The i6A37 tRNA modification is essential for proper decoding of UUX-Leucine codons during rpoS and iraP translation

scientific article published on 15 March 2016

The i6A37 tRNA modification is essential for proper decoding of UUX-Leucine codons during rpoS and iraP translation is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1261/RNA.053165.115
P932PMC publication ID4836647
P698PubMed publication ID26979278

P2093author name stringJoseph I Aubee
Morenike Olu
Karl M Thompson
P2860cites workCloning of a human tRNA isopentenyl transferaseQ24290601
Improvement of reading frame maintenance is a common function for several tRNA modificationsQ24535753
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq geneQ24643457
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Codon-biased translation can be regulated by wobble-base tRNA modification systems during cellular stress responsesQ26829008
Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteinsQ27936377
Defective i6A37 modification of mitochondrial and cytosolic tRNAs results from pathogenic mutations in TRIT1 and its substrate tRNAQ28119039
Signal transduction cascade for regulation of RpoS: temperature regulation of DsrAQ28200768
Regulation and mode of action of the second small RNA activator of RpoS translation, RprAQ28212671
The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNAQ28249368
Ethnic differences in frequencies of gene polymorphisms in the MYCL1 region and modulation of lung cancer patients' survivalQ28277108
A 72-base pair AT-rich DNA sequence element functions as a bacterial gene silencerQ47804471
Multiple pathways for regulation of sigmaS (RpoS) stability in Escherichia coli via the action of multiple anti-adaptorsQ50063012
Mini-λ: a tractable system for chromosome and BAC engineeringQ51812826
N6-(Delta 2-isopentenyl)adenosine: biosynthesis in vitro in transfer RNA by an enzyme purified from Escherichia coli.Q54322813
Replacement of the Escherichia coli trp operon attenuation control codons alters operon expression.Q54706200
Mutants of pheV in Escherichia coli affecting control by attenuation of the pheS, T and pheA operons. Two distinct mechanisms for de-attenuation.Q54706203
Isopentenylation of both cytoplasmic and mitochondrial tRNA is affected by a single nuclear mutationQ70254614
Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coliQ72915782
Transfer RNA modification, temperature and DNA superhelicity have a common target in the regulatory network of the virulence of Shigella flexneri: the expression of the virF geneQ73486827
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAsQ28287313
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNAQ28289704
A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stressQ28476548
Biosynthesis of threonylcarbamoyl adenosine (t6A), a universal tRNA nucleosideQ28492588
Identification and functional characterization of the candidate tumor suppressor gene TRIT1 in human lung cancerQ33214688
Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12Q33603147
Identification of the miaB gene, involved in methylthiolation of isopentenylated A37 derivatives in the tRNA of Salmonella typhimurium and Escherichia coliQ33636589
Transfer RNA modification: influence on translational frameshifting and metabolismQ33665578
Regulation of proteolysis of the stationary-phase sigma factor RpoS.Q33725444
One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solutionQ33846270
Microbial Competition: Escherichia coli Mutants That Take Over Stationary Phase CulturesQ34305902
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.Q34327163
Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshiftingQ34365184
Modulating RssB activity: IraP, a novel regulator of sigma(S) stability in Escherichia coliQ34649165
Stress sigma factor RpoS degradation and translation are sensitive to the state of central metabolismQ35549117
Translational regulation of the Escherichia coli stress factor RpoS: a role for SsrA and LonQ35879388
Mutations affecting the ability of Escherichia coli Lrp to bind DNA, activate transcription, or respond to leucineQ35908776
Lambda placMu insertions in genes of the leucine regulon: extension of the regulon to genes not regulated by leucineQ36110262
Mutation of the miaA gene of Agrobacterium tumefaciens results in reduced vir gene expressionQ36117888
Characterization of the regulon controlled by the leucine-responsive regulatory protein in Escherichia coliQ36117943
Reduced leu operon expression in a miaA mutant of Salmonella typhimuriumQ36221632
Increased tRNA modification and gene-specific codon usage regulate cell cycle progression during the DNA damage responseQ36338771
Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.Q37036333
Human cells have a limited set of tRNA anticodon loop substrates of the tRNA isopentenyltransferase TRIT1 tumor suppressor.Q37469508
The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coliQ37545684
Role of ppGpp in rpoS stationary-phase regulation in Escherichia coliQ39680255
Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coliQ39837959
The modified nucleoside 2-methylthio-N6-isopentenyladenosine in tRNA of Shigella flexneri is required for expression of virulence genesQ39847194
Regulation of phenylalanine biosynthesis in Escherichia coli K-12: control of transcription of the pheA operonQ39971616
Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coliQ40871460
Characterization of a deficiency of N6-(delta 2-isopentenyl)-2-methylthioadenosine in the Escherichia coli mutant trpX by use of antibodies to N6-(delta 2-isopentenyl)adenosineQ41066323
Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coliQ41181646
Proteases and their targets in Escherichia coliQ41291324
The ATP-mediated formation of the YgjD-YeaZ-YjeE complex is required for the biosynthesis of tRNA t6A in Escherichia coliQ41595438
Trm9-catalyzed tRNA modifications link translation to the DNA damage responseQ42134963
Transcriptional patterns of the mutL-miaA superoperon of Escherichia coli K-12 suggest a model for posttranscriptional regulationQ42684164
Rare codons play a positive role in the expression of the stationary phase sigma factor RpoS (σ(S)) in Escherichia coliQ45758746
tRNA accumulation and suppression of the bldA phenotype during development in Streptomyces coelicolor.Q45907671
RcsB-BglJ activates the Escherichia coli leuO gene, encoding an H-NS antagonist and pleiotropic regulator of virulence determinantsQ46936031
P433issue5
P407language of work or nameEnglishQ1860
P304page(s)729-742
P577publication date2016-03-15
P1433published inRNAQ7277164
P1476titleThe i6A37 tRNA modification is essential for proper decoding of UUX-Leucine codons during rpoS and iraP translation
P478volume22

Reverse relations

cites work (P2860)
Q57817691An In Vitro Assay to Detect tRNA-Isopentenyl Transferase Activity
Q90240721Can Protein Expression Be Regulated by Modulation of tRNA Modification Profiles?
Q38833563Case for the genetic code as a triplet of triplets
Q49953354Coupling of Flagellar Gene Expression with Assembly in Salmonella enterica
Q37729435Factors That Shape Eukaryotic tRNAomes:  Processing, Modification and Anticodon-Codon Use
Q90448210Gene ssfg_01967 (miaB) for tRNA modification influences morphogenesis and moenomycin biosynthesis in Streptomyces ghanaensis ATCC14672
Q39171009The modified base isopentenyladenosine and its derivatives in tRNA.
Q47110887Translational fidelity and mistranslation in the cellular response to stress
Q33837698TrmL and TusA Are Necessary for rpoS and MiaA Is Required for hfq Expression in Escherichia coli
Q92732858Trouble is coming: Signaling pathways that regulate general stress responses in bacteria

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