FunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks

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FunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/gpb/NataleBCF14
P356DOI10.1016/J.GPB.2014.05.002
P932PMC publication ID4411368
P698PubMed publication ID25153667
P5875ResearchGate publication ID264900240

P50authorElisa FicarraQ59550821
P2093author name stringStefano Di Carlo
Massimo Natale
Alfredo Benso
P2860cites workUnraveling protein networks with power graph analysisQ21145374
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networksQ24570122
Protein complexes and functional modules in molecular networksQ24683305
Integrative approaches for finding modular structure in biological networksQ26824897
Network biology: understanding the cell's functional organizationQ27861027
Literature mining for the discovery of hidden connections between drugs, genes and diseasesQ28475561
Network motifs: simple building blocks of complex networksQ29547340
Reducing the complexity of complex gene coexpression networks by coupling multiweighted labeling with topological analysisQ37270376
Hypercoagulability and hypofibrinolysis and risk of deep vein thrombosis and splanchnic vein thrombosis: similarities and differencesQ37843168
Advanced glycation end products and neurodegenerative diseases: mechanisms and perspectiveQ37992773
An update on the diagnosis and management of Budd-Chiari syndromeQ38067133
Budd-Chiari syndrome due to giant hydatid cyst: a case report and brief literature reviewQ38114804
Gene expression profiling of HGF/Met activation in neonatal mouse heartQ38493615
Treatment of Budd-Chiari syndrome with inferior vena cava thrombosisQ39872564
iELM--a web server to explore short linear motif-mediated interactionsQ41850199
Integrative network alignment reveals large regions of global network similarity in yeast and humanQ43467712
Spontaneous intrahepatic portosystemic shunt in Budd-Chiari syndromeQ44429707
Clust&See: a Cytoscape plugin for the identification, visualization and manipulation of network clustersQ45007138
Interactional and functional centrality in transcriptional co-expression networksQ45215680
Circulating levels of brain-derived neurotrophic factor: correlation with mood, cognition and motor function.Q45300839
CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networksQ45831156
iMole, a web based image retrieval system from biomedical literatureQ46100594
TransMiner: mining transitive associations among biological objects from text.Q51982596
Hemostatic abnormalities in cirrhosis and tumor-related portal vein thrombosisQ82939368
Percutaneous recanalization of an occluded hepatic vein in a difficult subset of pediatric Budd-Chiari syndromeQ83474994
Meta-analysis: the significance of screening for JAK2V617F mutation in Budd-Chiari syndrome and portal venous system thrombosisQ83589989
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networksQ29547427
Cytoscape 2.8: new features for data integration and network visualizationQ29547471
COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.Q30579745
Understanding network concepts in modulesQ33286658
Graphs in molecular biologyQ33300808
Improving protein function prediction methods with integrated literature dataQ33328326
A review of the literature on three extraintestinal complications of ulcerative colitis: an ulcerative colitis flare complicated by Budd-Chiari syndrome, cerebral venous thrombosis and idiopathic thrombocytopeniaQ33411649
Enrichment map: a network-based method for gene-set enrichment visualization and interpretationQ33749961
GLay: community structure analysis of biological networksQ33760198
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thalianaQ33801141
Assessing the functional coherence of modules found in multiple-evidence networks from ArabidopsisQ33911818
clusterMaker: a multi-algorithm clustering plugin for CytoscapeQ34070756
Progress and promise: the current status of spinal muscular atrophy therapeutics.Q34227846
EnrichNet: network-based gene set enrichment analysis.Q34298569
The procognitive effects of leptin in the brain and their clinical implicationsQ34389081
The ConsensusPathDB interaction database: 2013 updateQ34473397
Mining functional subgraphs from cancer protein-protein interaction networksQ34530412
Prevalence of the activating JAK2 tyrosine kinase mutation V617F in the Budd-Chiari syndromeQ34536215
A network module-based method for identifying cancer prognostic signaturesQ34646243
Systematic curation of protein and genetic interaction data for computable biologyQ34669461
Topological structure analysis of the protein-protein interaction network in budding yeastQ34980439
BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generationQ35557712
Spinal and bulbar muscular atrophy: ligand-dependent pathogenesis and therapeutic perspectivesQ35767605
Evaluation of copy number variations reveals novel candidate genes in autism spectrum disorder-associated pathwaysQ36083120
The architecture of the gene regulatory networks of different tissuesQ36218037
A survey of current software for network analysis in molecular biologyQ36405281
Graph-based methods for analysing networks in cell biologyQ36552759
Identifying protein interaction subnetworks by a bagging Markov random field-based method.Q36559266
Chronic diarrhea, ascites, and protein-losing enteropathy in an infant with hepatic venous outflow obstruction after liver transplantationQ36598921
Brain-derived neurotrophic factor and androgen interactions in spinal neuromuscular systemsQ36626084
Reactome - a curated knowledgebase of biological pathways: megakaryocytes and plateletsQ36628338
Skeletal Muscle in Motor Neuron Diseases: Therapeutic Target and Delivery Route for Potential TreatmentsQ36805205
Protein networking: insights into global functional organization of proteomesQ37093734
Meta-analysis: Its strengths and limitations.Q37205285
P4510describes a project that usesCytoscapeQ3699942
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectCytoscapeQ3699942
P304page(s)178-186
P577publication date2014-08-19
P1433published inGenomics Proteomics and BioinformaticsQ15814350
P1476titleFunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks
P478volume12

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cites work (P2860)
Q45943481Computational systems biology approaches for Parkinson's disease.
Q38430400Global Gene Expression Analysis Reveals Crosstalk between Response Mechanisms to Cold and Drought Stresses in Cassava Seedlings
Q35674545NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases

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