A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

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A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD is …
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scholarly articleQ13442814

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P356DOI10.1093/NAR/GKR1156
P3181OpenCitations bibliographic resource ID2774163
P932PMC publication ID3333887
P698PubMed publication ID22180532
P5875ResearchGate publication ID51899066

P50authorKathrin S FröhlichQ58211935
Jörg VogelQ1107809
Kai PapenfortQ41716560
P2093author name stringAllison A Berger
P2860cites workPorin biogenesis activates the sigma(E) response in Salmonella hfq mutantsQ50060988
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, HfqQ21145046
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coliQ24536169
Fast and effective prediction of microRNA/target duplexesQ24537313
Target prediction for small, noncoding RNAs in bacteriaQ24544245
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
GadY, a small-RNA regulator of acid response genes in Escherichia coliQ24563573
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coliQ24563596
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genesQ24598644
Identification of novel small RNAs using comparative genomics and microarraysQ24601229
Reprogramming of anaerobic metabolism by the FnrS small RNAQ24606364
The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coliQ24622607
The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stabilityQ54631609
Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutationsQ70119536
Escherichia coli ppGpp synthetase II activity requires spoTQ70119540
Hyperosmotic shock induces the sigma32 and sigmaE stress regulons of Escherichia coliQ73265531
RpoS-dependent promoters require guanosine tetraphosphate for induction even in the presence of high levels of sigma(s)Q73626179
fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complexQ74027600
Promoter recognition and discrimination by EsigmaS RNA polymeraseQ77333834
Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in Escherichia coliQ82713385
Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coliQ24634637
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteriaQ24641843
Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulenceQ24641915
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq geneQ24643457
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple lociQ24645507
A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesiclesQ24647335
Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its targetQ24647466
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decayQ24669800
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimuriumQ24683356
A survey of small RNA-encoding genes in Escherichia coliQ24684021
Sigma E controls biogenesis of the antisense RNA MicAQ24684061
Translational control and target recognition by Escherichia coli small RNAs in vivoQ24684847
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Identification of a central regulator of stationary-phase gene expression inEscherichia coliQ27976519
Global analysis of small RNA and mRNA targets of HfqQ28184898
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A bioinformatics based approach to discover small RNA genes in the Escherichia coli genomeQ28205081
Novel small RNA-encoding genes in the intergenic regions of Escherichia coliQ28205853
Computational identification of noncoding RNAs in E. coli by comparative genomicsQ28216022
Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymeraseQ28220384
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulonQ28243536
A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesisQ28248562
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiationQ28252581
Micros for microbes: non-coding regulatory RNAs in bacteriaQ28252632
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNAQ28257497
Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteinsQ28265898
Effect of RyhB small RNA on global iron use in Escherichia coliQ28275120
Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesisQ28275777
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNAQ28289704
Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella entericaQ28296796
Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNAQ28297881
Small RNA binding to 5' mRNA coding region inhibits translational initiationQ28305161
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinantQ29615039
Hfq and its constellation of RNAQ29615791
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elementsQ29615996
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAsQ29619938
Comparison of outer membrane porin proteins produced by Escherichia coli and Salmonella typhimuriumQ30451431
Evidence that the outer membrane protein gene nmpC of Escherichia coli K-12 lies within the defective qsr' prophage.Q30451943
SigmaE regulates and is regulated by a small RNA in Escherichia coliQ33281445
Small RNAs in Escherichia coli.Q33539353
Interplay of global regulators and cell physiology in the general stress response of Escherichia coliQ33632476
Identification and characterization of two quiescent porin genes, nmpC and ompN, in Escherichia coli BE.Q33732525
A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptidesQ33738360
Isolation, genetic mapping and some characterization of a mutation in Escherichia coli that affects the processing of ribonuleic acidQ33993212
Small non-coding RNAs and the bacterial outer membraneQ34000397
Positive regulation by small RNAs and the role of HfqQ34006620
Base pairing small RNAs and their roles in global regulatory networksQ34061171
Acid stress activation of the sigma(E) stress response in Salmonella enterica serovar Typhimurium.Q34147553
The RpoS-mediated general stress response in Escherichia coliQ34189650
Novel mechanism of Escherichia coli porin regulationQ34303232
rpoE, the gene encoding the second heat-shock sigma factor, sigma E, in Escherichia coli.Q34320811
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coliQ34383062
Loss of Hfq activates the sigmaE-dependent envelope stress response in Salmonella entericaQ34568672
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genomeQ34707860
Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypesQ34971662
Antisense RNAs in plasmids: control of replication and maintenanceQ35013448
In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elementsQ35120775
Stationary-phase physiologyQ35919834
Global regulation of the Salmonella enterica serovar typhimurium major porin, OmpDQ35924391
Modulating the outer membrane with small RNAsQ36584942
Insertion hot spot for horizontally acquired DNA within a bidirectional small-RNA locus in Salmonella enterica.Q36672919
The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase.Q36736448
Small RNAs controlling outer membrane porinsQ36763357
The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behaviorQ37051352
Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella entericaQ37451484
Computational prediction of sRNAs and their targets in bacteria.Q37671500
The role of Hfq in bacterial pathogensQ37676558
The rpoE gene encoding the sigma E (sigma 24) heat shock sigma factor of Escherichia coli.Q37694796
Stationary phase in gram-negative bacteria.Q37710717
mRNA helicase activity of the ribosomeQ38331986
Comparison of DeltarelA strains of Escherichia coli and Salmonella enterica serovar Typhimurium suggests a role for ppGpp in attenuation regulation of branched-chain amino acid biosynthesisQ39529660
Heat shock regulation of sigmaS turnover: a role for DnaK and relationship between stress responses mediated by sigmaS and sigma32 in Escherichia coliQ39844060
Antisense RNA control in bacteria, phages, and plasmidsQ40573014
Shigella flexneri induces apoptosis in infected macrophagesQ41614246
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivityQ41863185
Small RNA-induced mRNA degradation achieved through both translation block and activated cleavageQ41912798
What makes an Escherichia coli promoter sigma(S) dependent? Role of the -13/-14 nucleotide promoter positions and region 2.5 of sigma(S).Q43544098
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.Q43576806
Limiting factors in Escherichia coli fed-batch production of recombinant proteins.Q44229041
Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case.Q45958746
Open complex formation in vitro by sigma38 (rpoS) RNA polymerase: roles for region 2 amino acids.Q46019343
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Construction of targeted single copy lac fusions using lambda Red and FLP-mediated site-specific recombination in bacteriaQ48298401
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesImageQuantQ112270642
P433issue8
P407language of work or nameEnglishQ1860
P304page(s)3623-40
P577publication date2012-04-01
P1433published inNucleic Acids ResearchQ135122
P1476titleA conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
P478volume40

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