Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins

scientific article

Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.JMB.2006.09.004
P3181OpenCitations bibliographic resource ID3174206
P698PubMed publication ID17007876

P50authorMartin OvergaardQ56167048
P2093author name stringPoul Valentin-Hansen
Jesper Johansen
Anders Aamann Rasmussen
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectmembrane proteinQ423042
P304page(s)1-8
P577publication date2006-11-17
P1433published inJournal of Molecular BiologyQ925779
P1476titleConserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins
P478volume364

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cites work (P2860)
Q57900044A Deg-protease family protein in marine Synechococcus is involved in outer membrane protein organization
Q33738360A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides
Q30152770A Suppressor Mutation That Creates a Faster and More Robust σE Envelope Stress Response
Q76319373A conserved RNA seed-pairing domain directs small RNA-mediated stress resistance in enterobacteria
Q28255704A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
Q24647335A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles
Q24672099A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
Q34707860A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
Q42706878Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions
Q42132536An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding
Q45162465Appropriate Regulation of the σE-Dependent Envelope Stress Response Is Necessary To Maintain Cell Envelope Integrity and Stationary-Phase Survival in Escherichia coli.
Q30155422Assembly of Outer Membrane β-Barrel Proteins: the Bam Complex
Q37389545Bacterial chromosome-encoded small regulatory RNAs
Q27692531Bacterial small RNA regulators: versatile roles and rapidly evolving variations
Q39242596Bartonella henselae trimeric autotransporter adhesin BadA expression interferes with effector translocation by the VirB/D4 type IV secretion system
Q30157280Biogenesis of beta-barrel membrane proteins in bacteria and eukaryotes: evolutionary conservation and divergence
Q38340396C-Terminally Truncated Derivatives of Escherichia coli Hfq Are Proficient in Riboregulation
Q34762383Cell wall stress activates expression of a novel stress response facilitator (SrfA) under σ22 (AlgT/U) control in Pseudomonas aeruginosa
Q21562607Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membrane
Q46449462Characterization of the micA gene encoding a small regulatory σE-dependent RNA in Salmonella enterica serovar Typhimurium
Q42059829Characterization of the role of ribonucleases in Salmonella small RNA decay
Q28488946CodY activates transcription of a small RNA in Bacillus subtilis
Q34540586Competing endogenous RNAs: a target-centric view of small RNA regulation in bacteria
Q37151759Complex transcriptional and post-transcriptional regulation of an enzyme for lipopolysaccharide modification
Q34528651Constitutive expression of the maltoporin LamB in the absence of OmpR damages the cell envelope
Q41929636Cross-talk suppression between the CpxA-CpxR and EnvZ-OmpR two-component systems in E. coli
Q92591560Defining the regulon of genes controlled by σE , a key regulator of the cell envelope stress response in Streptomyces coelicolor
Q41398781Demarcating SurA activities required for outer membrane targeting of Yersinia pseudotuberculosis adhesins
Q34504665Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli
Q30156805Dissection of β-barrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli
Q47147972Dual Regulation of the Small RNA MicC and the Quiescent Porin OmpN in Response to Antibiotic Stress in Escherichia coli
Q41673140Early Transcriptome Response of Lactococcus lactis to Environmental Stresses Reveals Differentially Expressed Small Regulatory RNAs and tRNAs
Q39006920Envelope Stress Responses: An Interconnected Safety Net.
Q28297881Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
Q27024583Experimental approaches to identify small RNAs and their diverse roles in bacteria--what we have learnt in one decade of MicA research
Q92282750Fine-Tuning of σE Activation Suppresses Multiple Assembly-Defective Mutations in Escherichia coli
Q33504535Global analysis of extracytoplasmic stress signaling in Escherichia coli
Q54374145Gravity sensing by Escherichia coli.
Q24680586Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli
Q54293188Hfq reduces envelope stress by controlling expression of envelope-localized proteins and protein complexes in enteropathogenic Escherichia coli.
Q37385843High-throughput sequencing reveals suppressors of Vibrio cholerae rpoE mutations: one fewer porin is enough
Q37128051Identification of IbeR as a stationary-phase regulator in meningitic Escherichia coli K1 that carries a loss-of-function mutation in rpoS
Q33595238Identification of a novel anti-sigmaE factor in Neisseria meningitidis
Q24646592Identification of a sigma B-dependent small noncoding RNA in Listeria monocytogenes
Q36164568Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli
Q36747192Impact of the RNA chaperone Hfq on the fitness and virulence potential of uropathogenic Escherichia coli.
Q34761479Impairment of ribosome maturation or function confers salt resistance on Escherichia coli cells
Q57039543In silico 'fishing' using known small regulatory RNA (sRNA) candidates as the decoy from Escherichia coli, Salmonella typhi and Salmonella typhimurium manifested 14 novel sRNA candidates in the orthologous region of Proteus mirabilis
Q35000915In vivo expression and purification of aptamer-tagged small RNA regulators
Q42583916Inactivation of Haemophilus influenzae lipopolysaccharide biosynthesis genes interferes with outer membrane localization of the hap autotransporter
Q57751882Inhibitor of intramembrane protease RseP blocks the σ response causing lethal accumulation of unfolded outer membrane proteins
Q30156852Involvement and necessity of the Cpx regulon in the event of aberrant beta-barrel outer membrane protein assembly
Q41015455LuxS-dependent AI-2 production is not involved in global regulation of natural product biosynthesis in Photorhabdus and Xenorhabdus
Q90267038Maintaining Integrity Under Stress: Envelope Stress Response Regulation of Pathogenesis in Gram-Negative Bacteria
Q26778679Mechanism to control the cell lysis and the cell survival strategy in stationary phase under heat stress
Q24629569MicA sRNA links the PhoP regulon to cell envelope stress
Q28244052MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
Q41814143Molecular characterization and identification of proteins regulated by Hfq in Neisseria meningitidis
Q42725747Multiple Transcriptional Factors Regulate Transcription of the rpoE Gene in Escherichia coli under Different Growth Conditions and When the Lipopolysaccharide Biosynthesis Is Defective
Q34309309MzrA-EnvZ Interactions in the Periplasm Influence the EnvZ/OmpR Two-Component Regulon
Q28263595Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq
Q37543423Novel RpoS-Dependent Mechanisms Strengthen the Envelope Permeability Barrier during Stationary Phase
Q36358643Novel approaches to developing new antibiotics for bacterial infections
Q52620638Novel pathway directed by σ E to cause cell lysis in Escherichia coli.
Q34350583Novel regulatory small RNAs in Streptococcus pyogenes
Q92867207Outer Membrane Porins
Q42091654PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins
Q37392501Poly(A)-assisted RNA decay and modulators of RNA stability
Q36386026Post-transcriptional regulation of gene expression in Yersinia species
Q33733921Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, sigmaE.
Q90138932Prevalence of small base-pairing RNAs derived from diverse genomic loci
Q37451484Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica
Q42579303Proteome analysis of the Escherichia coli heat shock response under steady-state conditions
Q92441481Proteomic Analyses Reveal New Insights on the Antimicrobial Mechanisms of Chitosan Biopolymers and Their Nanosized Particles against Escherichia coli
Q35683145Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets.
Q26776000Regulated Control of the Assembly and Diversity of LPS by Noncoding sRNAs
Q37348683Regulation by transcription factors in bacteria: beyond description
Q42714248Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway
Q24595082Regulatory RNAs in bacteria
Q42713382Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA
Q28731266Reversal of the ΔdegP phenotypes by a novel rpoE allele of Escherichia coli
Q26766030Role of Small Noncoding RNAs in Bacterial Metabolism
Q34740748Role of the periplasmic chaperones Skp, SurA, and DegQ in outer membrane protein biogenesis in Neisseria meningitidis
Q24684061Sigma E controls biogenesis of the antisense RNA MicA
Q33281445SigmaE regulates and is regulated by a small RNA in Escherichia coli
Q24669800SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
Q36900606Signaling mechanisms for activation of extracytoplasmic function (ECF) sigma factors
Q36709429Small RNA Regulation of TolC, the Outer Membrane Component of Bacterial Multidrug Transporters
Q36668567Small RNA regulators and the bacterial response to stress
Q28243536Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
Q41295271Small RNAs regulating biofilm formation and outer membrane homeostasis
Q38084831Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella
Q37348337Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects
Q37710717Stationary phase in gram-negative bacteria.
Q38213227Stress-induced remodeling of the bacterial proteome
Q27658064Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
Q46293888Structure, function and regulation of Pseudomonas aeruginosa porins.
Q92309893Structures and mechanism of transcription initiation by bacterial ECF factors
Q40028342Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA.
Q38707587Survival guide: Escherichia coli in the stationary phase
Q28275777Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis
Q37051352The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior
Q39326888The Small RNA GcvB Promotes Mutagenic Break Repair by Opposing the Membrane Stress Response
Q34129364The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression
Q30157117The beta-barrel outer membrane protein assembly complex of Neisseria meningitidis
Q37775698The critical role of RNA processing and degradation in the control of gene expression.
Q33318472The extracytoplasmic stress factor, sigmaE, is required to maintain cell envelope integrity in Escherichia coli
Q40749797The green tea polyphenol EGCG inhibits E. coli biofilm formation by impairing amyloid curli fibre assembly and downregulating the biofilm regulator CsgD via the σ(E) -dependent sRNA RybB.
Q36189994The multicopy sRNA LhrC controls expression of the oligopeptide-binding protein OppA in Listeria monocytogenes
Q92902297The protein regulator ArgR and the sRNA derived from the 3'-UTR region of its gene, ArgX, both regulate the arginine deiminase pathway in Lactococcus lactis
Q37392505The role of 3'-5' exoribonucleases in RNA degradation
Q21263115The small regulatory RNA molecule MicA is involved in Salmonella enterica serovar Typhimurium biofilm formation
Q40987640The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase
Q90657919Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica
Q41826751Transcript profiling and inference of Escherichia coli K-12 ArcA activity across the range of physiologically relevant oxygen concentrations
Q34468976Transcriptomic profiling of Yersinia pseudotuberculosis reveals reprogramming of the Crp regulon by temperature and uncovers Crp as a master regulator of small RNAs
Q21563354Translation enhancing ACA motifs and their silencing by a bacterial small regulatory RNA
Q28277943ncRNAs and thermoregulation: a view in prokaryotes and eukaryotes
Q35751282sRNA-Mediated Regulation of P-Fimbriae Phase Variation in Uropathogenic Escherichia coli.
Q36434674sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria.

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