of Hfq catalyze base pair formation and exchange |
Q21131396 | Control of virulence by small RNAs in Streptococcus pneumoniae |
Q91594621 | Coordinate regulation of the expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin in Escherichia coli |
Q41516624 | Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA |
Q24490182 | Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation |
Q39614417 | Direct comparison of small RNA and transcription factor signaling |
Q35667449 | Discriminating tastes: physiological contributions of the Hfq-binding small RNA Spot 42 to catabolite repression |
Q34310279 | Divergently overlapping cis-encoded antisense RNA regulating toxin-antitoxin systems from E. coli: hok/sok, ldr/rdl, symE/symR. |
Q24607427 | Duplex formation between the sRNA DsrA and rpoS mRNA is not sufficient for efficient RpoS synthesis at low temperature |
Q36814230 | Effects of post-transcriptional regulation on phenotypic noise in Escherichia coli |
Q35867666 | Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella genomes |
Q27024583 | Experimental approaches to identify small RNAs and their diverse roles in bacteria--what we have learnt in one decade of MicA research |
Q43181671 | Exploration of the role of the non-coding RNA SbrE in L. monocytogenes stress response |
Q33564962 | Expression of Porphyromonas gingivalis small RNA in response to hemin availability identified using microarray and RNA-seq analysis |
Q33899594 | Expression of each cistron in the gal operon can be regulated by transcription termination and generation of a galk-specific mRNA, mK2 |
Q35217099 | Functional characterization of bacterial sRNAs using a network biology approach |
Q37061489 | Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation |
Q35122992 | Generation and phenotyping of a collection of sRNA gene deletion mutants of the haloarchaeon Haloferax volcanii |
Q28834060 | Genome-Wide Detection of Predicted Non-coding RNAs Related to the Adhesion Process in Vibrio alginolyticus Using High-Throughput Sequencing |
Q55112803 | Global Regulation by CsrA and Its RNA Antagonists. |
Q38994591 | Global Transcriptional Responses to Osmotic, Oxidative, and Imipenem Stress Conditions in Pseudomonas putida |
Q47096901 | Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics |
Q42582045 | Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing |
Q29615791 | Hfq and its constellation of RNA |
Q36280714 | Hfq proximity and orientation controls RNA annealing |
Q64067281 | Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation |
Q24489927 | High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates |
Q35620619 | How do base-pairing small RNAs evolve? |
Q33981476 | HrpA, a DEAH-box RNA helicase, is involved in global gene regulation in the Lyme disease spirochete |
Q49514296 | Identification and Characterization of 5' Untranslated Regions (5'UTRs) in Zymomonas mobilis as Regulatory Biological Parts |
Q30657427 | Identification and characterization of three Vibrio alginolyticus non-coding RNAs involved in adhesion, chemotaxis, and motility processes |
Q34470763 | Identification of a Novel Small Non-Coding RNA Modulating the Intracellular Survival of Brucella melitensis |
Q46246177 | Identification of sRNA mediated responses to nutrient depletion in Burkholderia pseudomallei |
Q46851301 | Identification of small RNAs abundant in Burkholderia cenocepacia biofilms reveal putative regulators with a potential role in carbon and iron metabolism |
Q34740470 | Identifying and characterizing Hfq-RNA interactions |
Q47102732 | Impact of bacterial sRNAs in stress responses. |
Q43808341 | Improving E. coli growth performance by manipulating small RNA expression. |
Q64110598 | Insights Into Non-coding RNAs as Novel Antimicrobial Drugs |
Q47849662 | Isobaric tags for relative and absolute quantitation proteomics analysis of gene regulation by SprC in Staphylococcus aureus |
Q38098474 | Licensing and due process in the turnover of bacterial RNA. |
Q42220662 | Light-Triggered RNA Annealing by an RNA Chaperone |
Q27311533 | Membrane recognition and dynamics of the RNA degradosome |
Q26863669 | MicroRNA in carcinogenesis & cancer diagnostics: a new paradigm |
Q34686600 | MicroRNA signatures of resveratrol in the ischemic heart |
Q34395461 | Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior |
Q38199289 | Ménage à trois: post-transcriptional control of the key enzyme for cell envelope synthesis by a base-pairing small RNA, an RNase adaptor protein, and a small RNA mimic |
Q28727945 | Non-coding RNA and its potential role in Mycobacterium tuberculosis pathogenesis |
Q92764979 | Oligoribonuclease Contributes to Tolerance to Aminoglycoside and β-Lactam Antibiotics by Regulating KatA in Pseudomonas aeruginosa |
Q89824505 | On a stake-out: Mycobacterial small RNA identification and regulation |
Q55283323 | Origin, Evolution, and Loss of Bacterial Small RNAs. |
Q26824966 | Phenotypic noise: effects of post-transcriptional regulatory processes affecting mRNA |
Q21144899 | Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB |
Q90560683 | Proteins That Chaperone RNA Regulation |
Q28714377 | Quantitative proteomic analysis of the Hfq-regulon in Sinorhizobium meliloti 2011 |
Q39436206 | RNA search engines empower the bacterial intranet |
Q89975694 | RNA-Sequencing Analyses of Small Bacterial RNAs and their Emergence as Virulence Factors in Host-Pathogen Interactions |
Q45095625 | RNAs: regulators of bacterial virulence |
Q35088007 | Rapid binding and release of Hfq from ternary complexes during RNA annealing |
Q46091999 | Rationally designed families of orthogonal RNA regulators of translation |
Q27009044 | Regulation by small RNAs in bacteria: expanding frontiers |
Q34534236 | Regulation of a polyamine transporter by the conserved 3' UTR-derived sRNA SorX confers resistance to singlet oxygen and organic hydroperoxides in Rhodobacter sphaeroides |
Q26852008 | Regulation of bacterial virulence by Csr (Rsm) systems |
Q38435296 | Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression. |
Q38819727 | Regulatory mechanisms related to biofuel tolerance in producing microbes |
Q26767390 | Riboregulators: Fine-Tuning Virulence in Shigella |
Q37676227 | Sibling sRNA RyfA1 Influences Shigella dysenteriae Pathogenesis |
Q35696021 | Small RNA Transcriptome of the Oral Microbiome during Periodontitis Progression |
Q28284168 | Small RNA modules confer different stabilities and interact differently with multiple targets |
Q38187359 | Small RNA regulators in bacteria: powerful tools for metabolic engineering and synthetic biology |
Q21131371 | Small RNA sX13: a multifaceted regulator of virulence in the plant pathogen Xanthomonas |
Q36008348 | Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella |
Q28288849 | Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis |
Q90060039 | Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM |
Q38062239 | Small RNAs and their role in biofilm formation |
Q96954783 | Small RNAs as Fundamental Players in the Transference of Information During Bacterial Infectious Diseases |
Q37878988 | Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species |
Q28243536 | Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon |
Q27026497 | Small RNAs in the Vibrionaceae: an ocean still to be explored |
Q95355807 | Small RNAs of Borrelia burgdorferi: Characterizing Functional Regulators in a Sea of sRNAs |
Q38084831 | Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella |
Q27311408 | Small regulatory RNA-induced growth rate heterogeneity of Bacillus subtilis |
Q42500644 | Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli. |
Q34254544 | Small regulatory RNAs in Pseudomonas aeruginosa |
Q35178902 | Stabilization of perturbed Boolean network attractors through compensatory interactions |
Q44978997 | Stochastic modeling of regulation of gene expression by multiple small RNAs |
Q42324804 | Structural flexibility of RNA as molecular basis for Hfq chaperone function |
Q90068768 | Surface association sensitizes Pseudomonas aeruginosa to quorum sensing |
Q35569225 | Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics |
Q28081126 | Target activation by regulatory RNAs in bacteria |
Q44821305 | Target evaluation of the non-coding csRNAs reveals a link of the two-component regulatory system CiaRH to competence control in Streptococcus pneumoniae R6. |
Q36240637 | Temperature-dependent sRNA transcriptome of the Lyme disease spirochete |
Q41934938 | The Cpx envelope stress response regulates and is regulated by small noncoding RNAs. |
Q36114219 | The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium. |
Q37076396 | The RNA Chaperone Hfq Is Essential for Virulence and Modulates the Expression of Four Adhesins in Yersinia enterocolitica |
Q55257498 | The Small RNA ErsA of Pseudomonas aeruginosa Contributes to Biofilm Development and Motility through Post-transcriptional Modulation of AmrZ. |
Q48188896 | The Small RNA ncS35 Regulates Growth in Burkholderia cenocepacia J2315. |
Q47161340 | The Small Regulatory RNA Spot42 Inhibits Indole Biosynthesis to Negatively Regulate the Locus of Enterocyte Effacement of Enteropathogenic Escherichia coli |
Q33851489 | The Staphylococcus aureus RNome and its commitment to virulence |
Q28067397 | The Tip of the Iceberg: On the Roles of Regulatory Small RNAs in the Virulence of Enterohemorrhagic and Enteropathogenic Escherichia coli |
Q37995707 | The bacterial protein Hfq: much more than a mere RNA-binding factor |
Q24622607 | The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli |
Q54340513 | The csgD mRNA as a hub for signal integration via multiple small RNAs. |
Q28392956 | The impracticality of biomedical rejuvenation therapies: translational and pharmacological barriers |
Q36180214 | The magnitude and colour of noise in genetic negative feedback systems |
Q50030555 | The small RNA RybA regulates key-genes in the biosynthesis of aromatic amino acids under peroxide stress in E. coli. |
Q28277062 | The target spectrum of SdsR small RNA in Salmonella |
Q37210945 | Transcript degradation and noise of small RNA-controlled genes in a switch activated network in Escherichia coli |
Q60301212 | Transcriptional profiling of the mutualistic bacterium and an mutant under modeled microgravity |
Q27016195 | Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori |
Q37689700 | Transcriptomic analysis of staphylococcal sRNAs: insights into species-specific adaption and the evolution of pathogenesis. |
Q36340099 | Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence |
Q37522931 | Unexpected properties of sRNA promoters allow feedback control via regulation of a two-component system |
Q41408667 | Unusually high-affinity Mg(2+) binding at the AU-rich sequence within the antiterminator hairpin of a Mg(2+) riboswitch. |
Q33907606 | Using DNA microarrays to assay part function |
Q57340329 | Variations on transcriptional and post-transcriptional processes in bacteria |
Q47692283 | When eukaryotes and prokaryotes look alike: the case of regulatory RNAs. |
Q36320820 | rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining |
Q30017317 | sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1 |
Search more.