Variance stabilization applied to microarray data calibration and to the quantification of differential expression (scientific article (publication date: 2002))

cites work (P2860)

Q36897287	"Hook"-calibration of GeneChip-microarrays: theory and algorithm
Q34531044	17β-estradiol upregulates GREB1 and accelerates ovarian tumor progression in vivo
Q33388547	A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips
Q49400359	A Bootstrap Based Measure Robust to the Choice of Normalization Methods for Detecting Rhythmic Features in High Dimensional Data
Q87258633	A PGC-1α- and muscle fibre type-related decrease in markers of mitochondrial oxidative metabolism in skeletal muscle of humans with inherited insulin resistance
Q36133960	A Pneumococcal Protein Array as a Platform to Discover Serodiagnostic Antigens Against Infection.
Q33370396	A Population Proportion approach for ranking differentially expressed genes
Q55645740	A Requirement for Zic2 in the Regulation of Nodal Expression Underlies the Establishment of Left-Sided Identity.
Q31126999	A Synthetic Kinome Microarray Data Generator
Q33292708	A cDNA microarray for Crassostrea virginica and C. gigas.
Q42675375	A chemical-genetic interaction map of small molecules using high-throughput imaging in cancer cells.
Q31116984	A common reference for cDNA microarray hybridizations
Q38908255	A comparative analytical assay of gene regulatory networks inferred using microarray and RNA-seq datasets
Q34667581	A comparison of background correction methods for two-colour microarrays
Q31119163	A comparison of parametric and nonparametric methods for normalising cDNA microarray data
Q33409141	A comparison on effects of normalisations in the detection of differentially expressed genes
Q34434721	A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Q38748537	A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation
Q34634867	A comprehensive proteomic view of responses of A549 type II alveolar epithelial cells to human respiratory syncytial virus infection
Q44115936	A cut-off based approach for gene expression analysis of formalin-fixed and paraffin-embedded tissue samples
Q21267224	A deep investigation into the adipogenesis mechanism: profile of microRNAs regulating adipogenesis by modulating the canonical Wnt/beta-catenin signaling pathway
Q30586170	A foundation for reliable spatial proteomics data analysis.
Q42776628	A full Bayesian hierarchical mixture model for the variance of gene differential expression
Q34173441	A gene selection method for GeneChip array data with small sample sizes
Q42039947	A genome-wide RNA interference screen identifies caspase 4 as a factor required for tumor necrosis factor alpha signaling.
Q33556318	A hidden Markov support vector machine framework incorporating profile geometry learning for identifying microbial RNA in tiling array data
Q30014822	A high-resolution map of transcription in the yeast genome
Q24631007	A hippocampal insulin-growth factor 2 pathway regulates the extinction of fear memories
Q34344970	A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions
Q34466080	A map of directional genetic interactions in a metazoan cell
Q35832648	A measure of the impact of CV incompleteness on prediction error estimation with application to PCA and normalization.
Q34721103	A microarray-based gene expression analysis to identify diagnostic biomarkers for unknown primary cancer
Q30809573	A mixture model approach to detecting differentially expressed genes with microarray data
Q25257181	A multivariate prediction model for microarray cross-hybridization
Q31036367	A new "Logicle" display method avoids deceptive effects of logarithmic scaling for low signals and compensated data
Q38480235	A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway
Q38323565	A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells
Q39485541	A novel human high-risk ependymoma stem cell model reveals the differentiation-inducing potential of the histone deacetylase inhibitor Vorinostat
Q41931798	A novel role for Lef-1, a central transcription mediator of Wnt signaling, in leukemogenesis
Q37290007	A p53-like transcription factor similar to Ndt80 controls the response to nutrient stress in the filamentous fungus, Aspergillus nidulans
Q28569474	A physiogenomic approach to study the regulation of blood pressure
Q33682929	A review of statistical methods for preprocessing oligonucleotide microarrays.
Q42818732	A role for thioredoxin-interacting protein (Txnip) in cellular creatine homeostasis
Q35641733	A stationary wavelet entropy-based clustering approach accurately predicts gene expression
Q24651897	A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classification study
Q34236156	A systematic approach for analysis of peptide array kinome data
Q39330843	A systematic evaluation of normalization methods in quantitative label-free proteomics
Q24811424	A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription
Q36338404	A systems biology approach for diagnostic and vaccine antigen discovery in tropical infectious diseases
Q21283747	A transcriptome analysis identifies molecular effectors of unconjugated bilirubin in human neuroblastoma SH-SY5Y cells
Q45963782	A transcriptomic analysis of land-use impacts on the oyster, Crassostrea virginica, in the South Atlantic bight.
Q31034018	A two-sample Bayesian t-test for microarray data
Q33789317	A type I interferon transcriptional signature precedes autoimmunity in children genetically at risk for type 1 diabetes.
Q34239154	A unique H3K4me2 profile marks tissue-specific gene regulation
Q33242474	A universal reference sample derived from clone vector for improved detection of differential gene expression
Q39914535	AP-1-controlled hepatocyte growth factor activation promotes keratinocyte migration via CEACAM1 and urokinase plasminogen activator/urokinase plasminogen receptor
Q37536706	Aberrant methylation-mediated silencing of microRNAs contributes to HPV-induced anchorage independence.
Q34271693	Absolute quantification of somatic DNA alterations in human cancer
Q30998986	Accounting for probe-level noise in principal component analysis of microarray data
Q59289922	Accurate Detection of Differential Expression and Splicing Using Low-Level Features
Q36843220	Accurate molecular characterization of formalin-fixed, paraffin-embedded tissues by microRNA expression profiling
Q36059691	Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species.
Q30747017	Adaption of the global test idea to proteomics data with missing values
Q42427843	Addressing accuracy and precision issues in iTRAQ quantitation
Q30904612	Advanced significance analysis of microarray data based on weighted resampling: a comparative study and application to gene deletions in Mycobacterium bovis
Q43268944	Agrobacterium tumefaciens promotes tumor induction by modulating pathogen defense in Arabidopsis thaliana
Q28536909	Alcohol-induced histone acetylation reveals a gene network involved in alcohol tolerance
Q34062101	Allele-specific FKBP5 DNA demethylation mediates gene-childhood trauma interactions
Q39072564	Altered expression of miR-24, miR-126 and miR-365 does not affect viability of childhood TCF3-rearranged leukemia cells
Q40150974	Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa
Q24803085	Alternative mapping of probes to genes for Affymetrix chips
Q34197535	An 86-probe-set gene-expression signature predicts survival in cytogenetically normal acute myeloid leukemia
Q38607678	An Improved Analysis Methodology for Translational Profiling by Microarray.
Q31110497	An adaptation of the LMS method to determine expression variations in profiling data
Q48386161	An error model for protein quantification
Q34140843	An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies
Q30657263	An integrated hierarchical Bayesian approach to normalizing left-censored microRNA microarray data
Q51999161	An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach.
Q31146211	Analysis and management of microarray gene expression data.
Q33855914	Analysis of Gene Expression Profile of AGS Cells Stimulated by Helicobacter pylori Adhesion
Q36642965	Analysis of a novel highly metastatic melanoma cell line identifies osteopontin as a new lymphangiogenic factor
Q54615778	Analysis of pigmented villonodular synovitis with genome-wide complementary DNA microarray and tissue array technology reveals insight into potential novel therapeutic approaches.
Q35166603	Analysis of the effects of five factors relevant to in vitro chondrogenesis of human mesenchymal stem cells using factorial design and high throughput mRNA-profiling
Q36580853	Analyzing micro-RNA expression using microarrays
Q30881250	Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle
Q48395885	Annotation-based distance measures for patient subgroup discovery in clinical microarray studies
Q41892380	Apelin: A putative novel predictive biomarker for bevacizumab response in colorectal cancer.
Q91562113	Applying metabolomics to detect growth hormone administration in athletes: proof of concept
Q34041942	Array CGH phylogeny: how accurate are comparative genomic hybridization-based trees?
Q33636115	Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties
Q38358691	Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape
Q30939950	ArrayPipe: a flexible processing pipeline for microarray data
Q42457411	Arx acts as a regional key selector gene in the ventral telencephalon mainly through its transcriptional repression activity
Q33891645	Assessing affymetrix GeneChip microarray quality
Q34440417	Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures
Q33745685	Assessment and optimisation of normalisation methods for dual-colour antibody microarrays
Q35179611	Assessment of a novel multi-array normalization method based on spike-in control probes suitable for microRNA datasets with global decreases in expression
Q41047459	Assessment of toxicity and genotoxicity of low doses of 5-fluorouracil in zebrafish (Danio rerio) two-generation study
Q42315685	Astrocytic Calcium Waves Signal Brain Injury to Neural Stem and Progenitor Cells.
Q61444734	Attenuation of murine sclerodermatous models by the selective S1P receptor modulator cenerimod
Q34996503	Autoantibodies against the exocrine pancreas in autoimmune pancreatitis: gene and protein expression profiling and immunoassays identify pancreatic enzymes as a major target of the inflammatory process.
Q55001559	Autoimmune-Mediated Thymic Atrophy Is Accelerated but Reversible in RelB-Deficient Mice.
Q30659600	Autophagic digestion of Leishmania major by host macrophages is associated with differential expression of BNIP3, CTSE, and the miRNAs miR-101c, miR-129, and miR-210.
Q37466223	Autosomal genetic control of human gene expression does not differ across the sexes
Q41330752	Averaging auditory evoked magnetoencephalographic and electroencephalographic responses: a critical discussion.
Q41864083	Background adjustment for DNA microarrays using a database of microarray experiments.
Q33516022	Background correction of two-colour cDNA microarray data using spatial smoothing methods
Q53240350	Basonuclin-1 modulates epithelial plasticity and TGF-β1-induced loss of epithelial cell integrity.
Q36817641	Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS.
Q36218076	Bayesian assignment of gene ontology terms to gene expression experiments
Q37700972	Bayesian inference for skew-normal mixture models with left-censoring
Q38518803	Bayesian modeling of differential gene expression
Q51992646	Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network.
Q36268721	Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri
Q30759823	BiNA: a visual analytics tool for biological network data
Q40999427	Bias in recent miRBase annotations potentially associated with RNA quality issues.
Q41693673	Bioenergetic state regulates innate inflammatory responses through the transcriptional co-repressor CtBP
Q30498407	Biological assessment of robust noise models in microarray data analysis
Q33892195	Biomarkers allow detection of nutrient limitations and respective supplementation for elimination in Pichia pastoris fed-batch cultures.
Q46914397	Biostatistical analysis of gene microarrays reveals diverse expression clusters between macaque subspecies in brain SIV infection.
Q110949991	Blind normalization of public high-throughput databases
Q57767705	Bootstrap method for the estimation of measurement uncertainty in spotted dual-color DNA microarrays
Q33931897	C4BPB/C4BPA is a new susceptibility locus for venous thrombosis with unknown protein S-independent mechanism: results from genome-wide association and gene expression analyses followed by case-control studies
Q24816047	CAGER: classification analysis of gene expression regulation using multiple information sources
Q30477210	CARMA: A platform for analyzing microarray datasets that incorporate replicate measures
Q31048899	CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis
Q34605938	CD161 defines a transcriptional and functional phenotype across distinct human T cell lineages.
Q40026531	CD30-induced signaling is absent in Hodgkin's cells but present in anaplastic large cell lymphoma cells
Q42266393	CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor
Q33290220	CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex
Q36657755	CYP3A5 mediates basal and acquired therapy resistance in different subtypes of pancreatic ductal adenocarcinoma
Q24791137	Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
Q33323244	Can subtle changes in gene expression be consistently detected with different microarray platforms?
Q40196318	Candidate miRNAs and pathogenesis investigation for hepatocellular carcinoma based on bioinformatics analysis
Q39756394	Capturing drug responses by quantitative promoter activity profiling
Q28596902	Cardiovascular genomics: a biomarker identification pipeline
Q51450898	Caspase-3 feeds back on caspase-8, Bid and XIAP in type I Fas signaling in primary mouse hepatocytes.
Q28547556	Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFκB Signaling in Hepatocellular Carcinoma
Q38514237	Cell cycle and immune-related processes are significantly altered in chronic GVHD.
Q37141177	Cellular stress conditions are reflected in the protein and RNA content of endothelial cell-derived exosomes
Q33287798	Celsius: a community resource for Affymetrix microarray data
Q30684846	Challenges for MicroRNA Microarray Data Analysis
Q37225647	Challenges in detecting pre-malignant pancreatic lesions during acute pancreatitis using a serum microRNA assay: a study based on KrasG12D transgenic mice
Q34805391	Challenges in interpreting allergen microarrays in relation to clinical symptoms: a machine learning approach
Q33528144	Changes in gene expression linked with adult reproductive diapause in a northern malt fly species: a candidate gene microarray study.
Q48069881	Chaperoning epigenetics: FKBP51 decreases the activity of DNMT1 and mediates epigenetic effects of the antidepressant paroxetine
Q37199562	Characterisation of the global transcriptional response to heat shock and the impact of individual genetic variation
Q40485289	Characterization and genetic manipulation of primed stem cells into a functional naïve state with ESRRB.
Q35051846	Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.
Q36278728	Characterization and quantification of proteins secreted by single human embryos prior to implantation
Q35634683	Characterization of bipolar disorder patient-specific induced pluripotent stem cells from a family reveals neurodevelopmental and mRNA expression abnormalities
Q33391778	Characterization of the placental macrophage secretome: implications for antiviral activity
Q41696223	Characterizing the genetic basis of innate immune response in TLR4-activated human monocytes
Q34341949	Childhood maltreatment is associated with distinct genomic and epigenetic profiles in posttraumatic stress disorder
Q24813745	Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization
Q21267172	Chipster: user-friendly analysis software for microarray and other high-throughput data
Q28756588	Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
Q41611140	Chromosome contacts in activated T cells identify autoimmune disease candidate genes
Q41781241	Ciprofloxacin induction of a susceptibility determinant in Pseudomonas aeruginosa
Q21134914	Circulating micro-RNAs as potential blood-based markers for early stage breast cancer detection
Q37377053	Cis-acting regulation of brain-specific ANK3 gene expression by a genetic variant associated with bipolar disorder.
Q59340306	Clinical performance of an analytically validated assay in comparison to microarray technology to assess PITX2 DNA-methylation in breast cancer
Q37673301	Clusterin is a gene-specific target of microRNA-21 in head and neck squamous cell carcinoma
Q42278421	Co-Inflammatory Roles of TGFβ1 in the Presence of TNFα Drive a Pro-inflammatory Fate in Mesenchymal Stem Cells
Q37140347	CoCAS: a ChIP-on-chip analysis suite
Q91774932	Combining Transcriptomics and Proteomics Reveals Potential Post-transcriptional Control of Gene Expression After Light Exposure in Metarhizium acridum
Q42830893	Common genetic variation drives molecular heterogeneity in human iPSCs
Q64971389	Comparative Expression Profiling of Wild Type Drosophila Malpighian Tubules and von Hippel-Lindau Haploinsufficient Mutant.
Q33406020	Comparative analysis of methods for gene transcription profiling data derived from different microarray technologies in rat and mouse models of diabetes
Q33305290	Comparative evaluation of gene-set analysis methods
Q29347275	Comparative expression profiling identifies differential roles for Myogenin and p38α MAPK signaling in myogenesis
Q42144596	Comparative transcription profiling and in-depth characterization of plasmid-based and plasmid-free Escherichia coli expression systems under production conditions
Q24801443	Comparing transformation methods for DNA microarray data
Q50733090	Comparison of Affymetrix GeneChip expression measures.
Q34272329	Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks.
Q33594867	Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3.
Q27316374	Comparison of pre-processing methods for multiplex bead-based immunoassays
Q33405437	Comparison of small n statistical tests of differential expression applied to microarrays
Q53667833	Comprehensive gene expression analysis of rice aleurone cells: probing the existence of an alternative gibberellin receptor.
Q33553004	Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
Q36429090	Comprehensive systems biology analysis of a 7-month cigarette smoke inhalation study in C57BL/6 mice
Q35668006	Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83.
Q33999125	Computation for ChIP-seq and RNA-seq studies
Q30950304	Computational strategies for analyzing data in gene expression microarray experiments
Q34324835	Computational synchronization of microarray data with application to Plasmodium falciparum
Q42036487	Conifer defence against insects: microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-
Q27305223	Connecting Anxiety and Genomic Copy Number Variation: A Genome-Wide Analysis in CD-1 Mice
Q37209981	Conservation of core gene expression in vertebrate tissues
Q35987220	Conservation of thiol-oxidative stress responses regulated by SigR orthologues in actinomycetes.
Q30500491	Constitutive heterochromatin reorganization during somatic cell reprogramming
Q36660770	Constraint and turnover in sex-biased gene expression in the genus Drosophila
Q39814270	Construction of biosensor systems for determining the pathophysiological potential of carrageenan variants
Q34013747	Coordinated regulation of ATF2 by miR-26b in γ-irradiated lung cancer cells
Q38515306	Coordinated regulation of maize genes during increasing exposure to ultraviolet radiation: identification of ultraviolet-responsive genes, functional processes and associated potential promoter motifs.
Q31021758	Copy number variants in candidate genes are genetic modifiers of Hirschsprung disease
Q28652392	Core and region-enriched networks of behaviorally regulated genes and the singing genome
Q41955639	Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood
Q38300509	Correcting for sequence biases in present/absent calls
Q30860022	Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis
Q24811346	Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes
Q34769120	Cross-species comparison of human and mouse intestinal polyps reveals conserved mechanisms in adenomatous polyposis coli (APC)-driven tumorigenesis
Q38921106	Curcumin inhibits proliferation-migration of NSCLC by steering crosstalk between a Wnt signaling pathway and an adherens junction via EGR-1.
Q33470216	Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays
Q59195996	Cutaneous Anaplastic Large Cell Lymphoma and Peripheral T-Cell Lymphoma NOS Show Distinct Chromosomal Alterations and Differential Expression of Chemokine Receptors and Apoptosis Regulators
Q34273183	Cyber-T web server: differential analysis of high-throughput data
Q47214464	Cytoskeletal proteins are coordinately increased in maize genotypes with high levels of eEF1A.
Q33727517	DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
Q35776219	DNA microarray integromics analysis platform
Q35901478	DNA microarray technology and its applications in dermatology
Q63885889	Darkened Leaves Use Different Metabolic Strategies for Senescence and Survival
Q57663144	Data Analysis Strategies in Medical Imaging
Q33714697	Data for iTRAQ-based quantification of the cardiac proteome of rainbow trout (Oncorhynchus mykiss) at rest and with exercise training
Q31053876	Data in support of proteomic analysis of pneumococcal pediatric clinical isolates to construct a protein array.
Q52370989	Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online.
Q31057691	Data storage and analysis in ArrayExpress
Q33372159	Data storage and analysis in ArrayExpress and Expression Profiler
Q38600105	Data-analysis strategies for image-based cell profiling.
Q41942305	De-regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus.
Q33569209	Deciphering the porcine intestinal microRNA transcriptome
Q28742928	Deep sequencing of MYC DNA-binding sites in Burkitt lymphoma
Q34104158	Defense mechanisms against herbivory in Picea: sequence evolution and expression regulation of gene family members in the phenylpropanoid pathway.
Q33546645	Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization
Q34132926	Delineation of two clinically and molecularly distinct subgroups of posterior fossa ependymoma
Q54940461	Deregulated microRNA and mRNA expression profiles in the peripheral blood of patients with Marfan syndrome.
Q51965238	Detecting common gene expression patterns in multiple cancer outcome entities.
Q34552832	Detection and comparison of microRNA expression in the serum of Doberman Pinschers with dilated cardiomyopathy and healthy controls
Q28304911	Detection of in vivo protein-DNA interactions using DamID in mammalian cells
Q35249717	Determination and inference of eukaryotic transcription factor sequence specificity
Q37379620	Development and evaluation of normalization methods for label-free relative quantification of endogenous peptides.
Q34414136	Development of a standardized approach for environmental microbiota investigations related to asthma development in children
Q30455078	Dexamethasone stimulated gene expression in peripheral blood is a sensitive marker for glucocorticoid receptor resistance in depressed patients
Q28730615	Diagnosis of pancreatic ductal adenocarcinoma and chronic pancreatitis by measurement of microRNA abundance in blood and tissue
Q34551127	Differences in transcription patterns between induced pluripotent stem cells produced from the same germ layer are erased upon differentiation.
Q47701588	Different molecular mechanisms underlie placental overgrowth phenotypes caused by interspecies hybridization, cloning, and Esx1 mutation
Q34020239	Differential Shannon entropy and differential coefficient of variation: alternatives and augmentations to differential expression in the search for disease-related genes
Q33998969	Differential effects of prenatal stress in 5-Htt deficient mice: towards molecular mechanisms of gene × environment interactions
Q24646189	Differential expression and prognostic significance of SOX genes in pediatric medulloblastoma and ependymoma identified by microarray analysis
Q33594473	Differential expression of apoptotic genes PDIA3 and MAP3K5 distinguishes between low- and high-risk prostate cancer
Q44729153	Differential expression of circulating microRNAs in diabetic and healthy lean cats
Q30423712	Differential expression of microRNAs in avian leukosis virus subgroup J-induced tumors
Q37315958	Differential expression of microRNAs in myometrium and leiomyomas and regulation by ovarian steroids
Q38467076	Differential gene expression in Aspergillus fumigatus induced by human platelets in vitro.
Q92347954	Differential network analysis and protein-protein interaction study reveals active protein modules in glucocorticoid resistance for infant acute lymphoblastic leukemia
Q42113114	Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli
Q35827698	Directed random walks and constraint programming reveal active pathways in hepatocyte growth factor signaling.
Q50740271	Dirigent proteins in conifer defense: gene discovery, phylogeny, and differential wound- and insect-induced expression of a family of DIR and DIR-like genes in spruce (Picea spp.).
Q34534225	Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms
Q57798892	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture
Q33842804	Discovery of novel Schistosoma japonicum antigens using a targeted protein microarray approach.
Q35868054	Discovery of potential diagnostic and vaccine antigens in herpes simplex virus 1 and 2 by proteome-wide antibody profiling
Q89576000	Discovery of the Consistently Well-Performed Analysis Chain for SWATH-MS Based Pharmacoproteomic Quantification
Q45240539	Distinct gene expression patterns associated with FLT3- and NRAS-activating mutations in acute myeloid leukemia with normal karyotype
Q33345472	Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis.
Q36959930	Distinct malaria parasite sporozoites reveal transcriptional changes that cause differential tissue infection competence in the mosquito vector and mammalian host
Q39125525	Distinct metabolic differences between various human cancer and primary cells
Q31119968	Distinct microRNA expression profile in prostate cancer patients with early clinical failure and the impact of let-7 as prognostic marker in high-risk prostate cancer
Q41771247	Distinct severe acute respiratory syndrome coronavirus-induced acute lung injury pathways in two different nonhuman primate species
Q37384952	Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas
Q39964196	Distribution of miRNA expression across human tissues
Q39403682	Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome
Q38489765	Divergent immune responses to Mycobacterium avium subsp. paratuberculosis infection correlate with kinome responses at the site of intestinal infection
Q36140594	Do count-based differential expression methods perform poorly when genes are expressed in only one condition?
Q45944473	Down-regulation of HLA Class I and NKG2D ligands through a concerted action of MAPK and DNA methyltransferases in colorectal cancer cells.
Q33361336	Drought Induces Distinct Growth Response, Protection, and Recovery Mechanisms in the Maize Leaf Growth Zone.
Q28276260	Dual targeting of p53 and c-MYC selectively eliminates leukaemic stem cells
Q36369084	Dynamics of microRNAs in bull spermatozoa
Q90096146	Dynamics of the human skin mediator lipidome in response to dietary ω-3 fatty acid supplementation
Q33737107	EMA - A R package for Easy Microarray data analysis
Q53062739	EMP1, a novel poor prognostic factor in pediatric leukemia regulates prednisolone resistance, cell proliferation, migration and adhesion.
Q37470660	EP2 receptor mediated cAMP release is augmented by PGF 2 alpha activation of the FP receptor via the calcium-calmodulin pathway.
Q51908573	EVE (external variance estimation) increases statistical power for detecting differentially expressed genes.
Q38345216	EVI1 overexpression in distinct subtypes of pediatric acute myeloid leukemia
Q24814200	EXPANDER--an integrative program suite for microarray data analysis
Q46821162	Early divergence of Th1 and Th2 transcriptomes involves a small core response and sets of transiently expressed genes
Q45767979	Early functional and transcriptomic changes in the myocardium predict outcome in a long-term rat model of sepsis.
Q42314837	Early metabolic and transcriptional variations in fruit of natural white-fruited Fragaria vesca genotypes
Q84394197	Early senescence and cell death in Arabidopsis saul1 mutants involves the PAD4-dependent salicylic acid pathway
Q34059380	Ebola virus modulates transforming growth factor β signaling and cellular markers of mesenchyme-like transition in hepatocytes
Q46141150	Effect of Guanxin No.2 decoction on gene expression in different areas of the myocardial infarcted heart of rats using microarray technology
Q61809852	Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation
Q96127067	Effect of congenital adrenal hyperplasia treated by glucocorticoids on plasma metabolome: a machine-learning-based analysis
Q31085877	Effect of various normalization methods on Applied Biosystems expression array system data
Q24791949	Effective transcriptome amplification for expression profiling on sense-oriented oligonucleotide microarrays
Q33377464	Effects of aneuploidy on genome structure, expression, and interphase organization in Arabidopsis thaliana
Q34934433	Effects of fertility on gene expression and function of the bovine endometrium
Q46373645	Effects of mycophenolic acid on human fibroblast proliferation, migration and adhesion in vitro and in vivo
Q40208549	Egr2 and 3 control adaptive immune responses by temporally uncoupling expansion from T cell differentiation
Q34072688	Elevated PIN1 expression by C/EBPalpha-p30 blocks C/EBPalpha-induced granulocytic differentiation through c-Jun in AML
Q54327060	Elevated S100A8/S100A9 expression causes glucocorticoid resistance in MLL-rearranged infant acute lymphoblastic leukemia.
Q33325698	Empirical Bayes models for multiple probe type microarrays at the probe level
Q52581785	Empirical evaluation of data normalization methods for molecular classification.
Q35468516	Enhancers regulate progression of development in mammalian cells
Q34298569	EnrichNet: network-based gene set enrichment analysis.
Q54559174	Ependymoma gene expression profiles associated with histological subtype, proliferation, and patient survival.
Q58831948	Escherichia coli W shows fast, highly oxidative sucrose metabolism and low acetate formation
Q53083008	Essential role of the plasmid hik31 operon in regulating central metabolism in the dark in Synechocystis sp. PCC 6803.
Q59791261	Establishment and characterization of a novel vincristine-resistant diffuse large B-cell lymphoma cell line containing the 8q24 homogeneously staining region
Q41907138	Estimating genome-wide copy number using allele-specific mixture models
Q31144403	Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data
Q24650764	Estimation and correction of non-specific binding in a large-scale spike-in experiment
Q47204469	Estimation on local transmission of malaria by serological approach under low transmission setting in Myanmar.
Q89529374	Estradiol-17β-Induced Changes in the Porcine Endometrial Transcriptome In Vivo
Q35190389	Evaluation of bias-variance trade-off for commonly used post-summarizing normalization procedures in large-scale gene expression studies
Q34542996	Evaluation of gene expression signatures predictive of cytogenetic and molecular subtypes of pediatric acute myeloid leukemia
Q25257085	Evaluation of methods for oligonucleotide array data via quantitative real-time PCR
Q33450671	Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples
Q34244842	Evaluation of normalization methods in mammalian microRNA-Seq data
Q42282257	Evaluation of one- and two-color gene expression arrays for microbial comparative genome hybridization analyses in routine applications
Q90097454	Evaluation of statistical techniques to normalize mass spectrometry-based urinary metabolomics data
Q47953861	Evaluation of the Tobacco Heating System 2.2. Part 7: Systems toxicological assessment of a mentholated version revealed reduced cellular and molecular exposure effects compared with mentholated and non-mentholated cigarette smoke
Q48449609	Evidence for mitochondrial genetic control of autosomal gene expression
Q33980036	Evidence for the complexity of microRNA-mediated regulation in ovarian cancer: a systems approach.
Q28741397	Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli
Q36969577	Evolution of primate gene expression: drift and corrective sweeps?
Q27315954	Exacerbated innate host response to SARS-CoV in aged non-human primates
Q100421532	Expanding the efflux in vitro assay toolbox: A CRISPR-Cas9 edited MDCK cell line with human BCRP and completely lacking canine MDR1
Q34020695	Expectations, validity, and reality in gene expression profiling
Q34662492	Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments.
Q24791182	Exploratory differential gene expression analysis in microarray experiments with no or limited replication
Q92370984	Exposure-induced changes of plasma metabolome and gene expression in patients with panic disorder
Q29302290	Expression Analysis of All Protease Genes Reveals Cathepsin K to Be Overexpressed in Glioblastoma
Q33425018	Expression profile and transcription factor binding site exploration of imprinted genes in human and mouse
Q36219899	Extensive Regulation of Diurnal Transcription and Metabolism by Glucocorticoids
Q38890067	FKBP51 inhibits GSK3β and augments the effects of distinct psychotropic medications
Q33524786	FRT-seq: amplification-free, strand-specific transcriptome sequencing
Q35805278	Failure of the smallpox vaccine to develop a skin lesion in vaccinia virus-naïve individuals is related to differences in antibody profiles before vaccination, not after
Q41982136	Feature selection for predicting tumor metastases in microarray experiments using paired design.
Q33473035	Filtering genes for cluster and network analysis
Q33366824	Finding differentially expressed genes in two-channel DNA microarray datasets: how to increase reliability of data preprocessing
Q41576345	Fingolimod induces neuroprotective factors in human astrocytes
Q48422495	Flexible empirical Bayes models for differential gene expression
Q36778625	Flow Cytometric Analysis of Mononuclear Phagocytes in Nondiseased Human Lung and Lung-Draining Lymph Nodes
Q28544519	Foxf genes integrate tbx5 and hedgehog pathways in the second heart field for cardiac septation
Q21144946	Foxp2 regulates gene networks implicated in neurite outgrowth in the developing brain
Q54652581	From 'omes to biology.
Q24560001	From ORFeome to biology: a functional genomics pipeline
Q28768959	From microarray data to results. Workshop on genomic approaches to microarray data analysis.
Q33983077	Functional characterization of MAT1-1-specific mating-type genes in the homothallic ascomycete Sordaria macrospora provides new insights into essential and nonessential sexual regulators.
Q39540562	Functional evidence that Drosha overexpression in cervical squamous cell carcinoma affects cell phenotype and microRNA profiles
Q34275656	Functional interactions between the LRP6 WNT co-receptor and folate supplementation
Q30884917	Functional normalization of 450k methylation array data improves replication in large cancer studies.
Q34664043	Functional profiling of precursor MicroRNAs identifies MicroRNAs essential for glioma proliferation
Q33566263	G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration
Q30479064	GATA factors in human neuroblastoma: distinctive expression patterns in clinical subtypes
Q33350950	GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis
Q33532968	GOing Bayesian: model-based gene set analysis of genome-scale data
Q89695694	GPCR-induced YAP activation sensitizes fibroblasts to profibrotic activity of TGFβ1
Q30763416	Gaussian process regression model for normalization of LC-MS data using scan-level information
Q42129591	Gene Expression Patterns in Ependymomas Correlate with Tumor Location, Grade, and Patient Age
Q47230657	Gene expression analysis in peripheral blood cells of patients with hereditary leiomyomatosis and renal cell cancer syndrome (HLRCC): identification of NRF2 pathway activation.
Q51887994	Gene expression analysis via multidimensional scaling.
Q47259842	Gene expression changes in the course of neural progenitor cell differentiation.
Q33538271	Gene expression data analysis using closed item set mining for labeled data
Q33654276	Gene expression in chicken reveals correlation with structural genomic features and conserved patterns of transcription in the terrestrial vertebrates
Q58183271	Gene expression in early stage cervical cancer
Q34351982	Gene expression in the skin of dogs sensitized to the house dust mite Dermatophagoides farinae
Q51924135	Gene expression network analysis and applications to immunology.
Q57753130	Gene expression of AGS cells stimulated with released proteins by Helicobacter pylori
Q33781047	Gene expression of axon growth promoting factors in the deer antler
Q75436814	Gene expression patterns in acute myeloid leukemia correlate with centrosome aberrations and numerical chromosome changes
Q35302035	Gene expression profiles associated with pediatric relapsed AML.
Q33290349	Gene expression profiling and gene copy-number changes in malignant mesothelioma cell lines.
Q27931265	Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism
Q30851418	Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers
Q53347361	Gene expression profiling of CD34+ cells identifies a molecular signature of chronic myeloid leukemia blast crisis.
Q35381299	Gene expression profiling of CD8+ T cells predicts prognosis in patients with Crohn disease and ulcerative colitis
Q45201448	Gene expression profiling of Philadelphia chromosome (Ph)-negative CD34+ hematopoietic stem and progenitor cells of patients with Ph-positive CML in major molecular remission during therapy with imatinib
Q41779182	Gene expression profiling of connective tissue growth factor (CTGF) stimulated primary human tenon fibroblasts reveals an inflammatory and wound healing response in vitro.
Q33736475	Gene expression profiling of human breast tissue samples using SAGE-Seq
Q51560652	Gene expression profiling of human gastrointestinal stromal tumors according to its malignant potential.
Q40185193	Gene expression profiling of liver cells after copper overload in vivo and in vitro reveals new copper-regulated genes
Q35058483	Gene expression signature of normal cell-of-origin predicts ovarian tumor outcomes
Q40321847	Gene expression signature of primary imatinib-resistant chronic myeloid leukemia patients
Q54162323	Gene expression signatures associated with the resistance to imatinib.
Q33302052	Gene expression trees in lymphoid development
Q24806230	Gene expression variation between mouse inbred strains
Q41976129	Gene network dynamics controlling keratinocyte migration
Q37697006	Gene signature of the metastatic potential of cutaneous melanoma: too much for too little?
Q33347527	Gene-expression profiling of grape bud response to two alternative dormancy-release stimuli expose possible links between impaired mitochondrial activity, hypoxia, ethylene-ABA interplay and cell enlargement
Q35061899	Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution
Q34257891	Generalized unmixing model for multispectral flow cytometry utilizing nonsquare compensation matrices
Q36207440	Genetical genomics identifies the genetic architecture for growth and weevil resistance in spruce
Q28752094	Genetics and beyond--the transcriptome of human monocytes and disease susceptibility
Q31114440	Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context
Q35620670	Genome-Wide Association Analyses Point to Candidate Genes for Electric Shock Avoidance in Drosophila melanogaster
Q34789412	Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding.
Q38344633	Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.
Q42225375	Genome-wide allele- and strand-specific expression profiling
Q34247597	Genome-wide analysis of mRNA decay patterns during early Drosophila development
Q41786778	Genome-wide methylation analyses of primary human leukocyte subsets identifies functionally important cell-type-specific hypomethylated regions.
Q35557763	Genome-wide survey of post-meiotic segregation during yeast recombination
Q34238606	Genome-wide transcription analysis of clinal genetic variation in Drosophila
Q38631085	Genomewide DNA methylation analysis in combat veterans reveals a novel locus for PTSD.
Q37170500	Genomic analysis of COP9 signalosome function in Drosophila melanogaster reveals a role in temporal regulation of gene expression
Q35906075	Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.
Q24812734	Genomic analysis of heat-shock factor targets in Drosophila
Q51887932	Genomic analysis reveals poor separation of human cardiomyopathies of ischemic and nonischemic etiologies.
Q34785899	Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum
Q33327381	Genomic diversity among Beijing and non-Beijing Mycobacterium tuberculosis isolates from Myanmar
Q36643191	Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila
Q33742354	Genomic profiling of microRNAs and messenger RNAs reveals hormonal regulation in microRNA expression in human endometrium
Q48526067	Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription
Q33240458	Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of [...]
Q54588173	Global analysis of gene expression during development and ripening of citrus fruit flesh. A proposed mechanism for citric Acid utilization.
Q107213705	Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection
Q42005623	Global gene expression changes of in vitro stimulated human transformed germinal centre B cells as surrogate for oncogenic pathway activation in individual aggressive B cell lymphomas
Q38521995	Global gene expression in human myocardium-oligonucleotide microarray analysis of regional diversity and transcriptional regulation in heart failure.
Q80265745	Global gene expression profiling of formalin-fixed paraffin-embedded tumor samples: a comparison to snap-frozen material using oligonucleotide microarrays
Q47895446	Global mapping of the regulatory interactions of histone residues
Q53333979	Global microRNA profiles in cervical squamous cell carcinoma depend on Drosha expression levels.
Q51112512	Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis).
Q35811477	Global transcriptome analysis of constitutive resistance to the white pine weevil in spruce
Q33639046	Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment
Q38354523	Global upregulation of gene expression associated with renal dysfunction in DOCA-salt-induced hypertensive rats occurs via signaling cascades involving epidermal growth factor receptor: a microarray analysis.
Q24805173	Graphical technique for identifying a monotonic variance stabilizing transformation for absolute gene intensity signals
Q48435804	Group testing for pathway analysis improves comparability of different microarray datasets
Q93039496	Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention
Q35422275	H3K4 tri-methylation provides an epigenetic signature of active enhancers
Q36544516	HDAC inhibitor AR-42 decreases CD44 expression and sensitizes myeloma cells to lenalidomide
Q53666804	HIF-2alpha-dependent PAI-1 induction contributes to angiogenesis in hepatocellular carcinoma.
Q33760802	HapX positively and negatively regulates the transcriptional response to iron deprivation in Cryptococcus neoformans
Q93223313	Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition
Q58492940	High BRE expression in pediatric MLL-rearranged AML is associated with favorable outcome
Q41563852	High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues
Q39023264	High-Dimensional Profiling for Computational Diagnosis
Q41951177	High-resolution mapping of heterochromatin redistribution in a Drosophila position-effect variegation model
Q27938210	High-resolution mapping of meiotic crossovers and non-crossovers in yeast
Q42759088	High-resolution spatial normalization for microarrays containing embedded technical replicates
Q33724806	High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis
Q33713954	High-throughput prediction of protein antigenicity using protein microarray data
Q34037232	High-throughput profiling of the humoral immune responses against thirteen human papillomavirus types by proteome microarrays.
Q35024073	High-throughput screens identify microRNAs essential for HER2 positive breast cancer cell growth
Q93080268	Homozygous Mutations in CSF1R Cause a Pediatric-Onset Leukoencephalopathy and Can Result in Congenital Absence of Microglia
Q33290980	HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments.
Q51609331	How do insects react to novel inherited symbionts? A microarray analysis of Drosophila melanogaster response to the presence of natural and introduced Spiroplasma.
Q52708434	How the insect immune system interacts with an obligate symbiotic bacterium.
Q64917080	Human CD30+ B cells represent a unique subset related to Hodgkin lymphoma cells.
Q38308578	Human heterochromatin proteins form large domains containing KRAB-ZNF genes
Q34153204	Human tumor microRNA signatures derived from large-scale oligonucleotide microarray datasets
Q90400053	Hypoxia-Induced Adaptations of miRNomes and Proteomes in Melanoma Cells and Their Secreted Extracellular Vesicles
Q42199311	IL-4 orchestrates STAT6-mediated DNA demethylation leading to dendritic cell differentiation
Q40544239	IL-6 protects pancreatic islet beta cells from pro-inflammatory cytokines-induced cell death and functional impairment in vitro and in vivo
Q47116903	IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA-target interactions
Q51063740	IQuant: an automated pipeline for quantitative proteomics based upon isobaric tags.
Q90433084	Identification of Deregulated Pathways, Key Regulators, and Novel miRNA-mRNA Interactions in HPV-Mediated Transformation
Q34484641	Identification of Immunodominant Antigens by Probing a WholeChlamydia trachomatisOpen Reading Frame Proteome Microarray Using Sera from Immunized Mice
Q40386669	Identification of MMP-15 as an anti-apoptotic factor in cancer cells
Q35552076	Identification of a microRNA signature associated with risk of distant metastasis in nasopharyngeal carcinoma
Q33805258	Identification of candidate long non-coding RNAs in response to myocardial infarction
Q99596492	Identification of common differentially expressed genes in Turner (45,X) and Klinefelter (47,XXY) syndromes using bioinformatics analysis
Q36919978	Identification of diagnostic biomarkers for infection in premature neonates
Q33208600	Identification of hair cycle-associated genes from time-course gene expression profile data by using replicate variance
Q30000633	Identification of immunity-related genes in Arabidopsis and cassava using genomic data
Q34623193	Identification of immunodominant antigens of Chlamydia trachomatis using proteome microarrays
Q31142190	Identification of key miRNAs in pancreatitis using bioinformatics analysis of microarray data
Q33356682	Identification of low intratumoral gene expression heterogeneity in neuroblastic tumors by genome-wide expression analysis and game theory
Q35244936	Identification of microRNAs and their targets in tomato infected with Cucumber mosaic virus based on deep sequencing
Q34281856	Identification of microRNAs inhibiting TGF-β-induced IL-11 production in bone metastatic breast cancer cells
Q53631412	Identification of novel oligodendroglioma-associated candidate tumor suppressor genes in 1p36 and 19q13 using microarray-based expression profiling.
Q33426080	Identification of novel transcriptional regulators involved in macrophage differentiation and activation in U937 cells
Q40358294	Identification of novel tumour-associated genes differentially expressed in the process of squamous cell cancer development
Q35098549	Identification of potential serodiagnostic and subunit vaccine antigens by antibody profiling of toxoplasmosis cases in Turkey
Q30697080	Identification of significant features in DNA microarray data
Q35598289	Identification of tissue cyst wall components by transcriptome analysis of in vivo and in vitro Toxoplasma gondii bradyzoites
Q63433250	Identifying Extrinsic versus Intrinsic Drivers of Variation in Cell Behavior in Human iPSC Lines from Healthy Donors
Q42615895	Identifying differentially expressed proteins in two-dimensional electrophoresis experiments: inputs from transcriptomics statistical tools.
Q33570986	Identifying essential genes in bacterial metabolic networks with machine learning methods
Q34536871	Identifying targets of the Sox domain protein Dichaete in the Drosophila CNS via targeted expression of dominant negative proteins
Q40261414	Immune profiling with a Salmonella Typhi antigen microarray identifies new diagnostic biomarkers of human typhoid
Q35868029	Immunodominant "asymptomatic" herpes simplex virus 1 and 2 protein antigens identified by probing whole-ORFome microarrays with serum antibodies from seropositive asymptomatic versus symptomatic individuals
Q37219725	Immunophenotype Discovery, Hierarchical Organization, and Template-Based Classification of Flow Cytometry Samples.
Q34394546	Immunoproteomic analysis of antibody in lymphocyte supernatant in patients with typhoid fever in Bangladesh
Q43161221	Impact of normalization on miRNA microarray expression profiling
Q34057623	Impact of the spotted microarray preprocessing method on fold-change compression and variance stability
Q33586950	Importance of replication in analyzing time-series gene expression data: corticosteroid dynamics and circadian patterns in rat liver
Q33210323	Improved parameter estimation for variance-stabilizing transformation of gene-expression microarray data
Q24815238	Improved statistical analysis of budding yeast TAG microarrays revealed by defined spike-in pools
Q33490282	Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology
Q35216502	In Silico cancer cell versus stroma cellularity index computed from species-specific human and mouse transcriptome of xenograft models: towards accurate stroma targeting therapy assessment.
Q24811429	In silico microdissection of microarray data from heterogeneous cell populations
Q36822675	In vivo NCL targeting affects breast cancer aggressiveness through miRNA regulation
Q35722244	In-depth identification of pathways related to cisplatin-induced hepatotoxicity through an integrative method based on an informatics-assisted label-free protein quantitation and microarray gene expression approach
Q39517584	In-silico-driven metabolic engineering of Pseudomonas putida for enhanced production of poly-hydroxyalkanoates
Q28552259	Increased Skin Tumor Incidence and Keratinocyte Hyper-Proliferation in a Mouse Model of Down Syndrome
Q61829305	Increased expression of c-Jun in nonalcoholic fatty liver disease
Q57461143	Infant Viral Respiratory Infection Nasal Immune-Response Patterns and Their Association with Subsequent Childhood Recurrent Wheeze
Q34700309	Infection of human coronary artery endothelial cells by group B streptococcus contributes to dysregulation of apoptosis, hemostasis, and innate immune responses
Q42362847	Infection with Burkholderia pseudomallei - immune correlates of survival in acute melioidosis
Q36547745	Infection with street strain rabies virus induces modulation of the microRNA profile of the mouse brain
Q42646014	Inferring differentiation pathways from gene expression
Q42638970	Inflammatory cytokines and signaling pathways are associated with survival of primary chronic lymphocytic leukemia cells in vitro: a dominant role of CCL2.
Q28741463	Influence of 17β-estradiol on gene expression of Paracoccidioides during mycelia-to-yeast transition
Q39400767	Inhibition of miR-9 de-represses HuR and DICER1 and impairs Hodgkin lymphoma tumour outgrowth in vivo
Q53806651	Inhibition of the kinase ITK in a mouse model of asthma reduces cell death and fails to inhibit the inflammatory response.
Q35171067	Initiation of an inflammatory response in resident intestinal lamina propria cells -use of a human organ culture model
Q28655489	Insights into the effects of long-term artificial selection on seed size in maize
Q38872143	Integrated analysis of gene expression and metabolic fluxes in PHA-producing Pseudomonas putida grown on glycerol
Q42778320	Integrated proteomic and transcriptomic analysis revealslong noncoding RNA HOTAIR promotes hepatocellular carcinoma cell proliferation by regulating opioid growth factor receptor (OGFr).
Q92670360	Integrated systems-genetic analyses reveal a network target for delaying glioma progression
Q40452081	Integrating global proteomic and genomic expression profiles generated from islet alpha cells: opportunities and challenges to deriving reliable biological inferences.
Q35814729	Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response
Q30586189	Integrative analysis of proteomic and transcriptomic data for identification of pathways related to simvastatin-induced hepatotoxicity
Q33642358	Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes
Q92129196	Inter-chromosomal coupling between vision and pigmentation genes during genomic divergence
Q90146634	Interactive Web Tool for Standardizing Proteomics Workflow for Liquid Chromatography-Mass Spectrometry Data
Q42960221	Interdependence of signal processing and analysis of urine 1H NMR spectra for metabolic profiling
Q34751866	Interlocking transcriptomics, proteomics and toponomics technologies for brain tissue analysis in murine hippocampus
Q46031696	Intralipid protects the heart in late pregnancy against ischemia/reperfusion injury via Caveolin2/STAT3/GSK-3β pathway.
Q54380099	Iron chelation by cranberry juice and its impact on Escherichia coli growth.
Q33264398	Iron regulation of the major virulence factors in the AIDS-associated pathogen Cryptococcus neoformans
Q30474141	Is gene activity in plant cells affected by UMTS-irradiation? A whole genome approach
Q36649298	Isolation of neuronal chromatin from brain tissue
Q34308629	Joint Adaptive Mean-Variance Regularization and Variance Stabilization of High Dimensional Data
Q92189114	Joint Transcriptomic Analysis of Lung Cancer and Other Lung Diseases
Q60959901	KILchip v1.0: A Novel Merozoite Protein Microarray to Facilitate Malaria Vaccine Candidate Prioritization
Q33366123	Key issues in conducting a meta-analysis of gene expression microarray datasets
Q35085839	Kinome and mRNA expression profiling of high-grade osteosarcoma cell lines implies Akt signaling as possible target for therapy.
Q30555221	LMX1B is essential for the maintenance of differentiated podocytes in adult kidneys
Q36240643	LPS-induced modules of co-expressed genes in equine peripheral blood mononuclear cells
Q30570006	Large oncosomes mediate intercellular transfer of functional microRNA.
Q33573403	Large scale immune profiling of infected humans and goats reveals differential recognition of Brucella melitensis antigens
Q33237195	Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
Q31133147	Large scale statistical inference of signaling pathways from RNAi and microarray data
Q33428343	Learning from microarray interlaboratory studies: measures of precision for gene expression
Q34455971	Life without oxygen: gene regulatory responses of the crucian carp (Carassius carassius) heart subjected to chronic anoxia
Q42684755	Linear model for fast background subtraction in oligonucleotide microarrays
Q35004231	Localization- and mutation-dependent microRNA (miRNA) expression signatures in gastrointestinal stromal tumours (GISTs), with a cluster of co-expressed miRNAs located at 14q32.31.
Q38325838	Long-term maintenance of hematopoietic stem cells does not require contact with embryo-derived stromal cells in cocultures
Q40110140	MEIS homeodomain proteins facilitate PARP1/ARTD1-mediated eviction of histone H1.
Q35093811	Major aging-associated RNA expressions change at two distinct age-positions.
Q33594374	Making informed choices about microarray data analysis
Q53112710	Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping.
Q34275669	Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes
Q36446231	Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster
Q35040604	Massive transcriptional perturbation in subgroups of diffuse large B-cell lymphomas
Q34046901	Maternal high-fat diet interacts with embryonic Cited2 genotype to reduce Pitx2c expression and enhance penetrance of left-right patterning defects
Q59209932	Maximising sensitivity for detecting changes in protein expression: Experimental design using minimal CyDyes
Q35634159	Measurement of antibody responses to Modified Vaccinia virus Ankara (MVA) and Dryvax(®) using proteome microarrays and development of recombinant protein ELISAs
Q33504384	Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia
Q37162950	Meiotic Interactors of a Mitotic Gene TAO3 Revealed by Functional Analysis of its Rare Variant.
Q50995185	Melanoma inhibitory activity promotes melanoma development through activation of YBX1.
Q39262830	Melanomas resist T-cell therapy through inflammation-induced reversible dedifferentiation
Q46922833	Memantine upregulates BDNF and prevents dopamine deficits in SIV-infected macaques: a novel pharmacological action of memantine.
Q33268788	Meta-analysis of several gene lists for distinct types of cancer: a simple way to reveal common prognostic markers
Q57270698	MetaboDiff: an R package for differential metabolomic analysis
Q40201374	Metabolic shifts in residual breast cancer drive tumor recurrence
Q41330142	Metabolomic and transcriptomic stress response of Escherichia coli
Q31033299	Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method
Q42874375	MiR-210 is induced by Oct-2, regulates B cells, and inhibits autoantibody production
Q33712931	MicroRNA Profiling Using Fluorescence-Labeled Beads: Data Acquisition and Processing
Q21245471	MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells
Q27305161	MicroRNA dysregulation in the spinal cord following traumatic injury
Q34604367	MicroRNA expression alterations are linked to tumorigenesis and non-neoplastic processes in pancreatic ductal adenocarcinoma
Q41928691	MicroRNA expression and its detection in human supraglottic laryngeal squamous cell carcinoma
Q36470289	MicroRNA expression in the adult mouse central nervous system
Q36307621	MicroRNA expression profiles differentiate chronic pain condition subtypes
Q33938274	MicroRNA expression profiling in archival tissue specimens: methods and data processing
Q36522330	MicroRNA expression profiling of peripheral blood samples predicts resistance to first-line sunitinib in advanced renal cell carcinoma patients
Q37160342	MicroRNA expression ratio is predictive of head and neck squamous cell carcinoma
Q28744335	MicroRNA profiling during cardiomyocyte-specific differentiation of murine embryonic stem cells based on two different miRNA array platforms
Q24811302	MicroRNA profiling of the murine hematopoietic system
Q33494724	MicroRNA-125a is over-expressed in insulin target tissues in a spontaneous rat model of Type 2 Diabetes
Q21142669	MicroRNA-145 targets YES and STAT1 in colon cancer cells
Q35260085	MicroRNA-193b-3p acts as a tumor suppressor by targeting the MYB oncogene in T-cell acute lymphoblastic leukemia
Q37423734	MicroRNA-494 within an oncogenic microRNA megacluster regulates G1/S transition in liver tumorigenesis through suppression of mutated in colorectal cancer
Q47107821	MicroRNA-containing extracellular vesicles released from endothelial colony-forming cells modulate angiogenesis during ischaemic retinopathy.
Q26748607	Microarray analysis in pulmonary hypertension
Q36580173	Microarray analysis of RNA processing and modification
Q24801069	Microarray analysis of gene expression profiles of cardiac myocytes and fibroblasts after mechanical stress, ionising or ultraviolet radiation
Q80845703	Microarray analysis of miRNA gene expression
Q33320174	Microarray based diagnosis profits from better documentation of gene expression signatures
Q39861422	Microarray coupled to quantitative RT-PCR analysis of androgen-regulated genes in human LNCaP prostate cancer cells
Q29617789	Microarray data normalization and transformation
Q38840214	Microarray profiling of preselected CHO host cell subclones identifies gene expression patterns associated with increased production capacity
Q36399439	Microarray technology: beyond transcript profiling and genotype analysis
Q34367176	Microarray-based gene expression profiling of benign, atypical and anaplastic meningiomas identifies novel genes associated with meningioma progression
Q33387712	Microarray-based gene set analysis: a comparison of current methods
Q100762016	Microbial community dynamics in phyto-thermotherapy baths viewed through next generation sequencing and metabolomics approach
Q35575353	Minimal evidence for consistent changes in maize DNA methylation patterns following environmental stress
Q30000831	Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)
Q33396751	Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays
Q91754692	Mitochondrial Akt Signaling Modulated Reprogramming of Somatic Cells
Q92103333	Mitochondrial lipoylation integrates age-associated decline in brown fat thermogenesis
Q92461136	Mitochondrial protein-induced stress triggers a global adaptive transcriptional programme
Q52649228	Mitochondrial-related consequences of heat stress exposure during bovine oocyte maturation persist in early embryo development.
Q40780077	Mixed Integer Linear Programming based machine learning approach identifies regulators of telomerase in yeast
Q31159076	Mixture model normalization for non-targeted gas chromatography/mass spectrometry metabolomics data
Q30585066	MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data
Q31142152	Model-based variance-stabilizing transformation for Illumina microarray data.
Q24792117	Modeling gene expression measurement error: a quasi-likelihood approach
Q30936785	Modeling microarray data using a threshold mixture model
Q33896528	Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species
Q38378629	Modelling transcriptional regulation with a mixture of factor analyzers and variational Bayesian expectation maximization
Q29547403	Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Q34370075	Modified least-variant set normalization for miRNA microarray
Q21202035	Molecular analysis of endothelial progenitor cell (EPC) subtypes reveals two distinct cell populations with different identities.
Q33869229	Molecular correlates of social dominance: a novel role for ependymin in aggression
Q61773574	Molecular profiles and clinical outcome of stage UICC II colon cancer patients
Q40990401	Molecular profiling of long-term survivors identifies a subgroup of glioblastoma characterized by chromosome 19/20 co-gain
Q53575167	Molecular signature of CD34(+) hematopoietic stem and progenitor cells of patients with CML in chronic phase.
Q21132397	Molecular strategies of the Caenorhabditis elegans dauer larva to survive extreme desiccation
Q99619636	MondoA regulates gene expression in cholesterol biosynthesis-associated pathways required for zebrafish epiboly
Q99607473	Multi-scale supervised clustering-based feature selection for tumor classification and identification of biomarkers and targets on genomic data
Q36286862	Multiple myeloma-related deregulation of bone marrow-derived CD34(+) hematopoietic stem and progenitor cells
Q31048682	Multivariate curve resolution of time course microarray data.
Q33322221	Multivariate hierarchical Bayesian model for differential gene expression analysis in microarray experiments
Q24815340	Muscle regeneration in dystrophin-deficient mdx mice studied by gene expression profiling
Q41600591	Mutant huntingtin activates Nrf2-responsive genes and impairs dopamine synthesis in a PC12 model of Huntington's disease
Q38318582	Myb-domain protein Teb1 controls histone levels and centromere assembly in fission yeast
Q34515856	Near-isogenic lines of Triticum aestivum with distinct modes of resistance exhibit dissimilar transcriptional regulation during Diuraphis noxia feeding
Q33768929	Neighbourhood continuity is not required for correct testis gene expression in Drosophila
Q33428653	Nested effects models for learning signaling networks from perturbation data
Q28607697	Network analysis of microRNA and mRNA seasonal dynamics in a highly plastic sensorimotor neural circuit
Q53763092	Network-based expression analysis reveals key genes related to glucocorticoid resistance in infant acute lymphoblastic leukemia.
Q97681341	Neural innervation as a potential trigger of morphological color change and sexual dimorphism in cichlid fish
Q38718928	Neurocalcin Delta Suppression Protects against Spinal Muscular Atrophy in Humans and across Species by Restoring Impaired Endocytosis
Q46303270	New insights into epithelial differentiation of human adipose-derived stem cells
Q33261647	Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: a proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinson's disease using DIGE
Q33509302	Normalization and gene p-value estimation: issues in microarray data processing
Q30796282	Normalization of metabolomics data with applications to correlation maps
Q30596489	Normalization of miRNA qPCR high-throughput data: a comparison of methods
Q37779506	Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity?
Q30809139	Normalyzer: a tool for rapid evaluation of normalization methods for omics data sets
Q40675957	Novel IGH and MYC Translocation Partners in Diffuse Large B-Cell Lymphomas
Q37056269	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation
Q33837080	Novel response to microtubule perturbation in meiosis
Q38849890	Novel structural co-expression analysis linking the NPM1-associated ribosomal biogenesis network to chronic myelogenous leukemia
Q27304589	Nuclear reprogramming: kinetics of cell cycle and metabolic progression as determinants of success
Q38783879	Nucleosomal chromatin in the mature sperm of Drosophila melanogaster
Q33346459	Off-target effects of siRNA specific for GFP
Q36515893	Olfactory Transcriptional Analysis of Salmon Exposed to Mixtures of Chlorpyrifos and Malathion Reveal Novel Molecular Pathways of Neurobehavioral Injury
Q50882414	Oncogenic transformation of lung cells results in distinct exosome protein profile similar to the cell of origin.
Q39126000	Oncolytic effects of parvovirus H-1 in medulloblastoma are associated with repression of master regulators of early neurogenesis
Q41181625	Optimal consistency in microRNA expression analysis using reference-gene-based normalization.
Q58045605	Optimized Preprocessing of Ultra-Performance Liquid Chromatography/Mass Spectrometry Urinary Metabolic Profiles for Improved Information Recovery
Q24814253	Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data
Q42097322	Origin and pathogenesis of nodular lymphocyte-predominant Hodgkin lymphoma as revealed by global gene expression analysis
Q30479714	Orthogonal projections to latent structures as a strategy for microarray data normalization
Q89490490	Outer membrane lipoprotein NlpI scaffolds peptidoglycan hydrolases within multi-enzyme complexes in Escherichia coli
Q38837700	Overexpression of salivary-type amylase reduces the sensitivity to bortezomib in multiple myeloma cells
Q92257704	Overexpression of the Oral Mucosa-Specific microRNA-31 Promotes Skin Wound Closure
Q37053306	Overview of microarray analysis of gene expression and its applications to cervical cancer investigation.
Q39827385	Oxytocin receptor DNA methylation in postpartum depression
Q46329694	P15-T SameSpots: Validating a Novel Approach to 2D Electrophoresis Image Analysis
Q30709709	PIIKA 2: an expanded, web-based platform for analysis of kinome microarray data
Q34160509	PPINGUIN: Peptide Profiling Guided Identification of Proteins improves quantitation of iTRAQ ratios
Q30391654	Pandemic 2009 H1N1 influenza virus causes diffuse alveolar damage in cynomolgus macaques
Q33335133	Parasite burden and CD36-mediated sequestration are determinants of acute lung injury in an experimental malaria model.
Q45964536	Pathway activation patterns in diffuse large B-cell lymphomas.
Q54638231	Patient-based cross-platform comparison of oligonucleotide microarray expression profiles.
Q31148475	Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis
Q34116308	Peripheral blood gene expression: it all boils down to the RNA collection tubes.
Q52715874	Pervasive Protein Thermal Stability Variation during the Cell Cycle.
Q63976989	Phosphoproteomic screening identifies physiological substrates of the CDKL5 kinase
Q35964721	PhyloChip microarray analysis reveals altered gastrointestinal microbial communities in a rat model of colonic hypersensitivity
Q40189342	Plasma and Mucosal Immunoglobulin M, Immunoglobulin A, and Immunoglobulin G Responses to the Vibrio cholerae O1 Protein Immunome in Adults With Cholera in Bangladesh
Q37579753	Plasma microRNA profiles for bladder cancer detection
Q36213254	Plasmodium vivax pre-erythrocytic-stage antigen discovery: exploiting naturally acquired humoral responses
Q40204179	Platelet-derived microvesicles induce differential gene expression in monocytic cells: a DNA microarray study
Q42651287	Polyglutamine Atrophin provokes neurodegeneration in Drosophila by repressing fat.
Q51563386	Poplar extrafloral nectaries: two types, two strategies of indirect defenses against herbivores.
Q31162622	Post-normalization quality assessment visualization of microarray data
Q34205770	Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
Q36972498	Pre-erythrocytic antibody profiles induced by controlled human malaria infections in healthy volunteers under chloroquine prophylaxis
Q33804365	Pre-processing and differential expression analysis of Agilent microRNA arrays using the AgiMicroRna Bioconductor library
Q34303373	Predicting antidisease immunity using proteome arrays and sera from children naturally exposed to malaria
Q33826966	Predicting gene expression in T cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models
Q36909044	Predicting pathway membership via domain signatures.
Q35534336	Predicting the phenotypic values of physiological traits using SNP genotype and gene expression data in mice
Q37437833	Prediction and verification of mouse tRNA gene families
Q33385851	Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays
Q36310061	Prediction of microbial infection of cultured cells using DNA microarray gene-expression profiles of host responses
Q46343091	Preeclampsia: increased expression of soluble ADAM 12.
Q30495306	Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Q33759015	Preprocessing of gene expression data by optimally robust estimators
Q34366144	Probing microRNAs with microarrays: tissue specificity and functional inference
Q46025538	Problematic alcohol use associates with sodium channel and clathrin linker 1 (SCLT1) in trauma-exposed populations.
Q36389431	Processing and classification of protein mass spectra
Q34495128	Profiling humoral immune responses to P. falciparum infection with protein microarrays
Q41766167	Profiling of Selected MicroRNAs in Proliferative Eutopic Endometrium of Women with Ovarian Endometriosis.
Q34310541	Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia
Q58713921	Progression-specific genes identified in microdissected formalin-fixed and paraffin-embedded tissue containing matched ductal carcinoma in situ and invasive ductal breast cancers
Q37226617	Prokineticin 1 signaling and gene regulation in early human pregnancy
Q50531935	Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients.
Q28264898	Protein stains for proteomic applications: which, when, why?
Q35775566	Proteins interaction network and modeling of IGVH mutational status in chronic lymphocytic leukemia
Q49985530	Proteome-wide identification of ubiquitin interactions using UbIA-MS.
Q62142380	Proteome-wide solubility and thermal stability profiling reveals distinct regulatory roles for ATP
Q33396476	Proteomic analyses of monocyte-derived macrophages infected with human immunodeficiency virus type 1 primary isolates from Hispanic women with and without cognitive impairment
Q33524917	Proteomic analysis of peach fruit mesocarp softening and chilling injury using difference gel electrophoresis (DIGE).
Q35875946	Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry
Q31026775	Proteomic biomarkers for acute interstitial lung disease in gefitinib-treated Japanese lung cancer patients
Q92916319	Proteomics Analysis of Extracellular Matrix Remodeling During Zebrafish Heart Regeneration
Q101411039	Proteomics-informed identification of luminal targets for in situ diagnosis of inflammatory bowel disease
Q99707775	Proteomics-informed prediction of rosuvastatin plasma profiles in patients with a wide range of body weight
Q52666164	Purine and folate metabolism as a potential target of sex-specific nutrient allocation in Drosophila and its implication for lifespan-reproduction tradeoff.
Q30485676	Quality assessment and data analysis for microRNA expression arrays
Q34567052	Quality assessment metrics for whole genome gene expression profiling of paraffin embedded samples
Q24814837	Quality determination and the repair of poor quality spots in array experiments
Q39314843	Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational research
Q28468400	Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis
Q39466612	Quantitative chemical proteomics reveals new potential drug targets in head and neck cancer
Q33518038	Quantitative comparison of microarray experiments with published leukemia related gene expression signatures
Q52695726	Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response.
Q39111024	Quantitative proteome profiling of human myoma and myometrium tissue reveals kinase expression signatures with potential for therapeutic intervention
Q36498560	R package MVR for Joint Adaptive Mean-Variance Regularization and Variance Stabilization
Q38315229	RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation
Q52430521	RNA Interference (RNAi) Screening in Drosophila.
Q35598795	RNA expression profiling in depressed patients suggests retinoid-related orphan receptor alpha as a biomarker for antidepressant response
Q50119723	RNA isolation from fetal and adult human tissues for transcriptional profiling
Q35148353	RTS,S vaccination is associated with serologic evidence of decreased exposure to Plasmodium falciparum liver- and blood-stage parasites
Q36662047	RUNX1 mutations in cytogenetically normal acute myeloid leukemia are associated with a poor prognosis and up-regulation of lymphoid genes
Q24791590	Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data
Q29616371	Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
Q31016779	Rank-based methods as a non-parametric alternative of the T-statistic for the analysis of biological microarray data
Q38798135	RankProd 2.0: a refactored Bioconductor package for detecting differentially expressed features in molecular profiling datasets
Q33433707	Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity
Q24308775	Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
Q39404529	Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
Q30831794	Rare and common epilepsies converge on a shared gene regulatory network providing opportunities for novel antiepileptic drug discovery.
Q33833844	Ratio-based analysis of differential mRNA processing and expression of a polyadenylation factor mutant pcfs4 using arabidopsis tiling microarray.
Q28655610	Rationales and approaches for studying metabolism in eukaryotic microalgae
Q49233795	Reactivating TP53 signaling by the novel MDM2 inhibitor DS-3032b as a therapeutic option for high-risk neuroblastoma
Q30484152	Real-time DNA microarray analysis
Q50321973	Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine.
Q34473466	Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing
Q34714112	Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines
Q37254115	Refinement of the androgen response element based on ChIP-Seq in androgen-insensitive and androgen-responsive prostate cancer cell lines.
Q31041034	Regularized Variance Estimation and Variance Stabilization of High Dimensional Data
Q47548086	Regulation of Adult CNS Axonal Regeneration by the Post-transcriptional Regulator Cpeb1.
Q40333883	Regulation of Growth, Cell Shape, Cell Division, and Gene Expression by Second Messengers (p)ppGpp and Cyclic Di-GMP in Mycobacterium smegmatis
Q33756698	Regulation patterns in signaling networks of cancer
Q34476386	Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome
Q35852820	Regulatory network reconstruction reveals genes with prognostic value for chronic lymphocytic leukemia
Q90600318	Rejuvenating conventional dendritic cells and T follicular helper cell formation after vaccination
Q33960605	Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides
Q31048007	Reliability of gene expression ratios for cDNA microarrays in multiconditional experiments with a reference design
Q30900263	RepExplore: addressing technical replicate variance in proteomics and metabolomics data analysis
Q36799061	Replication of Epigenetic Postpartum Depression Biomarkers and Variation with Hormone Levels
Q36617365	Reproducibility of microarray studies: concordance of current analysis methods
Q50592467	Reprogramming of myeloid angiogenic cells by Bartonella henselae leads to microenvironmental regulation of pathological angiogenesis.
Q34964478	Reprogramming to a muscle fate by fusion recapitulates differentiation
Q36367151	Research resource: interplay between the genomic and transcriptional networks of androgen receptor and estrogen receptor α in luminal breast cancer cells
Q35617537	Retinoic acid pathway activity in Wilms tumors and characterization of biological responses in vitro
Q37079266	Retracted: Luciferase-transfected colon adenocarcinoma cell line (DLD-1) for use in Orthotopic Xenotransplantation studies
Q34308389	Revisiting global gene expression analysis
Q31146147	Ridge estimation of the VAR(1) model and its time series chain graph from multivariate time-course omics data.
Q38300515	Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts
Q61649403	Robust ANOVA for microarray data
Q30671122	Robust and efficient parameter estimation in dynamic models of biological systems
Q33252920	Robust computational reconstitution - a new method for the comparative analysis of gene expression in tissues and isolated cell fractions
Q36333169	Role of Calprotectin as a Modulator of the IL27-Mediated Proinflammatory Effect on Endothelial Cells
Q47163350	Role of co-repressor genomic landscapes in shaping the Notch response.
Q28492686	Role of lon, an ATP-dependent protease homolog, in resistance of Pseudomonas aeruginosa to ciprofloxacin
Q51504003	Role of the estrogen/estrogen-receptor-beta axis in the genomic response to pressure overload-induced hypertrophy.
Q37033659	Role of the molybdoflavoenzyme aldehyde oxidase homolog 2 in the biosynthesis of retinoic acid: generation and characterization of a knockout mouse
Q35043680	Role of tumor necrosis factor-α in the human systemic endotoxin-induced transcriptome
Q47971818	SAP1 is a critical post-transcriptional regulator of infectivity in malaria parasite sporozoite stages.
Q33245905	SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology
Q52573956	SECIMTools: a suite of metabolomics data analysis tools.
Q82718379	Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae
Q35036873	Scleral micro-RNA signatures in adult and fetal eyes
Q39635778	Screening and validation of lncRNAs and circRNAs as miRNA sponges
Q38518564	Selection of neural differentiation-specific genes by comparing profiles of random differentiation
Q39674053	Sensitivity and resistance towards isoliquiritigenin, doxorubicin and methotrexate in T cell acute lymphoblastic leukaemia cell lines by pharmacogenomics
Q34505124	Sequential induction of effector function, tissue migration and cell death during polyclonal activation of mouse regulatory T-cells
Q28473465	Serological profiling of a Candida albicans protein microarray reveals permanent host-pathogen interplay and stage-specific responses during candidemia
Q59532173	Serum microRNA profiles in cats with hypertrophic cardiomyopathy
Q57251285	Sesamin as a potential modulator of fatty acid composition in common carp (Cyprinus carpio)
Q51108763	Sex-dependent regulation of fibrosis and inflammation in human left ventricular remodelling under pressure overload.
Q40390424	Shared and Distinct Aspects of the Sepsis Transcriptomic Response to Fecal Peritonitis and Pneumonia.
Q96305494	Shared bacterial communities between soil, stored drinking water, and hands in rural Bangladeshi households
Q24803478	Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis
Q87852511	Simultaneous analysis of the gene expression profiles of cancer and stromal cells in endometrial cancer
Q33264235	Simultaneous host and parasite expression profiling identifies tissue-specific transcriptional programs associated with susceptibility or resistance to experimental cerebral malaria
Q92702669	Site-Specific Expression Pattern of PIWI-Interacting RNA in Skin and Oral Mucosal Wound Healing
Q33511857	Smad4-dependent pathways control basement membrane deposition and endodermal cell migration at early stages of mouse development
Q52319558	Small RNA and Degradome Deep Sequencing Reveals the Roles of microRNAs in Seed Expansion in Peanut (Arachis hypogaea L.).
Q41328427	SoxNeuro orchestrates central nervous system specification and differentiation in Drosophila and is only partially redundant with Dichaete
Q49832163	Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC).
Q33619913	Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays
Q36282263	Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq
Q58803097	Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging
Q38978103	Specific humoral response of hosts with variable schistosomiasis susceptibility.
Q33361027	Spike-in validation of an Illumina-specific variance-stabilizing transformation
Q50666868	Spot intensity ratio statistics in two-channel microarray experiments.
Q90146624	Standardizing Proteomics Workflow for Liquid Chromatography-Mass Spectrometry: Technical and Statistical Considerations
Q34272167	State-of-the art data normalization methods improve NMR-based metabolomic analysis
Q58697402	Statistical Analysis of NMR Metabolic Fingerprints: Established Methods and Recent Advances
Q30987947	Statistical analysis of microarray data
Q30960840	Statistical exploration of variation in quantitative two-dimensional gel electrophoresis data
Q33405691	Statistical methods of background correction for Illumina BeadArray data
Q24800454	Statistical monitoring of weak spots for improvement of normalization and ratio estimates in microarrays
Q33743199	Statistics in Experimental Design, Preprocessing, and Analysis of Proteomics Data
Q37164339	Stereospecific induction of apoptosis in tumor cells via endogenous C16-ceramide and distinct transcripts
Q35264640	Sterile protective immunity to malaria is associated with a panel of novel P. falciparum antigens
Q89637124	Sting nematodes modify metabolomic profiles of host plants
Q35824626	Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea
Q55152243	Structural analysis of human ARS2 as a platform for co-transcriptional RNA sorting.
Q33354635	Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region
Q38796769	Study of Meta-analysis strategies for network inference using information-theoretic approaches.
Q24814798	Sub-array normalization subject to differentiation
Q31159235	Subcellular proteomic analysis of host-pathogen interactions using human monocytes exposed to Yersinia pestis and Yersinia pseudotuberculosis
Q28585425	Suppression of LPS-induced Interferon-gamma and nitric oxide in splenic lymphocytes by select estrogen-regulated microRNAs: a novel mechanism of immune modulation
Q30658155	Symbolic data analysis to defy low signal-to-noise ratio in microarray data for breast cancer prognosis.
Q90663374	Systematic Identification of Housekeeping Genes Possibly Used as References in Caenorhabditis elegans by Large-Scale Data Integration
Q90007474	Systematic Localization of Escherichia coli Membrane Proteins
Q24802942	Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments
Q34388397	Systematic dissection of roles for chromatin regulators in a yeast stress response
Q36209058	Systematic identification of the HSP90 candidate regulated proteome
Q35296643	Systems biology approach predicts antibody signature associated with Brucella melitensis infection in humans
Q39551429	Systems genetics reveals key genetic elements of drought induced gene regulation in diploid potato.
Q34243476	Systems kinomics demonstrates Congo Basin monkeypox virus infection selectively modulates host cell signaling responses as compared to West African monkeypox virus
Q37072911	Systems view of adipogenesis via novel omics-driven and tissue-specific activity scoring of network functional modules
Q37630226	T-bet and Eomes instruct the development of two distinct natural killer cell lineages in the liver and in the bone marrow
Q51803470	T-box transcription factor TBX3 reprogrammes mature cardiac myocytes into pacemaker-like cells.
Q36215165	T-cell exhaustion, co-stimulation and clinical outcome in autoimmunity and infection.
Q33787532	TEAD1-dependent expression of the FoxO3a gene in mouse skeletal muscle
Q33559109	TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data
Q34529467	TT-seq maps the human transient transcriptome
Q28505707	Target gene analysis by microarrays and chromatin immunoprecipitation identifies HEY proteins as highly redundant bHLH repressors
Q34237167	Tbx2 and Tbx3 induce atrioventricular myocardial development and endocardial cushion formation
Q36077087	Technical Advances of the Recombinant Antibody Microarray Technology Platform for Clinical Immunoproteomics
Q35650996	Temporal expression profiling identifies pathways mediating effect of causal variant on phenotype
Q30414518	Temporal- and strain-specific host microRNA molecular signatures associated with swine-origin H1N1 and avian-origin H7N7 influenza A virus infection
Q64991227	Ten quick tips for effective dimensionality reduction.
Q34289012	Testing for differentially-expressed microRNAs with errors-in-variables nonparametric regression
Q33223337	Tests for differentiation in gene expression using a data-driven order or weights for hypotheses
Q60909038	The ERBB-STAT3 Axis Drives Tasmanian Devil Facial Tumor Disease
Q54655541	The Forkhead factor FoxQ1 influences epithelial differentiation.
Q39033496	The Genetic Architecture of Gene Expression in Peripheral Blood
Q42614482	The German cDNA network: cDNAs, functional genomics and proteomics
Q92534382	The Hsp90 isoforms from S. cerevisiae differ in structure, function and client range
Q35780124	The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset
Q36938754	The Phytochemical Shikonin Stimulates Epithelial-Mesenchymal Transition (EMT) in Skin Wound Healing
Q36094443	The Porphyromonas gingivalis ferric uptake regulator orthologue does not regulate iron homeostasis.
Q31082781	The Shivplot: a graphical display for trend elucidation and exploratory analysis of microarray data
Q27681199	The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κB
Q30807609	The analysis of microarray data
Q35022310	The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally
Q28512635	The cardiac transcription network modulated by Gata4, Mef2a, Nkx2.5, Srf, histone modifications, and microRNAs
Q33392676	The chromosomal high-affinity binding sites for the Drosophila dosage compensation complex.
Q33671769	The core and conserved role of MAL is homeostatic regulation of actin levels
Q92726970	The effect of H1N1 vaccination on serum miRNA expression in children: A tale of caution for microRNA microarray studies
Q31033394	The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
Q37153630	The endometrium responds differently to cloned versus fertilized embryos
Q56741555	The expression profile of micro-RNA in endometrium and endometriosis and the influence of ovarian steroids on their expression
Q28475980	The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1-S via negative feedback
Q24794985	The functional landscape of mouse gene expression
Q83214926	The hematopoietic stem cell in chronic phase CML is characterized by a transcriptional profile resembling normal myeloid progenitor cells and reflecting loss of quiescence
Q34883436	The histone demethylase enzyme KDM3A is a key estrogen receptor regulator in breast cancer.
Q33845381	The impact of quantitative optimization of hybridization conditions on gene expression analysis
Q37031482	The impact of self-identified race on epidemiologic studies of gene expression
Q52612469	The integrated stress response regulates BMP signalling through effects on translation.
Q40044853	The leukemogenic CALM/AF10 fusion protein alters the subcellular localization of the lymphoid regulator Ikaros
Q41946411	The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: highlights from a multi-level omics approach
Q36959504	The novel ER membrane protein PRO41 is essential for sexual development in the filamentous fungus Sordaria macrospora.
Q36601078	The pitfalls of proteomics experiments without the correct use of bioinformatics tools.
Q58095939	The plant alkaloid conophylline inhibits matrix formation of fibroblasts
Q42126365	The presence of p53 influences the expression of multiple human cytomegalovirus genes at early times postinfection
Q36591345	The recurrent SET-NUP214 fusion as a new HOXA activation mechanism in pediatric T-cell acute lymphoblastic leukemia
Q48166215	The regulation of tetraspanin 8 gene expression-A potential new mechanism in the pathogenesis of bipolar disorder.
Q50952236	The response of fibroblasts to hexagonal nanotopography fabricated by electron beam lithography.
Q33240475	The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison
Q28476745	The temporal dynamics of differential gene expression in Aspergillus fumigatus interacting with human immature dendritic cells in vitro
Q44614567	The transcriptomic response to viral infection of two strains of shrimp (Litopenaeus vannamei)
Q35820376	The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype
Q33971259	The use of genome-wide eQTL associations in lymphoblastoid cell lines to identify novel genetic pathways involved in complex traits
Q90059229	Thermal proteome profiling for interrogating protein interactions
Q57910254	Thermal proteome profiling in bacteria: probing protein state
Q24795297	Three-parameter lognormal distribution ubiquitously found in cDNA microarray data and its application to parametric data treatment
Q35175111	Time since onset of disease and individual clinical markers associate with transcriptional changes in uncomplicated dengue
Q31151428	Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells
Q36325885	Tissue and time specific expression pattern of interferon regulated genes in the chicken.
Q41449548	Tissue-specific and convergent metabolic transformation of cancer correlates with metastatic potential and patient survival
Q33628366	Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.
Q35906423	Towards the uniform distribution of null P values on Affymetrix microarrays
Q48442774	Transcript mapping with high-density oligonucleotide tiling arrays
Q90731790	Transcriptional Profiling of Leucocyte Count Variation from Porcine Peripheral Blood Reveals Differential Gene Expression
Q38513385	Transcriptional and physiological study of the response of Burma mangrove (Bruguiera gymnorhiza) to salt and osmotic stress.
Q34713097	Transcriptional consequence and impaired gametogenesis with high-grade aneuploidy in Arabidopsis thaliana
Q39992013	Transcriptional expression of cis-acting and trans-acting splicing mutations cause autosomal dominant retinitis pigmentosa.
Q33475513	Transcriptional landscape estimation from tiling array data using a model of signal shift and drift
Q36868721	Transcriptional profiling of VEGF-A and VEGF-C target genes in lymphatic endothelium reveals endothelial-specific molecule-1 as a novel mediator of lymphangiogenesis
Q33411968	Transcriptional profiling of mycobacterial antigen-induced responses in infants vaccinated with BCG at birth
Q36195337	Transcriptional profiling of tissue plasticity: role of shifts in gene expression and technical limitations
Q34563880	Transcriptional programming during cell wall maturation in the expanding Arabidopsis stem
Q36546133	Transcriptional response of ex vivo human skin to ionizing radiation: comparison between low- and high-dose effects.
Q34510476	Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores
Q36905880	Transcriptional signatures related to glucose and lipid metabolism predict treatment response to the tumor necrosis factor antagonist infliximab in patients with treatment-resistant depression
Q39197742	Transcriptome assists prognosis of disease severity in respiratory syncytial virus infected infants
Q38315240	Transcriptome profile of macrophages from atherosclerosis-sensitive and atherosclerosis-resistant mice
Q30494811	Transcriptome profiling of selectively bred Pacific oyster Crassostrea gigas families that differ in tolerance of heat shock
Q42125439	Transcriptomic Profiling of Primary Alveolar Epithelial Cell Differentiation in Human and Rat.
Q41892992	Transcriptomic characterization of two major Fusarium resistance quantitative trait loci (QTLs), Fhb1 and Qfhs.ifa-5A, identifies novel candidate genes.
Q34798503	Transcriptomic profiling facilitates classification of response to influenza challenge
Q39302624	Transcriptomic responses of juvenile Pacific whiteleg shrimp, Litopenaeus vannamei, to hypoxia and hypercapnic hypoxia.
Q82422286	Transforming growth factor‐β induces epithelial to mesenchymal transition and suppresses the proliferation and transdifferentiation of cultured human pancreatic duct cells
Q37197707	Translational gene mapping of cognitive decline
Q35533224	Two-stage genome-wide search for epistasis with implementation to Recombinant Inbred Lines (RIL) populations
Q46279328	Ultraviolet-radiation-induced inflammation promotes angiotropism and metastasis in melanoma
Q37219171	Uncovering Driver DNA Methylation Events in Nonsmoking Early Stage Lung Adenocarcinoma
Q37112041	Uncovering growth-suppressive MicroRNAs in lung cancer
Q35098185	Understanding cooperativity of microRNAs via microRNA association networks
Q24300024	Unidirectional transfer of microRNA-loaded exosomes from T cells to antigen-presenting cells
Q42541255	Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets
Q37343066	Urinary protein profiles in a rat model for diabetic complications
Q27342088	Using Multi-objective Optimization to Identify Dynamical Network Biomarkers as Early-warning Signals of Complex Diseases
Q31111982	Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli
Q31142883	Using generalized procrustes analysis (GPA) for normalization of cDNA microarray data
Q34181971	Using polymorphisms in FKBP5 to define biologically distinct subtypes of posttraumatic stress disorder: evidence from endocrine and gene expression studies
Q34255194	Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
Q38708543	Uterine responses to early pre-attachment embryos in the domestic dog and comparisons with other domestic animal species.
Q35586852	Validation of skeletal muscle cis-regulatory module predictions reveals nucleotide composition bias in functional enhancers
Q33530238	Variability of gene expression profiles in human blood and lymphoblastoid cell lines
Q43445767	Variance stabilization for computing and comparing grand mean waveforms in MEG and EEG.
Q34778529	Various components of the insulin-like growth factor system in tumor tissue, cerebrospinal fluid and peripheral blood of pediatric medulloblastoma and ependymoma patients
Q50438626	Versican A-subdomain is required for its adequate function in dermal development
Q33759614	Visualization and statistical comparisons of microbial communities using R packages on Phylochip data
Q34122840	Whole blood-derived miRNA profiles as potential new tools for ovarian cancer screening
Q33534917	Whole genome analysis of p38 SAPK-mediated gene expression upon stress.
Q36615223	Whole genome expression analysis for biologic rational pathway modeling: application in cancer prognosis and therapy prediction
Q33957971	Whole genome identification of C. trachomatis immunodominant antigens after genital tract infections and effect of antibiotic treatment of pigtailed macaques
Q34367448	Whole-genome microarray analysis and functional characterization reveal distinct gene expression profiles and patterns in two mouse models of ileal inflammation.
Q33530059	affyPara-a Bioconductor Package for Parallelized Preprocessing Algorithms of Affymetrix Microarray Data
Q56976241	arrayMagic: two-colour cDNA microarray quality control and preprocessing
Q48776802	cAMP response element-binding protein is a primary hub of activity-driven neuronal gene expression
Q36087913	flowVS: channel-specific variance stabilization in flow cytometry
Q40295340	iPQF: a new peptide-to-protein summarization method using peptide spectra characteristics to improve protein quantification.
Q39654101	mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance
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P356	DOI	10.1093/BIOINFORMATICS/18.SUPPL_1.S96
P3181	OpenCitations bibliographic resource ID	200043
P698	PubMed publication ID	12169536

P50	author	Wolfgang Huber	Q37391155
P2093	author name string	Martin Vingron
		Annemarie Poustka
		Holger Sültmann
		Anja von Heydebreck
P407	language of work or name	English	Q1860
P304	page(s)	S96-104
P577	publication date	2002-01-01
P1433	published in	Bioinformatics	Q4914910
P1476	title	Variance stabilization applied to microarray data calibration and to the quantification of differential expression
P478	volume	18 Suppl 1

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

scientific article (publication date: 2002)

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