| scholarly article | Q13442814 |
| P2093 | author name string | Rahul Raghavan | |
| H Auguste Dutcher | |||
| P2860 | cites work | Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae | Q41431667 |
| Divergence of functional effects among bacterial sRNA paralogs | Q41498041 | ||
| A transposon-derived small RNA regulates gene expression in Salmonella Typhimurium | Q41854791 | ||
| New microRNAs in Drosophila--birth, death and cycles of adaptive evolution. | Q41888198 | ||
| Pervasive transcription: detecting functional RNAs in bacteria | Q41952130 | ||
| Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions | Q42064272 | ||
| Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions | Q42706878 | ||
| Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria | Q46260153 | ||
| Emergence of New sRNAs in Enteric Bacteria is Associated with Low Expression and Rapid Evolution | Q48281391 | ||
| Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs | Q48698785 | ||
| Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism. | Q52401284 | ||
| Mammalian microRNAs derived from genomic repeats | Q57372645 | ||
| Sibling rivalry: related bacterial small RNAs and their redundant and non-redundant roles | Q21131292 | ||
| A Staphylococcus aureus small RNA is required for bacterial virulence and regulates the expression of an immune-evasion molecule | Q21131553 | ||
| A family of human microRNA genes from miniature inverted-repeat transposable elements | Q21144764 | ||
| The evolutionary origin of orphan genes | Q22122002 | ||
| Lateral gene transfer and the nature of bacterial innovation | Q22122396 | ||
| Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation | Q24490182 | ||
| A benchmark of multiple sequence alignment programs upon structural RNAs | Q24523666 | ||
| A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli | Q24536169 | ||
| Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. | Q24536474 | ||
| Molecular evolutionary relationships of enteroinvasive Escherichia coli and Shigella spp | Q24561659 | ||
| Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis | Q24561961 | ||
| Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence | Q24641915 | ||
| A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles | Q24647335 | ||
| Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics | Q24653390 | ||
| Regulation by small RNAs in bacteria: expanding frontiers | Q27009044 | ||
| Genes from scratch--the evolutionary fate of de novo genes | Q27009472 | ||
| Grad-seq guides the discovery of ProQ as a major small RNA-binding protein | Q27243322 | ||
| A Salmonella small non-coding RNA facilitates bacterial invasion and intracellular replication by modulating the expression of virulence factors | Q27349443 | ||
| Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching | Q27680705 | ||
| Bacterial small RNA regulators: versatile roles and rapidly evolving variations | Q27692531 | ||
| The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae | Q28270975 | ||
| Effect of RyhB small RNA on global iron use in Escherichia coli | Q28275120 | ||
| Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA | Q28286931 | ||
| Comparative analysis of RNA families reveals distinct repertoires for each domain of life | Q28484799 | ||
| Emergence of a new gene from an intergenic region | Q28509330 | ||
| Bacterial adaptation through loss of function | Q28534615 | ||
| Rfam 12.0: updates to the RNA families database | Q28650460 | ||
| Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling | Q28652954 | ||
| The evolution of gene regulation by transcription factors and microRNAs | Q29617552 | ||
| Selection for unequal densities of sigma70 promoter-like signals in different regions of large bacterial genomes | Q33263258 | ||
| A Review on Recent Computational Methods for Predicting Noncoding RNAs. | Q33695729 | ||
| Pathoadaptive mutations that enhance virulence: genetic organization of the cadA regions of Shigella spp. | Q34009693 | ||
| An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs | Q34033315 | ||
| sRNAs in bacterial type I and type III toxin-antitoxin systems | Q34043559 | ||
| Base pairing small RNAs and their roles in global regulatory networks | Q34061171 | ||
| Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation | Q34122762 | ||
| Origins, evolution, and phenotypic impact of new genes. | Q34153587 | ||
| Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein | Q34164476 | ||
| Evolution of viral proteins originated de novo by overprinting | Q34289647 | ||
| Selection-driven gene loss in bacteria | Q34325560 | ||
| Dual function of the McaS small RNA in controlling biofilm formation | Q34344239 | ||
| Shigella and enteroinvasive Escherichia coli strains are derived from distinct ancestral strains of E. coli | Q34476300 | ||
| The Pfam protein families database: towards a more sustainable future | Q34505322 | ||
| Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity | Q34510047 | ||
| Novel genes exhibit distinct patterns of function acquisition and network integration | Q34613793 | ||
| Microevolution of nematode miRNAs reveals diverse modes of selection | Q34631747 | ||
| Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti. | Q34837547 | ||
| A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics. | Q35036974 | ||
| Genome rearrangements can make and break small RNA genes | Q35149048 | ||
| How do base-pairing small RNAs evolve? | Q35620619 | ||
| Origin and evolution of human microRNAs from transposable elements. | Q35846296 | ||
| A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli. | Q35854632 | ||
| Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella genomes | Q35867666 | ||
| Gifsy-1 Prophage IsrK with Dual Function as Small and Messenger RNA Modulates Vital Bacterial Machineries | Q35983412 | ||
| CRISPR Perturbation of Gene Expression Alters Bacterial Fitness under Stress and Reveals Underlying Epistatic Constraints | Q36104895 | ||
| Shigella spp. and enteroinvasive Escherichia coli pathogenicity factors | Q36267084 | ||
| A recently active miniature inverted-repeat transposable element, Chunjie, inserted into an operon without disturbing the operon structure in Geobacter uraniireducens Rf4 | Q36837141 | ||
| RaoN, a small RNA encoded within Salmonella pathogenicity island-11, confers resistance to macrophage-induced stress | Q37111565 | ||
| Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level | Q37444341 | ||
| Differentiation between Shigella, enteroinvasive Escherichia coli (EIEC) and noninvasive Escherichia coli | Q37929056 | ||
| Integration of Bacterial Small RNAs in Regulatory Networks | Q39322755 | ||
| Molecular mechanism of mRNA repression in trans by a ProQ-dependent small RNA. | Q40280690 | ||
| Accessibility and conservation: general features of bacterial small RNA-mRNA interactions? | Q41229189 | ||
| P433 | issue | 2 | |
| P921 | main subject | bacterial evolution | Q115395667 |
| P577 | publication date | 2018-04-01 | |
| P1433 | published in | Microbiology Spectrum | Q27725717 |
| P1476 | title | Origin, Evolution, and Loss of Bacterial Small RNAs. | |
| P478 | volume | 6 |
| Q90148492 | Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples |
| Q99407070 | Are Antisense Proteins in Prokaryotes Functional? |
| Q64019871 | Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq |
| Q90242970 | Transcription elements AREB6 and miR-34a affect apoptosis of PAMs by regulating the expression of SS2-related gene PPP1R11 |
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