Structure and functional properties of prokaryotic small noncoding RNAs

scientific article published on January 1, 2003

Structure and functional properties of prokaryotic small noncoding RNAs is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1007/BF02931326
P953full work available at URLhttp://link.springer.com/article/10.1007/BF02931326/fulltext.html
http://link.springer.com/content/pdf/10.1007/BF02931326
http://link.springer.com/content/pdf/10.1007/BF02931326.pdf
P698PubMed publication ID14533476

P2093author name stringK. Mikulík
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The 54-kD protein of signal recognition particle contains a methionine-rich RNA binding domainQ42068408
Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branchesQ42646003
NMR studies of the most conserved RNA domain of the mammalian signal recognition particle (SRP).Q43205993
The protein cofactor allows the sequence of an RNase P ribozyme to diversify by maintaining the catalytically active structure of the enzyme.Q43206077
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Mutations in the gene for EF-G reduce the requirement for 4.5S RNA in the growth of E. coliQ43797271
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Inhibition of bacterial RNase P by aminoglycoside-arginine conjugatesQ43872501
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Non–coding RNA genes and the modern RNA worldQ22122367
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome bindingQ24533360
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coliQ24536169
Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structureQ24540168
Sm protein-Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structureQ24540360
Traffic at the tmRNA geneQ24542423
The Ribonuclease P DatabaseQ24548410
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Hfq is necessary for regulation by the untranslated RNA DsrAQ24548921
A regulatory RNA (PrrB RNA) modulates expression of secondary metabolite genes in Pseudomonas fluorescens F113Q24548969
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coliQ24563661
A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coliQ24563821
A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)Q24594977
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DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
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DNA polymerase I activity in Escherichia coli is influenced by spot 42 RNAQ24681906
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Division inhibition gene dicF of Escherichia coli reveals a widespread group of prophage sequences in bacterial genomesQ24685575
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Interactions of the non-coding RNA DsrA and RpoS mRNA with the 30 S ribosomal subunitQ28211455
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The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
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The RNA moiety of ribonuclease P is the catalytic subunit of the enzymeQ28262778
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A small viral RNA is required for in vitro packaging of bacteriophage phi 29 DNAQ28290504
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Increased sensitivity to protein synthesis inhibitors in cells lacking tmRNAQ28344639
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A small, unstable RNA molecule of Escherichia coli: Spot 42 RNAQ30051225
Small RNAs in Escherichia coli.Q33539353
Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA.Q44225427
Overproduction of an antisense RNA containing the oop RNA sequence of bacteriophage lambda induces clear plaque formationQ44387692
An E. coli Ribonucleoprotein Containing 4.5 S RNA Resembles Mammalian Signal Recognition ParticleQ45115869
Interaction of E. coli Ffh/4.5S ribonucleoprotein and FtsY mimics that of mammalian signal recognition particle and its receptor.Q46019831
Regulation of production of the antifungal metabolite 2,4-diacetylphloroglucinol in Pseudomonas fluorescens F113: genetic analysis of phlF as a transcriptional repressorQ47879074
Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysisQ47923505
Molecular cloning and phylogenetic analysis of the small cytoplasmic RNA from Listeria monocytogenesQ47968937
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli.Q54543711
Decreased requirement for 4.5S RNA in 16S and 23S rRNA mutants of Escherichia coli.Q54548762
Identification of protein synthesis elongation factor G as a 4.5 S RNA-binding protein in Escherichia coli.Q54588219
Small stable RNAs in Mycoplasma capricolum.Q54667238
10Sa RNA, a small stable RNA of Escherichia coli, is functional.Q54692671
E. coli 4.5S RNA is part of a ribonucleoprotein particle that has properties related to signal recognition particle.Q54706251
The function of micF RNA. micF RNA is a major factor in the thermal regulation of OmpF protein in Escherichia coli.Q54723730
Staphylococcal transfer ribonucleic acids. II. Sequence analysis of isoaccepting glycine transfer ribonucleic acids IA and IB from Staphylococcus epidermidis Texas 26Q56256629
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The Bacterial Toxin RelE Displays Codon-Specific Cleavage of mRNAs in the Ribosomal A SiteQ59580677
10Sa RNA: processing by and inhibition of RNase IIIQ67898137
M1 RNA with large terminal deletions retains its catalytic activityQ68960245
A precursor for a small stable RNA (10Sa RNA) of Escherichia coliQ69096240
Fractionation of 32P-labelled ribonucleic acids on polyacrylamide gels and their characterization by fingerprintingQ69832747
Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzymeQ70371839
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A small RNA that complements mutants in the RNA processing enzyme ribonuclease PQ72693076
In vivo inhibition by a site-specific catalytic RNA subunit of RNase P designed against the BCR-ABL oncogenic products: a novel approach for cancer treatmentQ73386655
Recognition of the T stem-loop of a pre-tRNA substrate by the ribozyme from Bacillus subtilis ribonuclease PQ73395678
Minimal functional structure of Escherichia coli 4.5 S RNA required for binding to elongation factor GQ73733232
The 5'-proximal hairpin loop of lbi RNA is a key structural element in repression of D-galactan II biosynthesis in Klebsiella pneumoniae serotype O1Q73873769
fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complexQ74027600
Temperature-sensitive mutations in various genes of Escherichia coli K12 can be suppressed by the ssrA gene for 10Sa RNA (tmRNA)Q74220487
Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAspQ74252267
Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrBQ77442679
Expression of a small RNA, BS203 RNA, from the yocI-yocJ intergenic region of Bacillus subtilis genomeQ77748816
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The leucine-responsive regulatory protein of Escherichia coli negatively regulates transcription of ompC and micF and positively regulates translation of ompFQ115677509
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Requirements for cleavage by a modified RNase P of a small model substrateQ38355312
tmRNA from Thermus thermophilus. Interaction with alanyl-tRNA synthetase and elongation factor Tu.Q38358401
Ribosomal protein S1 induces a conformational change of tmRNA; more than one protein S1 per molecule of tmRNA.Q38360377
Environmentally regulated gene expression for membrane proteins in Escherichia coliQ39293306
Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA.Q39647190
Role for both DNA and RNA in GTP hydrolysis by the Neisseria gonorrhoeae signal recognition particle receptorQ39705739
Structure and evolution of ribonuclease P RNA in Gram-positive bacteriaQ39718323
Evolutionary variation in bacterial RNase P RNAsQ39725018
H-NS regulates OmpF expression through micF antisense RNA in Escherichia coliQ39841844
Defective export in Escherichia coli caused by DsbA'-PhoA hybrid proteins whose DsbA' domain cannot fold into a conformation resistant to periplasmic proteasesQ39845716
Concentrations of 4.5S RNA and Ffh protein in Escherichia coli: the stability of Ffh protein is dependent on the concentration of 4.5S RNA.Q39899183
Physical map locations of the genes that encode small stable RNAs in Escherichia coliQ39942872
Regulation of gene expression by trans-encoded antisense RNAs.Q40401688
Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNAQ33573620
The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) proteinQ33889724
Oversynthesis of a new Escherichia coli small RNA suppresses export toxicity of DsbA'-PhoA unfoldable periplasmic proteinsQ33931330
Metal ion cooperativity in ribozyme cleavage of RNA.Q33948972
Non-coding RNA's: lightning strikes twiceQ33954446
ssrA (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesisQ33994025
Molecular characterization of global regulatory RNA species that control pathogenicity factors in Erwinia amylovora and Erwinia herbicola pv. gypsophilae.Q33995758
Effective inhibition of herpes simplex virus 1 gene expression and growth by engineered RNase P ribozymeQ34004603
Regulatory interactions of Csr components: the RNA binding protein CsrA activates csrB transcription in Escherichia coliQ34011975
Ribonuclease P: a ribonucleoprotein enzymeQ34046380
Characterization of 10S RNA: A new stable RNA molecule from Escherichia coliQ34192357
C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide.Q34293680
Phosphorylation of OmpR by the osmosensor EnvZ modulates expression of the ompF and ompC genes in Escherichia coliQ34295496
Structure of 4.5S RNA in the signal recognition particle of Escherichia coli as studied by enzymatic and chemical probingQ34361058
RNase P: from biological function to biotechnological applicationsQ34392321
TmRNA is required for correct timing of DNA replication in Caulobacter crescentusQ34580874
The biological roles of trans-translationQ34588848
RNA and RNA-protein complexes as targets for therapeutic interventionQ34594931
Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changesQ34635312
Small cytoplasmic RNA (scRNA) gene from Clostridium perfringens can replace the gene for the Bacillus subtilis scRNA in both growth and sporulationQ34731521
Genetic selection and DNA sequences of 4.5S RNA homologsQ35224976
The leucine-responsive regulatory protein of Escherichia coli negatively regulates transcription of ompC and micF and positively regulates translation of ompF.Q35576418
A mutant hunt for defects in membrane protein assembly yields mutations affecting the bacterial signal recognition particle and Sec machineryQ35692775
Localization of alg, opr, phn, pho, 4.5S RNA, 6S RNA, tox, trp, and xcp genes, rrn operons, and the chromosomal origin on the physical genome map of Pseudomonas aeruginosa PAOQ36109598
The gene for a 4.5S RNA homolog from Mycoplasma pneumoniae: genetic selection, sequence, and transcription analysisQ36109938
Escherichia coli 6S RNA is not essential for growth or protein secretionQ36292524
Escherichia coli 6S RNA gene is part of a dual-function transcription unit.Q36292547
Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease HQ36386816
Small Stable RNAs from Escherichia coli : Evidence for the Existence of New Molecules and for a New Ribonucleoprotein Particle Containing 6S RNAQ36418405
4.5S RNA: does form predict function?Q36678156
Plasmid pT181 replication is regulated by two countertranscriptsQ37676159
A role for the Escherichia coli H-NS-like protein StpA in OmpF porin expression through modulation of micF RNA stabilityQ38307599
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectmicrobiologyQ7193
untranslated RNAQ65989594
bacterial RNAQ75034978
P304page(s)443-468
P577publication date2003-01-01
P1433published inFolia MicrobiologicaQ15762225
P1476titleStructure and functional properties of prokaryotic small noncoding RNAs
P478volume48

Reverse relations

cites work (P2860)
Q37448741A universal TaqMan-based RT-PCR protocol for cost-efficient detection of small noncoding RNA.
Q21263182Biocomputational prediction of small non-coding RNAs in Streptomyces
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Q38172811Regulatory RNAs: charming gene management styles for synthetic biology applications
Q59599337Small Noncoding Regulatory RNAs from Pseudomonas aeruginosa and Burkholderia cepacia Complex.

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