Trouble is coming: Signaling pathways that regulate general stress responses in bacteria

scientific article published on 13 June 2019

Trouble is coming: Signaling pathways that regulate general stress responses in bacteria is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1074/JBC.REV119.005593
P932PMC publication ID6682744
P698PubMed publication ID31197038

P2093author name stringSusan Gottesman
P2860cites workHfq is necessary for regulation by the untranslated RNA DsrAQ24548921
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coliQ24563821
Identification of novel small RNAs using comparative genomics and microarraysQ24601229
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq geneQ24643457
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple lociQ24645507
Identification of a central regulator of stationary-phase gene expression inEscherichia coliQ27976519
Temperature sensing by the dsrA promoterQ28181441
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Regulation of RssB-dependent proteolysis in Escherichia coli: a role for acetyl phosphate in a response regulator-controlled processQ74355686
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Regulation of acetate metabolism and coordination with the TCA cycle via a processed small RNAQ90784898
Where to begin? Sigma factors and the selectivity of transcription initiation in bacteriaQ92234384
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Structural basis for inhibition of a response regulator of σS stability by a ClpXP antiadaptorQ93039158
Mechanisms of Bacterial Transcription TerminationQ93056454
The interaction between sigmaS, the stationary phase sigma factor, and the core enzyme of Escherichia coli RNA polymeraseQ43936637
DksA and ppGpp Regulate the σS Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP.Q46276966
Control of RpoS in global gene expression of Escherichia coli in minimal media.Q46324887
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Hfq links translation repression to stress-induced mutagenesis in E. coliQ47104096
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Hfq and Hfq-dependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar TyphimuriumQ50030594
Multiple pathways for regulation of sigmaS (RpoS) stability in Escherichia coli via the action of multiple anti-adaptorsQ50063012
Protection of the general stress response σS factor by the CrsR regulator allows a rapid and efficient adaptation of Shewanella oneidensis.Q50524245
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The response regulator RssB, a recognition factor for sigmaS proteolysis in Escherichia coli, can act like an anti-sigmaS factor.Q52974214
Role of GacA, LasI, RhlI, Ppk, PsrA, Vfr and ClpXP in the regulation of the stationary-phase sigma factor rpoS/RpoS in Pseudomonas.Q53652891
A Single-Domain Response Regulator Functions as an Integrating Hub To Coordinate General Stress Response and Development in Alphaproteobacteria.Q54201977
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12.Q54495569
The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stabilityQ54631609
Global Regulation by CsrA and Its RNA Antagonists.Q55112803
6S RNA, a Global Regulator of Transcription.Q55259546
Endogenous rRNA Sequence Variation Can Regulate Stress Response Gene Expression and PhenotypeQ57044806
Negative Control of RpoS Synthesis by the sRNA ReaL inQ58694980
Spatial organization of different sigma factor activities and c-di-GMP signalling within the three-dimensional landscape of a bacterial biofilmQ58718953
Coordinated Hibernation of Transcriptional and Translational Apparatus during Growth Transition of Escherichia coli to Stationary PhaseQ58751513
Transcriptional Responses to ppGpp and DksA.Q64915092
Experimental Evolution of Escherichia coli K-12 at High pH and with RpoS Induction.Q64993466
Antisense RNAQ67698980
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Novel small RNA-encoding genes in the intergenic regions of Escherichia coliQ28205853
Regulation and mode of action of the second small RNA activator of RpoS translation, RprAQ28212671
The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNAQ28249368
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNAQ28257497
Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coliQ28260482
(p)ppGpp: still magical?Q28278758
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNAQ28288672
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNAQ28289704
The RssB response regulator directly targets sigma(S) for degradation by ClpXPQ28359852
STRING v10: protein-protein interaction networks, integrated over the tree of lifeQ29615545
Structural classification of bacterial response regulators: diversity of output domains and domain combinationsQ33245450
Starvation for different nutrients in Escherichia coli results in differential modulation of RpoS levels and stabilityQ33700399
IraL is an RssB anti-adaptor that stabilizes RpoS during logarithmic phase growth in Escherichia coli and ShigellaQ33709540
Regulation of proteolysis of the stationary-phase sigma factor RpoS.Q33725444
Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymeraseQ33786712
TrmL and TusA Are Necessary for rpoS and MiaA Is Required for hfq Expression in Escherichia coliQ33837698
The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) proteinQ33889724
A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coliQ33969406
DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxideQ33996654
Positive regulation by small RNAs and the role of HfqQ34006620
An α/β hydrolase and associated Per-ARNT-Sim domain comprise a bipartite sensing module coupled with diverse output domainsQ34043170
The RpoS-mediated general stress response in Escherichia coliQ34189650
A complex network of small non-coding RNAs regulate motility in Escherichia coliQ34296188
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.Q34327163
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coliQ34383062
Anti-adaptors provide multiple modes for regulation of the RssB adaptor proteinQ34392954
Modulating RssB activity: IraP, a novel regulator of sigma(S) stability in Escherichia coliQ34649165
Biology of trans-translationQ34786767
The PhoP/PhoQ two-component system stabilizes the alternative sigma factor RpoS in Salmonella entericaQ35011827
Protein mistranslation protects bacteria against oxidative stressQ35089000
Stress sigma factor RpoS degradation and translation are sensitive to the state of central metabolismQ35549117
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of sigma 70 and sigma 38Q35599258
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditionsQ35613001
The putative sigma factor KatF is regulated posttranscriptionally during carbon starvationQ39927181
RpoS proteolysis is regulated by a mechanism that does not require the SprE (RssB) response regulator phosphorylation siteQ40211692
The response regulator RssB controls stability of the sigma(S) subunit of RNA polymerase in Escherichia coli.Q41064227
sRNA-Mediated Control of Transcription Termination in E. coliQ41207283
Translational Repression of the RpoS Antiadapter IraD by CsrA Is Mediated via Translational Coupling to a Short Upstream Open Reading Frame.Q41546256
Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12Q41746387
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivityQ41863185
Global Mapping of Small RNA-Target Interactions in BacteriaQ41926065
RpoS proteolysis is controlled directly by ATP levels in Escherichia coliQ42053587
The nlpD gene is located in an operon with rpoS on the Escherichia coli chromosome and encodes a novel lipoprotein with a potential function in cell wall formationQ42494262
The fitness cost of streptomycin resistance depends on rpsL mutation, carbon source and RpoS (sigmaS).Q42590653
Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coliQ42607498
Transcription of the principal sigma-factor genes, rpoD and rpoS, in Pseudomonas aeruginosa is controlled according to the growth phaseQ42675043
Growth phase and (p)ppGpp control of IraD, a regulator of RpoS stability, in Escherichia coliQ42688985
Antitoxin MqsA helps mediate the bacterial general stress responseQ42735911
An infection-relevant transcriptomic compendium for Salmonella enterica Serovar TyphimuriumQ42774408
Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of sigmas activity and levelsQ42911897
Identity and function of a large gene network underlying mutagenic repair of DNA breaksQ42969505
Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysisQ35659418
Translational regulation of the Escherichia coli stress factor RpoS: a role for SsrA and LonQ35879388
ppGpp regulation of RpoS degradation via anti-adaptor protein IraP.Q35921731
Hfq: the flexible RNA matchmakerQ35933178
H-NS regulation of IraD and IraM antiadaptors for control of RpoS degradationQ35943182
A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymeraseQ36060790
Positive Effect of Carbon Sources on Natural Transformation in Escherichia coli: Role of Low-Level Cyclic AMP (cAMP)-cAMP Receptor Protein in the Derepression of rpoSQ36070068
Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q betaQ36104877
Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH.Q36106069
Cloning and physical characterization of katE and katF required for catalase HPII expression in Escherichia coli.Q36422435
The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistanceQ36483740
β-Lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelityQ36737307
The i6A37 tRNA modification is essential for proper decoding of UUX-Leucine codons during rpoS and iraP translationQ36812721
SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteriaQ37012808
A DNA damage response in Escherichia coli involving the alternative sigma factor, RpoS.Q37062112
A protein methyltransferase specific for altered aspartyl residues is important in Escherichia coli stationary-phase survival and heat-shock resistanceQ37256707
The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coliQ37545684
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.Q37556663
SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.Q37583338
The response regulator SprE controls the stability of RpoS.Q37695886
Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and SalmonellaQ38084831
Bacterial sigma factors: a historical, structural, and genomic perspectiveQ38227104
Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coliQ38230079
Regulation of biofilm formation in Salmonella enterica serovar TyphimuriumQ38273227
The general stress response in AlphaproteobacteriaQ38316113
Competition among Hfq-binding small RNAs in Escherichia coliQ38469100
Mechanistic insights into bacterial AAA+ proteases and protein-remodelling machinesQ38660358
Xenogeneic Silencing and Its Impact on Bacterial GenomesQ38881567
GigA and GigB are Master Regulators of Antibiotic Resistance, Stress Responses, and Virulence in Acinetobacter baumannii.Q38926189
Selective adaptor dependent protein degradation in bacteriaQ39273861
Stationary-phase regulation of RpoS translation in Escherichia coliQ39361630
Role for the histone-like protein H-NS in growth phase-dependent and osmotic regulation of sigma S and many sigma S-dependent genes in Escherichia coliQ39474355
A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coliQ39705576
Regulation of Escherichia coli starvation sigma factor (sigma s) by ClpXP proteaseQ39839940
Mutations that increase expression of the rpoS gene and decrease its dependence on hfq function in Salmonella typhimuriumQ39844182
P433issue31
P407language of work or nameEnglishQ1860
P304page(s)11685-11700
P577publication date2019-06-13
P1433published inJournal of Biological ChemistryQ867727
P1476titleTrouble is coming: Signaling pathways that regulate general stress responses in bacteria
P478volume294

Reverse relations

cites work (P2860)
Q94464346Chromosome Segregation Proteins as Coordinators of Cell Cycle in Response to Environmental Conditions
Q99616572Early termination of the Shiga toxin transcript generates a regulatory small RNA
Q99637082Entropy of a bacterial stress response is a generalizable predictor for fitness and antibiotic sensitivity
Q90484335Multiple Small RNAs Interact to Co-regulate Ethanol Tolerance in Zymomonas mobilis
Q90629795Tailoring a Global Iron Regulon to a Uropathogen
Q90657919Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica

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