Exploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance

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Exploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKN831
P932PMC publication ID2602780
P698PubMed publication ID18996893
P5875ResearchGate publication ID23461433

P2093author name stringSébastien Fribourg
Isabelle Lebars
Pierre Legrand
Carmelo Di Primo
Noël Pinaud
Ahissan Aimé
P2860cites workCrystal structure of the lysine riboswitch regulatory mRNA elementQ24646661
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanismQ24681092
A new NMR solution structure of the SL1 HIV-1Lai loop-loop dimerQ25255880
Crystal structures of two plasmid copy control related RNA duplexes: An 18 base pair duplex at 1.20 A resolution and a 19 base pair duplex at 1.55 A resolutionQ27620312
A retroviral RNA kissing complex containing only two G⋅C base pairsQ27626111
The complete atomic structure of the large ribosomal subunit at 2.4 A resolutionQ27626400
Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation siteQ27636128
NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamerQ27647789
Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complexQ27651054
Structural insights into amino acid binding and gene control by a lysine riboswitchQ27652083
Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystalsQ27728569
The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complementQ27739451
Stabilizing effects of the RNA 2'-substituent: crystal structure of an oligodeoxynucleotide duplex containing 2'-O-methylated adenosinesQ27748024
Structure of the dimer initiation complex of HIV-1 genomic RNAQ27758783
The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequenceQ27765334
Use of TLS parameters to model anisotropic displacements in macromolecular refinementQ27860499
Coot: model-building tools for molecular graphicsQ27860505
Remarks about protein structure precisionQ27860769
Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutionsQ27860828
MOLMOL: a program for display and analysis of macromolecular structuresQ27860873
Inhibition of rot translation by RNAIII, a key feature of agr functionQ28255084
Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimersQ28280620
DNA aptamers selected against the HIV-1 trans-activation-responsive RNA element form RNA-DNA kissing complexesQ30672419
Interpreting kinetic rate constants from optical biosensor data recorded on a decaying surfaceQ32034101
Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshiftingQ33891568
Loop-loop interaction of HIV-1 TAR RNA with N3'-->P5' deoxyphosphoramidate aptamers inhibits in vitro Tat-mediated transcriptionQ34075254
Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium bindingQ34362112
In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.Q34362307
Aptamers targeted to an RNA hairpin show improved specificity compared to that of complementary oligonucleotidesQ34568976
Recognition elements in rRNA for the tylosin resistance methyltransferase RlmA(II).Q34659044
Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*Q34679472
RNA loop-loop interactions as dynamic functional motifs.Q35012331
Unusual mechanical stability of a minimal RNA kissing complexQ35127497
A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNAQ37592537
Is a closing "GA pair" a rule for stable loop-loop RNA complexes?Q38312450
Two- and three-dimensional HCN experiments for correlating base and sugar resonances in 15N,13C-labeled RNA oligonucleotidesQ38314977
Solution studies of the dimerization initiation site of HIV-1 genomic RNA.Q38335346
Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamerQ39792205
A discrete element 3' of human immunodeficiency virus 1 (HIV-1) and HIV-2 mRNA initiation sites mediates transcriptional activation by an HIV trans activatorQ40650101
tRNA prefers to kissQ41911137
Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom proteinQ44597902
Evaluation of 2'-modified oligonucleotides containing 2'-deoxy gaps as antisense inhibitors of gene expression.Q46040871
Determinants of RNA hairpin loop-loop complex stability.Q54612131
[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.Q55059918
Complexes formed by complementary RNA stem-loops. Their formations, structures and interaction with ColE1 Rom proteinQ67698548
Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosoureaQ69909676
fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complexQ74027600
2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcriptionQ78303909
Real time analysis of the RNAI-RNAII-Rop complex by surface plasmon resonance: from a decaying surface to a standard kinetic analysisQ80626085
P433issue22
P407language of work or nameEnglishQ1860
P921main subjectX-ray crystallographyQ826582
surface plasmon resonanceQ898756
P304page(s)7146-56
P577publication date2008-12-01
P1433published inNucleic Acids ResearchQ135122
P1476titleExploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance
P478volume36

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cites work (P2860)
Q41975860A remarkably stable kissing-loop interaction defines substrate recognition by the Neurospora Varkud Satellite ribozyme.
Q28468281Aptamer-Drug Conjugates
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Q36932938Direct evidence for RNA-RNA interactions at the 3' end of the Hepatitis C virus genome using surface plasmon resonance
Q31015710HAPIscreen, a method for high-throughput aptamer identification.
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Q36901778Intermolecular domain docking in the hairpin ribozyme: metal dependence, binding kinetics and catalysis
Q38308357Nucleic acid aptamers in cancer research, diagnosis and therapy
Q26849947Nucleic acid aptamers: an emerging frontier in cancer therapy
Q64249855RNA 2'-O-Methylation (Nm) Modification in Human Diseases
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Q42115296Shape matters: size-exclusion HPLC for the study of nucleic acid structural polymorphism
Q38296171Single-molecule observations of RNA-RNA kissing interactions in a DNA nanostructure
Q35567471Structure and stability of RNA/RNA kissing complex: with application to HIV dimerization initiation signal
Q34401587The Osmolyte TMAO Stabilizes Native RNA Tertiary Structures in the Absence of Mg2+: Evidence for a Large Barrier to Folding from Phosphate Dehydration
Q92675263tRNA 2'-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila

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