| scholarly article | Q13442814 |
| P2093 | author name string | Aseem Z Ansari | |
| Patricia J Kiley | |||
| Md Sohail Akhtar | |||
| Robert Landick | |||
| Dan M Park | |||
| P2860 | cites work | Regulation of clock and NPAS2 DNA binding by the redox state of NAD cofactors | Q24291420 |
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| Crystal structure of the O(2)-tolerant membrane-bound hydrogenase 1 from Escherichia coli in complex with its cognate cytochrome b | Q27683625 | ||
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| Orf186 Represents a New Member of the Nudix Hydrolases, Active on Adenosine(5′)triphospho(5′)adenosine, ADP-ribose, and NADH | Q56904866 | ||
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| Transcriptional regulation of the divergent paa catabolic operons for phenylacetic acid degradation in Escherichia coli | Q73680660 | ||
| Tuning of the porin expression under anaerobic growth conditions by his-to-Asp cross-phosphorelay through both the EnvZ-osmosensor and ArcB-anaerosensor in Escherichia coli | Q74187539 | ||
| A mutational study of the ArcA-P binding sequences in the aldA promoter of Escherichia coli | Q74593273 | ||
| Co-regulation of lipoamide dehydrogenase and 2-oxoglutarate dehydrogenase synthesis in Escherichia coli: characterisation of an ArcA binding site in the lpd promoter | Q77735888 | ||
| Cross-induction of glc and ace operons of Escherichia coli attributable to pathway intersection. Characterization of the glc promoter | Q77765524 | ||
| Negative regulation of DNA repair gene (uvrA) expression by ArcA/ArcB two-component system in Escherichia coli | Q81157764 | ||
| 57 Sequencing end-labeled DNA with base-specific chemical cleavages | Q27860479 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| Fitting a mixture model by expectation maximization to discover motifs in biopolymers | Q27860556 | ||
| A comparison of normalization methods for high density oligonucleotide array data based on variance and bias | Q27860710 | ||
| One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products | Q27860842 | ||
| SOAP2: an improved ultrafast tool for short read alignment | Q28247469 | ||
| Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA | Q28257497 | ||
| Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA | Q28289704 | ||
| Redox balance is key to explaining full vs. partial switching to low-yield metabolism | Q29304928 | ||
| Variance stabilization applied to microarray data calibration and to the quantification of differential expression | Q29614492 | ||
| Redox environment of the cell as viewed through the redox state of the glutathione disulfide/glutathione couple | Q29615232 | ||
| Culture medium for enterobacteria | Q29616466 | ||
| Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example | Q30490235 | ||
| Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management | Q30788305 | ||
| A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data | Q33520370 | ||
| MochiView: versatile software for genome browsing and DNA motif analysis | Q33561311 | ||
| The Escherichia coli starvation gene cstC is involved in amino acid catabolism | Q33736036 | ||
| Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function | Q33758150 | ||
| Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium | Q33850379 | ||
| Regulation of corepressor function by nuclear NADH. | Q33957424 | ||
| The new life of a centenarian: signalling functions of NAD(P). | Q33976408 | ||
| Cra-dependent transcriptional activation of the icd gene of Escherichia coli. | Q33991145 | ||
| Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling | Q34388505 | ||
| Genome-wide PhoB binding and gene expression profiles reveal the hierarchical gene regulatory network of phosphate starvation in Escherichia coli. | Q34448182 | ||
| Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences | Q34641214 | ||
| Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding. | Q34789412 | ||
| YjdE (AdiC) is the arginine:agmatine antiporter essential for arginine-dependent acid resistance in Escherichia coli | Q35162120 | ||
| Transcriptional control mediated by the ArcA two-component response regulator protein of Escherichia coli: characterization of DNA binding at target promoters | Q35615681 | ||
| Aerobic regulation of isocitrate dehydrogenase gene (icd) expression in Escherichia coli by the arcA and fnr gene products | Q35625552 | ||
| Cyclic AMP receptor protein-dependent activation of the Escherichia coli acsP2 promoter by a synergistic class III mechanism | Q35662517 | ||
| Oxygen sensing and oxidant/redox-related pathways | Q35714756 | ||
| Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen. | Q35941062 | ||
| Respiration of Escherichia coli in the mouse intestine | Q36097255 | ||
| Effects of nitrate respiration on expression of the Arc-controlled operons encoding succinate dehydrogenase and flavin-linked L-lactate dehydrogenase | Q36106036 | ||
| Quinones as the redox signal for the arc two-component system of bacteria | Q43652042 | ||
| Repair of oxidized proteins. Identification of a new methionine sulfoxide reductase | Q43777329 | ||
| Expression of the Escherichia coli yfiD gene responds to intracellular pH and reduces the accumulation of acidic metabolic end products | Q43946980 | ||
| Aerobic regulation of cytochrome d oxidase (cydAB) operon expression in Escherichia coli: roles of Fnr and ArcA in repression and activation | Q44268961 | ||
| GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12. | Q44563370 | ||
| Expression of ptsG encoding the major glucose transporter is regulated by ArcA in Escherichia coli | Q44976896 | ||
| Effect of oxygen on the Escherichia coli ArcA and FNR regulation systems and metabolic responses | Q45237299 | ||
| Role of multiple ArcA recognition sites in anaerobic regulation of succinate dehydrogenase (sdhCDAB) gene expression in Escherichia coli | Q46179081 | ||
| Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA. | Q46963426 | ||
| Catabolism of phenylacetic acid in Escherichia coli. Characterization of a new aerobic hybrid pathway | Q48020686 | ||
| Information content of individual genetic sequences. | Q49947049 | ||
| Thioredoxin 2 is involved in the oxidative stress response in Escherichia coli. | Q52537783 | ||
| The arc two-component signal transduction system inhibits in vitro Escherichia coli chromosomal initiation. | Q53898983 | ||
| Purification and phosphorylation of the Arc regulatory components of Escherichia coli | Q36120181 | ||
| Integration host factor is required for anaerobic pyruvate induction of pfl operon expression in Escherichia coli | Q36122050 | ||
| Suppressor mutations in rpoA suggest that OmpR controls transcription by direct interaction with the alpha subunit of RNA polymerase | Q36241595 | ||
| ChIP-seq and transcriptome analysis of the OmpR regulon of Salmonella enterica serovars Typhi and Typhimurium reveals accessory genes implicated in host colonization. | Q36651833 | ||
| Organization and evolution of the biological response to singlet oxygen stress | Q36964081 | ||
| Redox regulation of cell survival | Q37181226 | ||
| Identification of a quinone-sensitive redox switch in the ArcB sensor kinase. | Q37513333 | ||
| Biological insights from structures of two-component proteins | Q37539921 | ||
| The key role of the redox status in regulation of metabolism in photosynthesizing organisms. | Q37766104 | ||
| Lipoic acid: energy metabolism and redox regulation of transcription and cell signaling | Q37836402 | ||
| OmpR mutants specifically defective for transcriptional activation | Q38302661 | ||
| Interplay between three global regulatory proteins mediates oxygen regulation of the Escherichia coli cytochrome d oxidase (cydAB) operon. | Q38305660 | ||
| Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome | Q38314358 | ||
| Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA. | Q38330855 | ||
| Mapping E. coli RNA polymerase and associated transcription factors and identifying promoters genome-wide | Q38334982 | ||
| Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling. | Q38346192 | ||
| Influence of transport energization on the growth yield of Escherichia coli. | Q38352081 | ||
| Sequence-specific binding to a subset of IscR-regulated promoters does not require IscR Fe-S cluster ligation | Q38355137 | ||
| The histone-like protein H-NS acts as a transcriptional repressor for expression of the anaerobic and growth phase activator AppY of Escherichia coli | Q38357285 | ||
| Inactivation and regulation of the aerobic C(4)-dicarboxylate transport (dctA) gene of Escherichia coli | Q39497403 | ||
| Dual transcriptional regulation of the Escherichia coli phosphate-starvation-inducible psiE gene of the phosphate regulon by PhoB and the cyclic AMP (cAMP)-cAMP receptor protein complex | Q39585868 | ||
| Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system | Q39679110 | ||
| Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions | Q39702617 | ||
| A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coli | Q39705576 | ||
| Role of NAD in regulating the adhE gene of Escherichia coli | Q39843125 | ||
| Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli | Q39885210 | ||
| Role of the transcriptional activator AppY in regulation of the cyx appA operon of Escherichia coli by anaerobiosis, phosphate starvation, and growth phase | Q39897823 | ||
| Dual regulation of the ugp operon by phosphate and carbon starvation at two interspaced promoters | Q39938370 | ||
| A novel sensor of NADH/NAD+ redox poise in Streptomyces coelicolor A3(2) | Q39958730 | ||
| Metabolic and transcriptional response to cofactor perturbations in Escherichia coli. | Q40813422 | ||
| Bacterial defense against aging: role of the Escherichia coli ArcA regulator in gene expression, readjusted energy flux and survival during stasis | Q41074950 | ||
| Manipulation of the anoxic metabolism in Escherichia coli by ArcB deletion variants in the ArcBA two-component system | Q41634337 | ||
| Purification of ArcA and analysis of its specific interaction with the pfl promoter-regulatory region | Q41669182 | ||
| ArcA and AppY antagonize IscR repression of hydrogenase-1 expression under anaerobic conditions, revealing a novel mode of O2 regulation of gene expression in Escherichia coli | Q41783641 | ||
| Transcript profiling and inference of Escherichia coli K-12 ArcA activity across the range of physiologically relevant oxygen concentrations | Q41826751 | ||
| The ArcBA two-component system of Escherichia coli is regulated by the redox state of both the ubiquinone and the menaquinone pool | Q42096565 | ||
| Systems analysis of transcription factor activities in environments with stable and dynamic oxygen concentrations | Q42260373 | ||
| A high-throughput percentage-of-binding strategy to measure binding energies in DNA-protein interactions: application to genome-scale site discovery | Q42425362 | ||
| Nucleotide sequence of putC, the regulatory region for the put regulon of Escherichia coli K12. | Q42657205 | ||
| Products of the Escherichia coli acid fitness island attenuate metabolite stress at extremely low pH and mediate a cell density-dependent acid resistance | Q42845453 | ||
| A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis | Q43207004 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 10 | |
| P304 | page(s) | e1003839 | |
| P577 | publication date | 2013-10-17 | |
| P1433 | published in | PLOS Genetics | Q1893441 |
| P1476 | title | The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally | |
| P478 | volume | 9 |
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