Improving protein function prediction methods with integrated literature data

scientific article

Improving protein function prediction methods with integrated literature data is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bmcbi/GabowLBHG08
P6179Dimensions Publication ID1040332812
P356DOI10.1186/1471-2105-9-198
P932PMC publication ID2375131
P698PubMed publication ID18412966
P5875ResearchGate publication ID5439606

P50authorLawrence HunterQ6504172
William BaumgartnerQ108416444
P2093author name stringDebra S Goldberg
Sonia M Leach
Aaron P Gabow
P2860cites workFast protein classification with multiple networksQ50739922
Using statistical and knowledge-based approaches for literature-based discoveryQ51953854
MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profilingQ57001818
Text-mining and information-retrieval services for molecular biologyQ21184158
Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactomeQ21184164
Towards a proteome-scale map of the human protein–protein interaction networkQ21735930
Gene ontology: tool for the unification of biologyQ23781406
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactionsQ24548456
STRING: known and predicted protein-protein associations, integrated and transferred across organismsQ24558597
Biomedical language processing: what's beyond PubMed?Q24670193
Applying Support Vector Machines for Gene Ontology based gene function predictionQ24792108
Prolinks: a database of protein functional linkages derived from coevolutionQ24801555
Functional classification of proteins for the prediction of cellular function from a protein-protein interaction networkQ24806896
CoPub Mapper: mining MEDLINE based on search term co-publicationQ24811392
Discovering semantic features in the literature: a foundation for building functional associationsQ25257020
A gene network for navigating the literatureQ28269528
Assigning protein functions by comparative genome analysis: Protein phylogenetic profilesQ29039336
MIPS: a database for genomes and protein sequencesQ29614501
A network of protein-protein interactions in yeastQ30004209
Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene setsQ30477452
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).Q30806988
Predicting protein function from protein/protein interaction data: a probabilistic approachQ30811144
GENETAG: a tagged corpus for gene/protein named entity recognitionQ33217261
A literature network of human genes for high-throughput analysis of gene expressionQ33944514
Associating Genes with Gene Ontology Codes Using a Maximum Entropy Analysis of Biomedical LiteratureQ35003471
Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discoveryQ36294114
Whole-genome annotation by using evidence integration in functional-linkage networksQ36852724
Cross-species cluster co-conservation: a new method for generating protein interaction networksQ38280669
Predicting protein function by genomic context: quantitative evaluation and qualitative inferencesQ40414366
From gene networks to gene functionQ40830486
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction mapsQ42659943
Global protein function prediction from protein-protein interaction networksQ47921995
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P921main subjectprotein function predictionQ7251473
P304page(s)198
P577publication date2008-04-15
P1433published inBMC BioinformaticsQ4835939
P1476titleImproving protein function prediction methods with integrated literature data
P478volume9

Reverse relations

cites work (P2860)
Q33911818Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Q34440951Associating disease-related genetic variants in intergenic regions to the genes they impact
Q21092567Biomedical discovery acceleration, with applications to craniofacial development
Q33726193DockAnalyse: an application for the analysis of protein-protein interactions
Q39992601FunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks
Q34915863Gene ontology function prediction in mollicutes using protein-protein association networks
Q57001572Knowledge-Driven Approaches to Genome-Scale Analysis
Q21284192OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression
Q43852062Progressive clustering based method for protein function prediction
Q37270376Reducing the complexity of complex gene coexpression networks by coupling multiweighted labeling with topological analysis
Q30000951Scoring Protein Relationships in Functional Interaction Networks Predicted from Sequence Data
Q33343118Semantic role labeling for protein transport predicates

Search more.