| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1018015526 |
| P356 | DOI | 10.1186/GB-2003-5-1-R6 |
| P932 | PMC publication ID | 395738 |
| P698 | PubMed publication ID | 14709178 |
| P5875 | ResearchGate publication ID | 8931413 |
| P50 | author | Jérôme Wojcik | Q41674036 |
| P2093 | author name string | David Martin | |
| Bernard Jacq | |||
| Christine Brun | |||
| Alain Guénoche | |||
| François Chevenet | |||
| P2860 | cites work | Global protein function prediction from protein-protein interaction networks | Q47921995 |
| Genomic exploration of the hemiascomycetous yeasts: 19. Ascomycetes-specific genes | Q53899134 | ||
| Conserved clusters of functionally related genes in two bacterial genomes. | Q54574568 | ||
| Prediction, assessment and validation of protein interaction maps in bacteria | Q78482210 | ||
| Gene ontology: tool for the unification of biology | Q23781406 | ||
| Functional organization of the yeast proteome by systematic analysis of protein complexes | Q24292209 | ||
| YPD, PombePD and WormPD: model organism volumes of the BioKnowledge library, an integrated resource for protein information | Q24606435 | ||
| The use of gene clusters to infer functional coupling | Q24673189 | ||
| Pex17p of Saccharomyces cerevisiae Is a Novel Peroxin and Component of the Peroxisomal Protein Translocation Machinery | Q24683635 | ||
| The neighbor-joining method: a new method for reconstructing phylogenetic trees | Q25939010 | ||
| A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae | Q27860755 | ||
| A comprehensive two-hybrid analysis to explore the yeast protein interactome | Q27861093 | ||
| Retromer and the sorting nexins Snx4/41/42 mediate distinct retrieval pathways from yeast endosomes | Q27931535 | ||
| Identification of the novel proteins Yip4p and Yip5p as Rab GTPase interacting factors. | Q27932005 | ||
| A screen for genes required for meiosis and spore formation based on whole-genome expression. | Q27937629 | ||
| Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins | Q27938720 | ||
| Combinatorial control in ubiquitin-dependent proteolysis: don't Skp the F-box hypothesis | Q27938760 | ||
| Protein interaction mapping in C. elegans using proteins involved in vulval development | Q28141447 | ||
| Functions of Lsm proteins in mRNA degradation and splicing | Q28143826 | ||
| The protein-protein interaction map of Helicobacter pylori | Q28484787 | ||
| Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles | Q29039336 | ||
| Detecting protein function and protein-protein interactions from genome sequences | Q29547473 | ||
| BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data | Q29614291 | ||
| MIPS: a database for genomes and protein sequences | Q29614501 | ||
| A combined algorithm for genome-wide prediction of protein function | Q29615998 | ||
| Protein interaction maps for complete genomes based on gene fusion events | Q29616048 | ||
| Conservation of gene order: a fingerprint of proteins that physically interact | Q29616049 | ||
| A network of protein-protein interactions in yeast | Q30004209 | ||
| Protein--protein interaction maps: a lead towards cellular functions | Q30671070 | ||
| A genomic approach of the hepatitis C virus generates a protein interaction map. | Q30847495 | ||
| Who's your neighbor? New computational approaches for functional genomics | Q30874386 | ||
| Modular organization of cellular networks | Q34329388 | ||
| A protein linkage map of Escherichia coli bacteriophage T7. | Q34367837 | ||
| Genome-wide analysis of vaccinia virus protein-protein interactions | Q35700178 | ||
| Protein function from the perspective of molecular interactions and genetic networks | Q38523561 | ||
| A re-annotation of the Saccharomyces cerevisiae genome. | Q39770105 | ||
| On the number of protein-protein interactions in the yeast proteome | Q39792198 | ||
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | protein function prediction | Q7251473 |
| protein-protein interaction | Q896177 | ||
| P304 | page(s) | R6 | |
| P577 | publication date | 2003-12-15 | |
| P1433 | published in | Genome Biology | Q5533480 |
| P1476 | title | Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network | |
| P478 | volume | 5 |
| Q34877875 | A highly efficient approach to protein interactome mapping based on collaborative filtering framework |
| Q28716448 | A network analysis of countries' export flows: firm grounds for the building blocks of the economy |
| Q24809459 | A scale of functional divergence for yeast duplicated genes revealed from analysis of the protein-protein interaction network |
| Q34067407 | AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations |
| Q34072192 | An iterative approach of protein function prediction |
| Q35740510 | An iterative network partition algorithm for accurate identification of dense network modules |
| Q37718778 | Applied graph-mining algorithms to study biomolecular interaction networks |
| Q34272604 | Assessing and predicting protein interactions by combining manifold embedding with multiple information integration |
| Q34003586 | Assessing coverage of protein interaction data using capture-recapture models |
| Q33521509 | AtPIN: Arabidopsis thaliana protein interaction network |
| Q38151762 | Atopic dermatitis-associated protein interaction network lead to new insights in chronic sulfur mustard skin lesion mechanisms |
| Q37079445 | Bioinformatics and cancer research: building bridges for translational research |
| Q34539662 | Chapter 5: Network biology approach to complex diseases. |
| Q33302935 | Characterization of protein hubs by inferring interacting motifs from protein interactions |
| Q24794683 | Clustering proteins from interaction networks for the prediction of cellular functions |
| Q33588248 | Collective prediction of protein functions from protein-protein interaction networks |
| Q37214509 | Computational characterization of moonlighting proteins |
| Q33335935 | Defining a modular signalling network from the fly interactome. |
| Q37537283 | Detecting overlapping protein complexes in PPI networks based on robustness. |
| Q51356483 | Detection of protein complexes using a protein ranking algorithm |
| Q33692282 | Determining modular organization of protein interaction networks by maximizing modularity density |
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| Q38448342 | Dynamically searching for a domain for protein function prediction |
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| Q35198634 | How and when should interactome-derived clusters be used to predict functional modules and protein function? |
| Q35810223 | INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity. |
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| Q33328326 | Improving protein function prediction methods with integrated literature data |
| Q35122485 | In silico prediction of protein-protein interactions in human macrophages. |
| Q34628568 | In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment |
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| Q35126269 | Integrative computational and experimental approaches to establish a post-myocardial infarction knowledge map. |
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| Q39528579 | Leaf Proteome Analysis Reveals Prospective Drought and Heat Stress Response Mechanisms in Soybean |
| Q38521378 | Learnability-based further prediction of gene functions in Gene Ontology |
| Q30950386 | MINER: exploratory analysis of gene interaction networks by machine learning from expression data. |
| Q35119008 | Measuring semantic similarities by combining gene ontology annotations and gene co-function networks |
| Q38488558 | Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding |
| Q58563183 | Modelling Self-Organization in Complex Networks Via a Brain-Inspired Network Automata Theory Improves Link Reliability in Protein Interactomes |
| Q40952480 | Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7 |
| Q39965347 | Multifunctional proteins revealed by overlapping clustering in protein interaction network |
| Q46178132 | Network neighborhood analysis with the multi-node topological overlap measure |
| Q37775135 | Network-based function prediction and interactomics: the case for metabolic enzymes |
| Q24670295 | Network-based prediction of protein function |
| Q33934588 | Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme |
| Q34318470 | Nonparametric simulation of signal transduction networks with semi-synchronized update |
| Q35687105 | PAND: A Distribution to Identify Functional Linkage from Networks with Preferential Attachment Property |
| Q33377258 | PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data |
| Q28476763 | Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties |
| Q34014557 | Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions |
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| Q43852062 | Progressive clustering based method for protein function prediction |
| Q35223658 | Protein annotation from protein interaction networks and Gene Ontology |
| Q34728880 | Protein complex detection using interaction reliability assessment and weighted clustering coefficient. |
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| Q35080691 | Protein complex identification by integrating protein-protein interaction evidence from multiple sources |
| Q33693902 | Protein complex prediction based on k-connected subgraphs in protein interaction network. |
| Q47373917 | Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs |
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| Q38460064 | Protein function prediction using guilty by association from interaction networks. |
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| Q30400560 | Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins |
| Q30407238 | Quantification of protein group coherence and pathway assignment using functional association |
| Q64229382 | Reconstruction and Functional Annotation of P311 Protein-Protein Interaction Network Reveals Its New Functions |
| Q36538262 | Restricted mobility of conserved residues in protein-protein interfaces in molecular simulations. |
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