Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli

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Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli is …
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scholarly articleQ13442814

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P356DOI10.1074/JBC.M109.089755
P3181OpenCitations bibliographic resource ID4343265
P932PMC publication ID2856277
P698PubMed publication ID20075074
P5875ResearchGate publication ID41028125

P50authorMartin OvergaardQ56167048
Anders BoysenQ59685448
Jakob Møller-JensenQ63729851
Birgitte H KallipolitisQ37378807
P2093author name stringPoul Valentin-Hansen
P2860cites workDeep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, HfqQ21145046
Mfold web server for nucleic acid folding and hybridization predictionQ24498105
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like proteinQ24536928
Regulatory RNAs in bacteriaQ24595082
Identification of novel small RNAs using comparative genomics and microarraysQ24601229
Reprogramming of anaerobic metabolism by the FnrS small RNAQ24606364
MicroRNAs: target recognition and regulatory functionsQ24609584
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coliQ24684800
Translational control and target recognition by Escherichia coli small RNAs in vivoQ24684847
Protein thiol modifications visualized in vivoQ24797314
Oxidative stress inactivates cobalamin-independent methionine synthase (MetE) in Escherichia coliQ24797342
Structure of Escherichia coli Hfq bound to polyriboadenylate RNAQ27658064
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factorsQ28198553
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
A conserved small RNA promotes silencing of the outer membrane protein YbfMQ28243094
Micros for microbes: non-coding regulatory RNAs in bacteriaQ28252632
Switching off small RNA regulation with trap-mRNAQ28255082
Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesisQ28275777
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAsQ28287313
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNAQ28288672
Physiological consequences of small RNA-mediated regulation of glucose-phosphate stressQ28294772
Mechanism of RNA silencing by Hfq-binding small RNAsQ28294833
A rough guide to the non-coding RNA world of SalmonellaQ28300754
TM4 microarray software suiteQ29618829
Two-dimensional gel electrophoretic analysis of Escherichia coli proteins: influence of various anaerobic growth conditions and the fnr gene product on cellular protein composition.Q54757275
ThecydDgene product, component of a heterodimeric ABC transporter, is required for assembly of periplasmic cytochromecand of cytochromebdinEscherichia coliQ56029403
Functional differences between manganese and iron superoxide dismutases in Escherichia coli K-12Q67945529
A mutation suppressing streptomycin dependence. I. An effect on ribosome functionQ71212006
The Escherichia coli relBE genes belong to a new toxin-antitoxin gene familyQ77394553
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interactionQ29619904
The bacterial Sm-like protein Hfq: a key player in RNA transactionsQ29620062
Regulatory small RNAs circumvent the conventional quorum sensing pathway in pandemic Vibrio cholerae.Q30362198
Improved silver staining protocols for high sensitivity protein identification using matrix-assisted laser desorption/ionization-time of flight analysisQ30829061
Transcription activation by Escherichia coli FNR protein: similarities to, and differences from, the CRP paradigmQ32067545
A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptidesQ33738360
Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown functionQ33758150
Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulatorQ34107548
The cydD gene product, component of a heterodimeric ABC transporter, is required for assembly of periplasmic cytochrome c and of cytochrome bd in Escherichia coliQ34341059
Programmed cell death by hok/sok of plasmid R1: processing at the hok mRNA 3'-end triggers structural rearrangements that allow translation and antisense RNA bindingQ34446144
Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA.Q35658284
Interaction of six global transcription regulators in expression of manganese superoxide dismutase in Escherichia coli K-12.Q36087226
Iron-sulfur cluster disassembly in the FNR protein of Escherichia coli by O2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity.Q36178956
Proteins induced by anaerobiosis in Escherichia coliQ36327219
Comparison of the proteomes of three yeast wild type strains: CEN.PK2, FY1679 and W303.Q36748264
Small RNAs controlling outer membrane porinsQ36763357
Small RNAs controlling iron metabolismQ36769261
Hfq structure, function and ligand bindingQ36774884
Regulatory roles of Fnr, Fur, and Arc in expression of manganese-containing superoxide dismutase in Escherichia coliQ36943920
The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behaviorQ37051352
Isolation of an oxygen-sensitive FNR protein of Escherichia coli: interaction at activator and repressor sites of FNR-controlled genesQ37735125
Transcription factor distribution in Escherichia coli: studies with FNR protein.Q38306585
A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growthQ38317337
A bacterial glutathione transporter (Escherichia coli CydDC) exports reductant to the periplasmQ38323291
Transcriptional regulation of the cydDC operon, encoding a heterodimeric ABC transporter required for assembly of cytochromes c and bd in Escherichia coli K-12: regulation by oxygen and alternative electron acceptorsQ39847649
A green fluorescent protein (GFP)-based plasmid system to study post-transcriptional control of gene expression in vivoQ39881894
Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR.Q42599502
Quinones as the redox signal for the arc two-component system of bacteriaQ43652042
Characterization of regulatory mutations causing anaerobic derepression of the sodA gene in Escherichia coli K12: cooperation between cis- and trans-acting regulatory lociQ44865058
Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case.Q45958746
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Anaerobic activation of arcA transcription in Escherichia coli: roles of Fnr and ArcA.Q48084640
Escherichia coli transcriptome dynamics during the transition from anaerobic to aerobic conditions.Q50722060
Messenger RNA interferase RelE controls relBE transcription by conditional cooperativity.Q54421444
Novel surface polypeptides of Campylobacter jejuni as traveller's diarrhoea vaccine candidates discovered by proteomics.Q54460650
DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen.Q54593893
P433issue14
P407language of work or nameEnglishQ1860
P921main subjectcell biologyQ7141
Escherichia coliQ25419
non-coding RNAQ427087
P304page(s)10690-10702
P577publication date2010-01-14
P1433published inJournal of Biological ChemistryQ867727
P1476titleTranslational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli
P478volume285

Reverse relations

cites work (P2860)
Q28255704A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
Q28244120A multicopy sRNA of Listeria monocytogenes regulates expression of the virulence adhesin LapB
Q35854632A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli.
Q61811364A variant of the Escherichia coli anaerobic transcription factor FNR exhibiting diminished promoter activation function enhances ionizing radiation resistance
Q42706878Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions
Q90148492Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples
Q34033315An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs
Q27692531Bacterial small RNA regulators: versatile roles and rapidly evolving variations
Q34061171Base pairing small RNAs and their roles in global regulatory networks
Q38340396C-Terminally Truncated Derivatives of Escherichia coli Hfq Are Proficient in Riboregulation
Q37122150Co-expression of RNA-protein complexes in Escherichia coli and applications to RNA biology
Q24621557Comparative genomics boosts target prediction for bacterial small RNAs
Q37168664DamX Controls Reversible Cell Morphology Switching in Uropathogenic Escherichia coli
Q33798568Deep sequencing-based analysis of the anaerobic stimulon in Neisseria gonorrhoeae
Q90914731Development of a synthetic live bacterial therapeutic for the human metabolic disease phenylketonuria
Q42775531Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli
Q41498041Divergence of functional effects among bacterial sRNA paralogs
Q28297881Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
Q34206788Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria
Q24622806Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
Q36001671Explicit hypoxia targeting with tumor suppression by creating an "obligate" anaerobic Salmonella Typhimurium strain
Q34789412Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding.
Q34888345Genome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions
Q29346753Global analysis of the regulon of the transcriptional repressor LexA, a key component of SOS response in Mycobacterium tuberculosis.
Q57170400HldE Is Important for Virulence Phenotypes in Enterotoxigenic
Q96126440Immunotherapy with engineered bacteria by targeting the STING pathway for anti-tumor immunity
Q43808341Improving E. coli growth performance by manipulating small RNA expression.
Q57039543In silico 'fishing' using known small regulatory RNA (sRNA) candidates as the decoy from Escherichia coli, Salmonella typhi and Salmonella typhimurium manifested 14 novel sRNA candidates in the orthologous region of Proteus mirabilis
Q30155524In vivo versus in vitro protein abundance analysis of Shigella dysenteriae type 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism
Q50043209Interesting twists on small RNA themes in Pseudomonas aeruginosa
Q37835536Iron-containing transcription factors and their roles as sensors
Q93366073Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium
Q43576806Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.
Q34526027Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA.
Q24606364Reprogramming of anaerobic metabolism by the FnrS small RNA
Q34094698Resistance to topoisomerase cleavage complex induced lethality in Escherichia coli via titration of transcription regulators PurR and FNR.
Q42500644Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli.
Q40472328Strategies for manipulation of oxygen utilization by the electron transfer chain in microbes for metabolic engineering purposes.
Q28081126Target activation by regulatory RNAs in bacteria
Q47157269The Anaerobically Induced sRNA PaiI Affects Denitrification in Pseudomonas aeruginosa PA14.
Q29346718The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets
Q35022310The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally
Q24622607The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli
Q28058215The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal
Q34243882Transcriptional portrait of Actinobacillus pleuropneumoniae during acute disease--potential strategies for survival and persistence in the host
Q24490214dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42
Q36320820rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining
Q35751282sRNA-Mediated Regulation of P-Fimbriae Phase Variation in Uropathogenic Escherichia coli.
Q24597091sRNAs and the virulence of Salmonella enterica serovar Typhimurium

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