| scholarly article | Q13442814 |
| P2093 | author name string | Andreas Wagner | |
| David Karlin | |||
| Niv Sabath | |||
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| Evolution and tinkering | Q28276084 | ||
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| Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level | Q29547731 | ||
| BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data | Q29614291 | ||
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| The Contribution of the PB1-F2 Protein to the Fitness of Influenza A Viruses and its Recent Evolution in the 2009 Influenza A (H1N1) Pandemic Virus. | Q30383785 | ||
| Are viruses a source of new protein folds for organisms? - Virosphere structure space and evolution | Q30403366 | ||
| Isolation and characterization of the major protein and glycoprotein of hepatitis B surface antigen | Q30415866 | ||
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| National center for biotechnology information viral genomes project | Q33204252 | ||
| A method for the simultaneous estimation of selection intensities in overlapping genes | Q33394769 | ||
| How do new proteins arise? | Q33546902 | ||
| A human-specific de novo protein-coding gene associated with human brain functions | Q33550753 | ||
| Evidence for a novel coding sequence overlapping the 5'-terminal approximately 90 codons of the gill-associated and yellow head okavirus envelope glycoprotein gene | Q33587239 | ||
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| Theiler's murine encephalomyelitis virus L* amino acid position 93 is important for virus persistence and virus-induced demyelination | Q33614386 | ||
| Candidates in Astroviruses, Seadornaviruses, Cytorhabdoviruses and Coronaviruses for +1 frame overlapping genes accessed by leaky scanning | Q33706150 | ||
| Ilarviruses encode a Cucumovirus-like 2b gene that is absent in other genera within the Bromoviridae | Q33783703 | ||
| A protein critical for a Theiler's virus-induced immune system-mediated demyelinating disease has a cell type-specific antiapoptotic effect and a key role in virus persistence | Q33785219 | ||
| The nucleocapsid protein gene of bovine coronavirus is bicistronic | Q33934903 | ||
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| Detection of functional overlapping genes: simulation and case studies | Q34274599 | ||
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| Virus counterdefense: diverse strategies for evading the RNA-silencing immunity | Q36503722 | ||
| An overlapping essential gene in the Potyviridae | Q36557983 | ||
| Current topics in genome evolution: molecular mechanisms of new gene formation | Q36694136 | ||
| Analysis of the coding potential of the partially overlapping 3' ORF in segment 5 of the plant fijiviruses | Q37152977 | ||
| ANNIE: integrated de novo protein sequence annotation | Q37245658 | ||
| Investigating protein-coding sequence evolution with probabilistic codon substitution models | Q37298963 | ||
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| A potentially novel overlapping gene in the genomes of Israeli acute paralysis virus and its relatives | Q37368606 | ||
| The pre-S1 and antigenic loop infectivity determinants of the hepatitis B virus envelope proteins are functionally independent | Q37451938 | ||
| Current knowledge on PB1-F2 of influenza A viruses | Q37800816 | ||
| Bioinformatic analysis suggests that the Cypovirus 1 major core protein cistron harbours an overlapping gene | Q38792943 | ||
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| The proapoptotic influenza A virus protein PB1-F2 regulates viral polymerase activity by interaction with the PB1 protein | Q40027289 | ||
| Characterization of V protein in measles virus-infected cells | Q40066753 | ||
| Infectious TYMV RNA from cloned cDNA: effects in vitro and in vivo of point substitutions in the initiation codons of two extensively overlapping ORFs. | Q40450654 | ||
| Conserved and non-conserved regions in the Sendai virus genome: evolution of a gene possessing overlapping reading frames | Q40723718 | ||
| Relative codon adaptation index, a sensitive measure of codon usage bias. | Q40886512 | ||
| V and C proteins of measles virus function as virulence factors in vivo | Q40903850 | ||
| Sequence of RNA2 of the Helicoverpa armigera stunt virus (Tetraviridae) and bacterial expression of its genes. | Q42066561 | ||
| Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation | Q42570606 | ||
| Genetic variability of natural populations of cotton leaf curl geminivirus, a single-stranded DNA virus | Q42613211 | ||
| Complementation and characterization of the nested Rz and Rz1 reading frames in the genome of bacteriophage lambda | Q42616873 | ||
| Maize chlorotic mottle machlomovirus expresses its coat protein from a 1.47-kb subgenomic RNA and makes a 0.34-kb subgenomic RNA. | Q42617744 | ||
| Constrained evolution with respect to gene overlap of hepatitis B virus | Q42651913 | ||
| Overlapping reading frames in closely related human papillomaviruses result in modular rates of selection within E2. | Q42653597 | ||
| Patterns of nucleotide difference in overlapping and non-overlapping reading frames of papillomavirus genomes | Q42657502 | ||
| Bioinformatic analysis suggests that a conserved ORF in the waikaviruses encodes an overlapping gene | Q42658197 | ||
| Sequence variability and evolution of the terminal overlapping VP5 gene of the infectious bursal disease virus | Q42659158 | ||
| A picornaviral protein synthesized out of frame with the polyprotein plays a key role in a virus-induced immune-mediated demyelinating disease. | Q42677791 | ||
| De novo origin of new genes with introns in Plasmodium vivax | Q42686563 | ||
| P433 | issue | 12 | |
| P921 | main subject | protein evolution | Q59870539 |
| P304 | page(s) | 3767-3780 | |
| P577 | publication date | 2012-07-19 | |
| P1433 | published in | Molecular Biology and Evolution | Q1992656 |
| P1476 | title | Evolution of viral proteins originated de novo by overprinting | |
| P478 | volume | 29 |
| Q47190146 | A Comprehensive Analysis of Transcript-Supported De Novo Genes in Saccharomyces sensu stricto Yeasts |
| Q91711513 | A Novel pH-Regulated, Unusual 603 bp Overlapping Protein Coding Gene pop Is Encoded Antisense to ompA in Escherichia coli O157:H7 (EHEC) |
| Q58796498 | A Simple Method to Detect Candidate Overlapping Genes in Viruses Using Single Genome Sequences |
| Q37164702 | A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing |
| Q35047594 | A simple method for estimating the strength of natural selection on overlapping genes |
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| Q86320144 | De novo gene birth |
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| Q41164290 | Limited variation during circulation of a polyomavirus in the human population involves the COCO-VA toggling site of Middle and Alternative T-antigen(s). |
| Q46246927 | Living Organisms Author Their Read-Write Genomes in Evolution |
| Q41895260 | Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses |
| Q34552784 | Multiple origins of viral capsid proteins from cellular ancestors |
| Q35254405 | NCBI viral genomes resource |
| Q34802805 | New gene evolution: little did we know |
| Q26795688 | New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation |
| Q95839248 | New insights into the evolutionary features of viral overlapping genes by discriminant analysis |
| Q40807944 | ORF43 of maize rayado fino virus is dispensable for systemic infection of maize and transmission by leafhoppers |
| Q41864017 | Origin and length distribution of unidirectional prokaryotic overlapping genes |
| Q92382766 | Origin of viruses: primordial replicators recruiting capsids from hosts |
| Q55283323 | Origin, Evolution, and Loss of Bacterial Small RNAs. |
| Q58590580 | Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes |
| Q34329311 | Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution |
| Q30384425 | Positive Selection or Free to Vary? Assessing the Functional Significance of Sequence Change Using Molecular Dynamics |
| Q89768906 | Properties and abundance of overlapping genes in viruses |
| Q37721480 | The Evolution and Expression Pattern of Human Overlapping lncRNA and Protein-coding Gene Pairs |
| Q92756067 | The HIV-1 Antisense Protein ASP Is a Transmembrane Protein of the Cell Surface and an Integral Protein of the Viral Envelope |
| Q92921538 | The Potyviruses: An Evolutionary Synthesis Is Emerging |
| Q34961642 | Viral proteins originated de novo by overprinting can be identified by codon usage: application to the "gene nursery" of Deltaretroviruses |
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