| scholarly article | Q13442814 |
| P50 | author | James M Slauch | Q54142755 |
| Carin K Vanderpool | Q92147483 | ||
| P2093 | author name string | Yekaterina A Golubeva | |
| Kyungsub Kim | |||
| P2860 | cites work | Mfold web server for nucleic acid folding and hybridization prediction | Q24498105 |
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| The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes | Q24598644 | ||
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| DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription | Q24645477 | ||
| IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions | Q24655171 | ||
| RNAhybrid: microRNA target prediction easy, fast and flexible | Q24680189 | ||
| The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium | Q24683356 | ||
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| Regulation by small RNAs in bacteria: expanding frontiers | Q27009044 | ||
| Sites of organic acid production and absorption in the equine gastrointestinal tract | Q47874991 | ||
| Construction of targeted single copy lac fusions using lambda Red and FLP-mediated site-specific recombination in bacteria | Q48298401 | ||
| Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth | Q49587782 | ||
| HilE Regulates HilD by Blocking DNA Binding in Salmonella enterica serovar Typhimurium | Q49597228 | ||
| Genetic Ablation of Butyrate Utilization Attenuates Gastrointestinal Salmonella Disease. | Q49923752 | ||
| Hfq and ArcA are involved in the stationary phase-dependent activation of Salmonella pathogenicity island 1 (SPI1) under shaking culture conditions | Q50010479 | ||
| Co-ordinate regulation of Salmonella typhimurium invasion genes by environmental and regulatory factors is mediated by control of hilA expression | Q50136962 | ||
| Preferential interaction of Salmonella typhimurium with mouse Peyer's patch M cells | Q50147225 | ||
| An overlap between osmotic and anaerobic stress responses: a potential role for DNA supercoiling in the coordinate regulation of gene expression | Q50194798 | ||
| Microbes vs. chemistry in the origin of the anaerobic gut lumen. | Q51730655 | ||
| CRP-cAMP mediates silencing of Salmonella virulence at the post-transcriptional level. | Q55160826 | ||
| Poly(A) polymerase is required for RyhB sRNA stability and function in | Q58702556 | ||
| Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3′ Ends | Q62762453 | ||
| The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo | Q78016733 | ||
| Bacterial RNA isolation | Q95404809 | ||
| Grad-seq guides the discovery of ProQ as a major small RNA-binding protein | Q27243322 | ||
| One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products | Q27860842 | ||
| Regulation of RpoS by a novel small RNA: the characterization of RprA | Q28204998 | ||
| A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system | Q28244233 | ||
| Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA | Q28257497 | ||
| Effect of RyhB small RNA on global iron use in Escherichia coli | Q28275120 | ||
| Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA | Q28289704 | ||
| Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system | Q28291273 | ||
| Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS | Q28293533 | ||
| A rough guide to the non-coding RNA world of Salmonella | Q28300754 | ||
| In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways | Q28583172 | ||
| An efficient recombination system for chromosome engineering in Escherichia coli | Q29615038 | ||
| Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant | Q29615039 | ||
| Gut inflammation provides a respiratory electron acceptor for Salmonella | Q29615318 | ||
| Hfq and its constellation of RNA | Q29615791 | ||
| Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction | Q29619904 | ||
| DNA-binding activities of the HilC and HilD virulence regulatory proteins of Salmonella enterica serovar Typhimurium | Q30309622 | ||
| Crucial roles of both flanking sequences in silencing of the hilA promoter in Salmonella enterica | Q30439357 | ||
| Role of nucleoid-associated proteins Hha and H-NS in expression of Salmonella enterica activators HilD, HilC, and RtsA required for cell invasion | Q30443796 | ||
| The global regulator ArcA controls resistance to reactive nitrogen and oxygen intermediates in Salmonella enterica serovar Enteritidis | Q31034939 | ||
| Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar Typhimurium. | Q33585337 | ||
| Osmolarity and growth phase overlap in regulation of Salmonella typhi adherence to and invasion of human intestinal cells | Q33603552 | ||
| The ability of Salmonella to enter mammalian cells is affected by bacterial growth state | Q33616743 | ||
| Type III secretion machines: bacterial devices for protein delivery into host cells | Q33639326 | ||
| The role of coupled positive feedback in the expression of the SPI1 type three secretion system in Salmonella | Q33649749 | ||
| Mechanisms for redox control of gene expression | Q33765970 | ||
| Signal transduction pathway mediated by the novel regulator LoiA for low oxygen tension induced Salmonella Typhimurium invasion | Q33811877 | ||
| Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in vivo and in vitro | Q33900474 | ||
| InvF is required for expression of genes encoding proteins secreted by the SPI1 type III secretion apparatus in Salmonella typhimurium | Q33992712 | ||
| Differential regulation of Salmonella typhimurium type III secreted proteins by pathogenicity island 1 (SPI-1)-encoded transcriptional activators InvF and hilA. | Q34001486 | ||
| A eukaryotic-like 3' untranslated region in Salmonella enterica hilD mRNA. | Q34040392 | ||
| Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator | Q34107548 | ||
| Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation | Q34192636 | ||
| The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. | Q34248983 | ||
| Bacterial small RNA-based negative regulation: Hfq and its accomplices | Q34325200 | ||
| SitABCD is the alkaline Mn(2+) transporter of Salmonella enterica serovar Typhimurium | Q39679341 | ||
| Integrating global regulatory input into the Salmonella pathogenicity island 1 type III secretion system | Q39694438 | ||
| HilD, HilC and RtsA constitute a feed forward loop that controls expression of the SPI1 type three secretion system regulator hilA in Salmonella enterica serovar Typhimurium. | Q40402350 | ||
| Non-invasive Salmonella typhimurium mutants are avirulent because of an inability to enter and destroy M cells of ileal Peyer's patches | Q40651358 | ||
| Intestinal short-chain fatty acids alter Salmonella typhimurium invasion gene expression and virulence through BarA/SirA. | Q40687509 | ||
| Low-oxygen tensions found in Salmonella-infected gut tissue boost Salmonella replication in macrophages by impairing antimicrobial activity and augmenting Salmonella virulence | Q40806770 | ||
| Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR and Fur | Q40947162 | ||
| Transcript profiling and inference of Escherichia coli K-12 ArcA activity across the range of physiologically relevant oxygen concentrations | Q41826751 | ||
| Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD. | Q41911664 | ||
| Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage | Q41912798 | ||
| Characterization of the role of ribonucleases in Salmonella small RNA decay | Q42059829 | ||
| Fur negatively regulates hns and is required for the expression of HilA and virulence in Salmonella enterica serovar Typhimurium | Q42115848 | ||
| FliZ Regulates Expression of theSalmonellaPathogenicity Island 1 Invasion Locus by Controlling HilD Protein Activity inSalmonella entericaSerovar Typhimurium | Q42162171 | ||
| An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium | Q42774408 | ||
| Quinones as the redox signal for the arc two-component system of bacteria | Q43652042 | ||
| Fur-DNA interactions at the bidirectional fepDGC-entS promoter region in Escherichia coli. | Q44169818 | ||
| Comparison of fermentation reactions in different regions of the human colon | Q44631063 | ||
| Salmonella interactions with host cells: type III secretion at work | Q34425135 | ||
| Role of oxygen gradients in shaping redox relationships between the human intestine and its microbiota | Q34467654 | ||
| The role of M cells in Salmonella infection | Q34469750 | ||
| Short chain fatty acids in human large intestine, portal, hepatic and venous blood | Q34529426 | ||
| Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota. | Q34614760 | ||
| HilE interacts with HilD and negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype. | Q34714166 | ||
| Pretreatment of mice with streptomycin provides a Salmonella enterica serovar Typhimurium colitis model that allows analysis of both pathogen and host | Q34935646 | ||
| Activation of gene expression by small RNA. | Q35010723 | ||
| Integration of a complex regulatory cascade involving the SirA/BarA and Csr global regulatory systems that controls expression of the Salmonella SPI-1 and SPI-2 virulence regulons through HilD | Q35049823 | ||
| Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota | Q35409022 | ||
| Effect of microaerophilic cell growth conditions on expression of the aerobic (cyoABCDE and cydAB) and anaerobic (narGHJI, frdABCD, and dmsABC) respiratory pathway genes in Escherichia coli | Q35602704 | ||
| Salmonella-induced M-cell formation in germ-free mouse Peyer's patch tissue | Q35830570 | ||
| RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium | Q35839664 | ||
| Phage-mediated acquisition of a type III secreted effector protein boosts growth of salmonella by nitrate respiration | Q36029218 | ||
| Salmonella invasion gene regulation: a story of environmental awareness | Q36070053 | ||
| The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium. | Q36114219 | ||
| cis-acting ompF mutations that result in OmpR-dependent constitutive expression | Q36148065 | ||
| Iron-sulfur cluster disassembly in the FNR protein of Escherichia coli by O2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity. | Q36178956 | ||
| The phs gene and hydrogen sulfide production by Salmonella typhimurium | Q36236471 | ||
| Respiration of Microbiota-Derived 1,2-propanediol Drives Salmonella Expansion during Colitis. | Q36240466 | ||
| Intestinal Long-Chain Fatty Acids Act as a Direct Signal To Modulate Expression of the Salmonella Pathogenicity Island 1 Type III Secretion System | Q36577171 | ||
| The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD | Q36636799 | ||
| Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium. | Q36701362 | ||
| Effect of streptomycin administration on colonization resistance to Salmonella typhimurium in mice | Q37048358 | ||
| The role of microbiota in infectious disease | Q37086530 | ||
| Complex transcriptional and post-transcriptional regulation of an enzyme for lipopolysaccharide modification | Q37151759 | ||
| Twin-arginine translocation system (tat) mutants of Salmonella are attenuated due to envelope defects, not respiratory defects | Q37265066 | ||
| Host-derived nitrate boosts growth of E. coli in the inflamed gut | Q37731297 | ||
| New insights into small RNA-dependent translational regulation in prokaryotes | Q38058965 | ||
| Regulatory RNAs and target mRNA decay in prokaryotes. | Q38090281 | ||
| Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli | Q38230079 | ||
| FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s). | Q38305847 | ||
| Butyrate specifically down-regulates salmonella pathogenicity island 1 gene expression. | Q38317128 | ||
| Mechanistic study of base-pairing small regulatory RNAs in bacteria. | Q38969993 | ||
| P433 | issue | 3 | |
| P921 | main subject | Salmonella enterica | Q2264864 |
| P304 | page(s) | 570-587 | |
| P577 | publication date | 2018-12-12 | |
| P1433 | published in | Molecular Microbiology | Q6895967 |
| P1476 | title | Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium | |
| P478 | volume | 111 |
| Q92637046 | CRISPR-cas3 of Salmonella Upregulates Bacterial Biofilm Formation and Virulence to Host Cells by Targeting Quorum-Sensing Systems |
| Q93106825 | HilD induces expression of a novel Salmonella Typhimurium invasion factor, YobH, through a regulatory cascade involving SprB |
| Q89636193 | HilD, HilC, and RtsA Form Homodimers and Heterodimers to Regulate Expression of the Salmonella Pathogenicity Island I Type III Secretion System |
| Q92205829 | Iron availability and oxygen tension regulate the Yersinia Ysc type III secretion system to enable disseminated infection |
| Q92641059 | PhoP-Mediated Repression of the SPI1 Type 3 Secretion System in Salmonella enterica Serovar Typhimurium |
| Q92998597 | The sRNA DicF integrates oxygen sensing to enhance enterohemorrhagic Escherichia coli virulence via distinctive RNA control mechanisms |
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