RNA loop-loop interactions as dynamic functional motifs.

scientific article

RNA loop-loop interactions as dynamic functional motifs. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/S0300-9084(02)01401-3
P698PubMed publication ID12458085

P50authorRoland MarquetQ40517949
P2093author name stringChantal Ehresmann
Pascale Romby
Christine Brunel
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Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complexQ33941159
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A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitroQ71145627
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Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?Q73334444
Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?Q73988200
fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complexQ74027600
Antisense RNAs everywhere?Q74238208
Dimerization of MoMuLV genomic RNA: redefinition of the role of the palindromic stem-loop H1 (278-303) and new roles for stem-loops H2 (310-352) and H3 (355-374)Q74477701
Structural basis for binding of the plasmid ColIb-P9 antisense Inc RNA to its target RNA with the 5'-rUUGGCG-3' motif in the loop sequenceQ74495145
Kissing and RNA stability in antisense control of plasmid replicationQ77734631
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Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium bindingQ34362112
In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.Q34362307
An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignmentQ34362441
Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation siteQ34363004
Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcriptionQ34363753
Sequences involved in the dimerisation of human T cell leukaemia virus type-1 RNA.Q34605303
Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNAQ34676099
Characterization of the small RNA of the bacteriophage phi 29 DNA packaging machineQ34704833
Dimerization of human immunodeficiency virus type 1 RNA involves sequences located upstream of the splice donor site.Q34800316
Secondary structure analysis of the RepA mRNA leader transcript involved in control of replication of plasmid R1.Q35222445
Secondary structural features in the 70S RNAs of Moloney murine leukemia and Rous sarcoma viruses as observed by electron microscopy.Q35235534
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Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozymeQ36520912
Maturation of dimeric viral RNA of Moloney murine leukemia virus.Q36652049
Role of the gag polyprotein precursor in packaging and maturation of Rous sarcoma virus genomic RNAQ36795711
RNA tectonics: towards RNA designQ36851293
HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitroQ37427179
Processing of the leader mRNA plays a major role in the induction of thrS expression following threonine starvation in Bacillus subtilis.Q37480478
A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNAQ37592537
High-molecular-weight RNAs of AKR, NZB, and wild mouse viruses and avian reticuloendotheliosis virus all have similar dimer structuresQ37602288
Dimerization of the 3'UTR of bicoid mRNA involves a two-step mechanismQ38295442
Oligonucleotide mapping of the core genomic RNA dimer linkage in human T-cell leukaemia virus type-1.Q38297533
The dimer initiation site hairpin mediates dimerization of the human immunodeficiency virus, type 2 RNA genomeQ38300091
Characterization of loose and tight dimer forms of avian leukosis virus RNA.Q38311186
Is a closing "GA pair" a rule for stable loop-loop RNA complexes?Q38312450
The effect of loop size in antisense and target RNAs on the efficiency of antisense RNA controlQ38323458
Solution studies of the dimerization initiation site of HIV-1 genomic RNA.Q38335346
A study of the dimer formation of Rous sarcoma virus RNA and of its effect on viral protein synthesis in vitroQ38342317
RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles.Q38347194
Identification of sites that act together to direct dimerization of human foamy virus RNA in vitro.Q38347886
A model of PSI dimerization: destabilization of the C278-G303 stem-loop by the nucleocapsid protein (NCp10) of MoMuLV.Q38355655
Control of replication of bacterial plasmids: Genetics, molecular biology, and physiology of the plasmid R1 systemQ40112314
Bulged-out nucleotides in an antisense RNA are required for rapid target RNA binding in vitro and inhibition in vivoQ40393044
tRNA-directed transcription antiterminationQ40395522
RNA foldingQ40428293
An analytical study of the dimerization of in vitro generated RNA of Moloney murine leukemia virus MoMuLV.Q40527529
Antisense RNA control in bacteria, phages, and plasmidsQ40573014
Structure of viral connectors and their function in bacteriophage assembly and DNA packagingQ40646051
Dimerization of retroviral genomic RNAs: structural and functional implicationsQ41257165
NMR structure of the mature dimer initiation complex of HIV-1 genomic RNA.Q41703739
tRNA prefers to kissQ41911137
Repression and derepression of conjugation of plasmid R1 by wild-type and mutated finP antisense RNAQ42616127
Structure and dimerization of HIV-1 kissing loop aptamersQ42656395
Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genomeQ43206580
A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machineryQ43979758
Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom proteinQ44597902
Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportationQ44736556
Genetic evidence of the interaction between tRNA(Lys,3) and U5 facilitating efficient initiation of reverse transcription by human immunodeficiency virus type 1.Q45754514
HIV-1 genome dimerization: kissing-loop hairpin dictates whether nucleotides downstream of the 5' splice junction contribute to loose and tight dimerization of human immunodeficiency virus RNA.Q45761500
A short autocomplementary sequence plays an essential role in avian sarcoma-leukosis virus RNA dimerization.Q45765407
Nucleotide sequences within the U5 region of the viral RNA genome are the major determinants for an human immunodeficiency virus type 1 to maintain a primer binding site complementary to tRNA(His).Q45765891
Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domainsQ45774047
A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA.Q45782574
Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1.Q45852163
Effect of dimerization on the conformation of the encapsidation Psi domain of Moloney murine leukemia virus RNA.Q45858383
RNA localization in developmentQ47747677
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA.Q48047440
Neuronal RNA granules: a link between RNA localization and stimulation-dependent translationQ48706537
Staufen protein associates with the 3'UTR of bicoid mRNA to form particles that move in a microtubule-dependent mannerQ49075903
The HIV-1(Lai) RNA dimerization. Thermodynamic parameters associated with the transition from the kissing complex to the extended dimer.Q52539001
A short autocomplementary sequence in the 5' leader region is responsible for dimerization of MoMuLV genomic RNA.Q54004846
Antisense RNA control of plasmid R1 replication. The dominant product of the antisense rna-mrna binding is not a full RNA duplex.Q54566041
The FinOP repressor system of plasmid R1: analysis of the antisense RNA control of traJ expression and conjugative DNA transfer.Q54583732
The FinO protein of IncF plasmids binds FinP antisense RNA and its target, traJ mRNA, and promotes duplex formation.Q54625360
Insertion sequence IS10 anti-sense pairing initiates by an interaction between the 5' end of the target RNA and a loop in the anti-sense RNA.Q54721541
Temperature jump relaxation studies on the interactions between transfer RNAs with complementary anticodons. The effect of modified bases adjacent to the anticodon triplet.Q54792102
Identification of thein VitroHIV-2/SIV RNA Dimerization Site Reveals Striking Differences with HIV-1Q61911613
The sites of action of the two copy number control functions of plasmid R1Q67248696
New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozymeQ67426634
Control of ColE1 plasmid replication. Intermediates in the binding of RNA I and RNA IIQ67657375
Control of ColE1 plasmid replication. Interaction of Rom protein with an unstable complex formed by RNA I and RNA IIQ67657378
Complexes formed by complementary RNA stem-loops. Their formations, structures and interaction with ColE1 Rom proteinQ67698548
Antisense RNAQ67698980
Anticodon-anticodon interactions in solution. Studies of the self-association of yeast or Escherichia coli tRNAAsp and of their interactions with Escherichia coli tRNAValQ68941037
Control of ColE1 plasmid replication: binding of RNA I to RNA II and inhibition of primer formationQ68973518
The anticodon-anticodon complexQ69363616
Crystallographic refinement of yeast aspartic acid transfer RNAQ69905397
The structure of yeast tRNA(Asp). A model for tRNA interacting with messenger RNAQ69936039
Complex formation between transfer RNA's with complementary anticodonsQ69941536
Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29Q70041564
P433issue9
P304page(s)925-944
P577publication date2002-09-01
P1433published inBiochimieQ2904035
P1476titleRNA loop-loop interactions as dynamic functional motifs
P478volume84

Reverse relations

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