| scholarly article | Q13442814 |
| P2093 | author name string | Ono K | |
| Ruscheinski J | |||
| Wang PL | |||
| Ideker T | |||
| Smoot ME | |||
| P2860 | cites work | Cytoscape: a software environment for integrated models of biomolecular interaction networks | Q24515682 |
| Model of genetic variation in human social networks | Q24651850 | ||
| Integration of biological networks and gene expression data using Cytoscape | Q28681323 | ||
| Transcriptional regulation of protein complexes within and across species | Q35611673 | ||
| P4510 | describes a project that uses | Cytoscape | Q3699942 |
| P433 | issue | 3 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | data integration | Q386824 |
| visualization | Q451553 | ||
| Cytoscape | Q3699942 | ||
| network visualization | Q117285295 | ||
| P304 | page(s) | 431-2 | |
| P577 | publication date | 2011-02-01 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | Cytoscape 2.8: new features for data integration and network visualization | |
| P478 | volume | 27 |
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| Q60910146 | Biomarker identification and trans-regulatory network analyses in esophageal adenocarcinoma and Barrett’s esophagus |
| Q58728096 | Biomarker identification of thyroid associated ophthalmopathy using microarray data |
| Q47139124 | Biomarkers identification for acute myocardial infarction detection via weighted gene co-expression network analysis |
| Q47636137 | Biotin tagging of MeCP2 in mice reveals contextual insights into the Rett syndrome transcriptome. |
| Q33670479 | Blood feeding and Plasmodium infection alters the miRNome of Anopheles stephensi |
| Q50862181 | Body mass index mediates inflammatory response to acute dietary challenges. |
| Q39825329 | Boolean genetic network model for the control of C. elegans early embryonic cell cycles |
| Q50776212 | Boolean modeling of biological regulatory networks: a methodology tutorial. |
| Q38255571 | Boolean modeling: a logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions |
| Q34901991 | Boolean network model for cancer pathways: predicting carcinogenesis and targeted therapy outcomes |
| Q38460232 | Brief Exercises Affect Gene Expression in Circulating Monocytes |
| Q33768197 | Broad phenotypic changes associated with gain of radiation resistance in head and neck squamous cell cancer |
| Q38682214 | Brucea javanica oil emulsion alleviates cachexia induced by Lewis lung cancer cells in mice. |
| Q30834053 | Building a hierarchical organization of protein complexes out of protein association data |
| Q59789403 | Building an octaploid genome and transcriptome of the medicinal plant Pogostemon cablin from Lamiales |
| Q64077912 | Building the drug-GO function network to screen significant candidate drugs for myasthenia gravis |
| Q113307197 | Building, Importing, and Exporting GEXF Graph Files with rgexf |
| Q89967418 | CALISTA: Clustering and LINEAGE Inference in Single-Cell Transcriptional Analysis |
| Q36971505 | CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease. |
| Q58492966 | CIGene: a literature-based online resource for cancer initiation genes |
| Q38496806 | CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations |
| Q30579745 | COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. |
| Q36751791 | CSGene: a literature-based database for cell senescence genes and its application to identify critical cell aging pathways and associated diseases |
| Q47155275 | CTD2 Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network |
| Q37426159 | CVDHD: a cardiovascular disease herbal database for drug discovery and network pharmacology |
| Q28551212 | Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes |
| Q36991517 | Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome |
| Q61443014 | Calour: an Interactive, Microbe-Centric Analysis Tool |
| Q51815353 | Can genetic variability for nitrogen metabolism in the developing ear of maize be exploited to improve yield? |
| Q28674160 | Can inferred provenance and its visualisation be used to detect erroneous annotation? A case study using UniProtKB |
| Q40676447 | Cancer type-dependent genetic interactions between cancer driver alterations indicate plasticity of epistasis across cell types |
| Q37204620 | Candida albicans triggers the expression of inflammatory genes in human umbilical vein endothelial cells |
| Q35405950 | Candidate pathways and genes for nasopharyngeal carcinoma based on bioinformatics study |
| Q42780131 | Canonical NF-kappaB activation is essential for Epstein-Barr virus latent membrane protein 1 TES2/CTAR2 gene regulation |
| Q93147154 | Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages |
| Q60044426 | Cardiac function evaluation for a novel one-step detoxification product of |
| Q64966010 | Cationic liposomes induce cytotoxicity in HepG2 via regulation of lipid metabolism based on whole-transcriptome sequencing analysis. |
| Q36249471 | Cecal MicroRNAome response to Salmonella enterica serovar Enteritidis infection in White Leghorn Layer. |
| Q54978429 | Cell Division Cycle 7-Kinase is a negative regulator of cell-mediated collagen degradation. |
| Q28487107 | Cell reprogramming requires silencing of a core subset of polycomb targets |
| Q35546921 | Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis |
| Q30573980 | CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms |
| Q35604912 | CellWhere: graphical display of interaction networks organized on subcellular localizations |
| Q48293592 | Cellular and Molecular Identity of Tumor-Associated Macrophages in Glioblastoma. |
| Q34505224 | Cellular functions of genetically imprinted genes in human and mouse as annotated in the gene ontology |
| Q36981498 | Centenarians as super-controls to assess the biological relevance of genetic risk factors for common age-related diseases: a proof of principle on type 2 diabetes |
| Q47931457 | ChEMBLSpace--a graphical explorer of the chemogenomic space covered by the ChEMBL database |
| Q92016007 | Chalcone synthase (CHS) family members analysis from eggplant (Solanum melongena L.) in the flavonoid biosynthetic pathway and expression patterns in response to heat stress |
| Q92260714 | Challenges in funding and developing genomic software: roots and remedies |
| Q64110734 | Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal Area |
| Q28820804 | Changes in secondary metabolic profiles of Microcystis aeruginosa strains in response to intraspecific interactions |
| Q28828954 | Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds |
| Q33755846 | Changes in the neuropeptide content of Biomphalaria ganglia nervous system following Schistosoma infection |
| Q59134796 | Changes of Cell Biochemical States Are Revealed in Protein Homomeric Complex Dynamics |
| Q34539656 | Chapter 4: Protein interactions and disease |
| Q34465343 | Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis) |
| Q38430435 | Characterization and predicted role of microRNA expression profiles associated with early childhood obesity |
| Q47767201 | Characterization of In Vivo Resistance to Osimertinib and JNJ-61186372, an EGFR/Met Bispecific Antibody, Reveals Unique and Consensus Mechanisms of Resistance. |
| Q35878757 | Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses |
| Q36581928 | Characterization of breast cancer interstitial fluids by TmT labeling, LTQ-Orbitrap Velos mass spectrometry, and pathway analysis. |
| Q55112459 | Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy. |
| Q28480943 | Characterization of miRNAs in response to short-term waterlogging in three inbred lines of Zea mays |
| Q39108521 | Characterization of the EGFR interactome reveals associated protein complex networks and intracellular receptor dynamics. |
| Q55286847 | Characterization of the Populus Rab family genes and the function of PtRabE1b in salt tolerance. |
| Q38927180 | Characterization of the sebocyte lipid droplet proteome reveals novel potential regulators of sebaceous lipogenesis |
| Q30378764 | Characterizing the Diverse Mutational Pathways Associated with R5-Tropic Maraviroc Resistance: HIV-1 That Uses the Drug-Bound CCR5 Coreceptor. |
| Q34380828 | Cheminformatics aspects of high throughput screening: from robots to models: symposium summary |
| Q30885733 | Chemotaxis by natural populations of coral reef bacteria |
| Q52651186 | Chilling-related cell damage of apple (Malus × domestica Borkh.) fruit cortical tissue impacts antioxidant, lipid and phenolic metabolism. |
| Q35954452 | ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage. |
| Q37586941 | Chronic nicotine exposure systemically alters microRNA expression profiles during post-embryonic stages in Caenorhabditis elegans |
| Q33798680 | Circular RNA alterations are involved in resistance to avian leukosis virus subgroup-J-induced tumor formation in chickens |
| Q61448961 | Circulating miR-3659 may be a potential biomarker of dyslipidemia in patients with obesity |
| Q89686938 | Clades of huge phages from across Earth's ecosystems |
| Q39504639 | Classifying multigraph models of secondary RNA structure using graph-theoretic descriptors |
| Q34514506 | Clone mapper: an online suite of tools for RNAi experiments in Caenorhabditis elegans |
| Q62779992 | Cluster Editing |
| Q46816064 | Clustered, Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9-coupled Affinity Purification/Mass Spectrometry Analysis Revealed a Novel Role of Neurofibromin in mTOR Signaling |
| Q30374983 | Clustering and visualizing similarity networks of membrane proteins. |
| Q61797575 | Clustering of Tau fibrils impairs the synaptic composition of α3-Na/K-ATPase and AMPA receptors |
| Q37508507 | Co-expression analysis and identification of fecundity-related long non-coding RNAs in sheep ovaries |
| Q38476964 | Co-expression network analysis identifies transcriptional modules in the mouse liver. |
| Q33842013 | Co-occurrence of driver and passenger bacteria in human colorectal cancer |
| Q57086703 | Co-occurring nematodes and bacteria in submarine canyon sediments |
| Q64082776 | Co-regulatory Network of Oncosuppressor miRNAs and Transcription Factors for Pathology of Human Hepatic Cancer Stem Cells (HCSC) |
| Q41812663 | CoPAP: Coevolution of presence-absence patterns |
| Q30684148 | Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data |
| Q34856001 | Coevolution analyses illuminate the dependencies between amino acid sites in the chaperonin system GroES-L. |
| Q35091271 | Coherent functional modules improve transcription factor target identification, cooperativity prediction, and disease association |
| Q35756078 | Cold adaptation shapes the robustness of metabolic networks in Drosophila melanogaster |
| Q91362461 | Colibacter massiliensis gen. nov. sp. nov., a novel Gram-stain-positive anaerobic diplococcal bacterium, isolated from the human left colon |
| Q28391219 | Colorectal cancer derived organotypic spheroids maintain essential tissue characteristics but adapt their metabolism in culture |
| Q54212643 | Combined Transcriptomics, Proteomics and Bioinformatics Identify Drug Targets in Spinal Cord Injury. |
| Q36377751 | Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria |
| Q38484704 | Combining animal personalities with transcriptomics resolves individual variation within a wild-type zebrafish population and identifies underpinning molecular differences in brain function |
| Q40247033 | Combining network analysis with Cognitive Work Analysis: insights into social organisational and cooperation analysis |
| Q92127753 | Combining transcriptomics and metabolomics to reveal the underlying molecular mechanism of ergosterol biosynthesis during the fruiting process of Flammulina velutipes |
| Q35050169 | Commensal bacteria control cancer response to therapy by modulating the tumor microenvironment. |
| Q49742899 | Common module analysis reveals prospective targets and mechanisms of pediatric adrenocortical adenoma and carcinoma. |
| Q28533985 | Community Structure Analysis of Gene Interaction Networks in Duchenne Muscular Dystrophy |
| Q35154990 | Community-based network study of protein-carbohydrate interactions in plant lectins using glycan array data |
| Q30842579 | Comparative Analysis of Glycogene Expression in Different Mouse Tissues Using RNA-Seq Data |
| Q92757268 | Comparative Analysis of the Liver Transcriptome among Cattle Breeds Using RNA-seq |
| Q92783582 | Comparative Identification of MicroRNAs in Apis cerana cerana Workers' Midguts in Responseto Nosema ceranae Invasion |
| Q97883407 | Comparative Microbiome Analysis Reveals the Ecological Relationships Between Rumen Methanogens, Acetogens, and Their Hosts |
| Q36696710 | Comparative Proteomic Analysis of Advanced Ovarian Cancer Tissue to Identify Potential Biomarkers of Responders and Nonresponders to First-Line Chemotherapy of Carboplatin and Paclitaxel |
| Q59808628 | Comparative Transcriptomics of Rat and Axolotl After Spinal Cord Injury Dissects Differences and Similarities in Inflammatory and Matrix Remodeling Gene Expression Patterns |
| Q42842591 | Comparative analysis of differential network modularity in tissue specific normal and cancer protein interaction networks |
| Q34748265 | Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa |
| Q28273778 | Comparative chemogenomics to examine the mechanism of action of dna-targeted platinum-acridine anticancer agents |
| Q38001459 | Comparative co-expression analysis in plant biology |
| Q34990609 | Comparative computational analysis of pluripotency in human and mouse stem cells. |
| Q35048371 | Comparative genome analysis of Megasphaera sp. reveals niche specialization and its potential role in the human gut |
| Q90671793 | Comparative genomic investigation of high-elevation adaptation in ectothermic snakes |
| Q34079190 | Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions |
| Q44845313 | Comparative genomics of mammalian hibernators using gene networks. |
| Q33914800 | Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks |
| Q34411948 | Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis. |
| Q64448536 | Comparative metatranscriptomics reveals extracellular electron transfer pathways conferring microbial adaptivity to surface redox potential changes |
| Q41811808 | Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions |
| Q37289426 | Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection |
| Q34325821 | Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana. |
| Q91582217 | Comparative transcriptome analysis of pigeonpea, Cajanus cajan (L.) and one of its wild relatives Cajanus platycarpus (Benth.) Maesen |
| Q55385529 | Comparative transcriptome analysis to investigate the potential role of miRNAs in milk protein/fat quality. |
| Q64067966 | Comparative transcriptome analysis uncovers the regulatory functions of long noncoding RNAs in fruit development and color changes of |
| Q92526886 | Comparing time series transcriptome data between plants using a network module finding algorithm |
| Q35683301 | Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules |
| Q36688846 | Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes. |
| Q38476865 | Comparison of reprogramming genes in induced pluripotent stem cells and nuclear transfer cloned embryos |
| Q40836533 | Comparison of topological clustering within protein networks using edge metrics that evaluate full sequence, full structure, and active site microenvironment similarity |
| Q30486230 | Comparison of ultra-fast 2D and 3D ligand and target descriptors for side effect prediction and network analysis in polypharmacology. |
| Q35878713 | Comparisons of diazotrophic communities in native and agricultural desert ecosystems reveal plants as important drivers in diversity |
| Q35778357 | Competition-cooperation relationship networks characterize the competition and cooperation between proteins |
| Q41840894 | Complete Genome Sequence of Actinobaculum schaalii Strain CCUG 27420. |
| Q42874067 | Complete Genome Sequence of Pseudomonas sp. UK4, a Model Organism for Studies of Functional Amyloids in Pseudomonas |
| Q40076383 | Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation |
| Q40076419 | Complete Genome of Rhodococcus pyridinivorans SB3094, a Methyl-Ethyl-Ketone-Degrading Bacterium Used for Bioaugmentation |
| Q38973070 | Complete genome sequence of Menghai flavivirus, a novel insect-specific flavivirus from China |
| Q39079441 | Complete genome sequence of Menghai rhabdovirus, a novel mosquito-borne rhabdovirus from China |
| Q40746350 | Complete genome sequence of Xishuangbanna flavivirus, a novel mosquito-specific flavivirus from China. |
| Q90290566 | Comprehensive Analysis of BAP1 Somatic Mutation in Clear Cell Renal Cell Carcinoma to Explore Potential Mechanisms in Silico |
| Q35746769 | Comprehensive analysis of gene-expression profile in chronic obstructive pulmonary disease |
| Q99629833 | Comprehensive analysis of key genes associated with ceRNA networks in nasopharyngeal carcinoma based on bioinformatics analysis |
| Q34773696 | Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing |
| Q94552561 | Comprehensive analysis of the long non-coding RNA-associated competitive endogenous RNA network reveals novel prognostic biomarkers in Wilms' tumor |
| Q39030149 | Comprehensive analysis of β-catenin target genes in colorectal carcinoma cell lines with deregulated Wnt/β-catenin signaling |
| Q99707872 | Comprehensive analysis on the expression levels and prognostic values of LOX family genes in kidney renal clear cell carcinoma |
| Q36663972 | Comprehensive computational analysis of bacterial CRP/FNR superfamily and its target motifs reveals stepwise evolution of transcriptional networks. |
| Q38624501 | Comprehensive epigenetic analysis of the signature genes in lung adenocarcinoma |
| Q89099943 | Comprehensive evaluation of differential lncRNA and gene expression in patients with intervertebral disc degeneration |
| Q56965879 | Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases |
| Q40598612 | Comprehensive proteomics analysis reveals new substrates and regulators of the fission yeast clp1/cdc14 phosphatase |
| Q114868297 | Computational Metabolomics Tools Reveal Metabolic Reconfigurations Underlying the Effects of Biostimulant Seaweed Extracts on Maize Plants under Drought Stress Conditions |
| Q41850322 | Computational Prediction of Protein-Protein Interaction Networks: Algo-rithms and Resources |
| Q38448065 | Computational analyses of type 2 diabetes-associated loci identified by genome-wide association studies |
| Q28654886 | Computational approaches for microalgal biofuel optimization: a review |
| Q44398195 | Computational construction of specialized biological networks |
| Q30885974 | Computational deconvolution of genome wide expression data from Parkinson's and Huntington's disease brain tissues using population-specific expression analysis |
| Q30278668 | Computational drug repositioning for peripheral arterial disease: prediction of anti-inflammatory and pro-angiogenic therapeutics |
| Q37184278 | Computational framework for analysis of prey-prey associations in interaction proteomics identifies novel human protein-protein interactions and networks |
| Q47099635 | Computational identification of microRNAs and their targets in liver cirrhosis |
| Q64988383 | Computational identification of protein-protein interactions in model plant proteomes. |
| Q34155176 | Computational identification of surrogate genes for prostate cancer phases using machine learning and molecular network analysis |
| Q41891818 | Computational pharmacological comparison of Salvia miltiorrhiza and Panax notoginseng used in the therapy of cardiovascular diseases |
| Q34695269 | Computational prediction of protein interactions related to the invasion of erythrocytes by malarial parasites |
| Q28484265 | Computational prediction of protein-protein interactions in Leishmania predicted proteomes |
| Q38010422 | Computational systems biology and in silico modeling of the human microbiome |
| Q38201036 | Computational tools for the secondary analysis of metabolomics experiments |
| Q37483918 | Concordance between somatic copy number loss and down-regulated expression: A pan-cancer study of cancer predisposition genes. |
| Q36111351 | Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study |
| Q35171528 | Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks |
| Q91936043 | Connection the Rhizomicrobiome and Plant MAPK Gene Expression Response to Pathogenic Fusarium oxysporum in Wild and Cultivated Soybean |
| Q37157377 | Consequences of domain insertion on sequence-structure divergence in a superfold |
| Q34382422 | Conservation of gene cassettes among diverse viruses of the human gut. |
| Q92404637 | Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products |
| Q38487543 | Constitutively elevated salicylic acid levels alter photosynthesis and oxidative state but not growth in transgenic populus |
| Q47122009 | Constructing an ovarian cancer metastasis index by dissecting medical records |
| Q34778053 | Constructing higher-order miRNA-mRNA interaction networks in prostate cancer via hypergraph-based learning |
| Q38736165 | Constructing module maps for integrated analysis of heterogeneous biological networks |
| Q36320724 | Constructing the angiome: a global angiogenesis protein interaction network |
| Q36164575 | Construction and Analysis of Functional Networks in the Gut Microbiome of Type 2 Diabetes Patients |
| Q33722354 | Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton |
| Q47173515 | Construction of a 26‑feature gene support vector machine classifier for smoking and non‑smoking lung adenocarcinoma sample classification |
| Q41655578 | Construction of a genome-scale metabolic network of the plant pathogen Pectobacterium carotovorum provides new strategies for bactericide discovery |
| Q47108319 | Construction of an miRNA-Regulated Pathway Network Reveals Candidate Biomarkers for Postmenopausal Osteoporosis |
| Q37711931 | Construction of an miRNA-regulated drug-pathway network reveals drug repurposing candidates for myasthenia gravis |
| Q39181696 | Construction of breast cancer gene regulatory networks and drug target optimization |
| Q31011674 | Construction of citrus gene coexpression networks from microarray data using random matrix theory |
| Q64064477 | Construction of lncRNA-mediated ceRNA network to reveal clinically relevant lncRNA biomarkers in glioblastomas |
| Q30487761 | Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system |
| Q30643664 | Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint |
| Q36658489 | Contextualizing the Genes Altered in Bladder Neoplasms in Pediatric andTeen Patients Allows Identifying Two Main Classes of Biological ProcessesInvolved and New Potential Therapeutic Targets |
| Q58084563 | Contrasts between the cryoconite and ice-marginal bacterial communities of Svalbard glaciers |
| Q28548555 | Control of Neuronal Network in Caenorhabditis elegans |
| Q35887331 | Coordination of the transcriptome and metabolome by the circadian clock |
| Q33870659 | Copy number alteration of neuropeptides and receptors in multiple cancers. |
| Q34098195 | Correlation network analysis applied to complex biofilm communities |
| Q36296443 | Correlation of aquaporins and transmembrane solute transporters revealed by genome-wide analysis in developing maize leaf |
| Q62575961 | Coupled Mutations-Enabled Glycerol Transportation in an Aquaporin Z Mutant |
| Q28492136 | Covalent docking predicts substrates for haloalkanoate dehalogenase superfamily phosphatases |
| Q35635287 | Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes |
| Q59349707 | Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection |
| Q57751746 | Crystal structure of AdoMet radical enzyme 7-carboxy-7-deazaguanine synthase from Escherichia coli suggests how modifications near [4Fe-4S] cluster engender flavodoxin specificity |
| Q36259785 | CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines. |
| Q34549678 | CySBGN: a Cytoscape plug-in to integrate SBGN maps |
| Q27987806 | CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis |
| Q54957773 | Cyanobacterial Community Composition and Bacteria-Bacteria Interactions Promote the Stable Occurrence of Particle-Associated Bacteria. |
| Q38390303 | Cyrface: An interface from Cytoscape to R that provides a user interface to R packages. |
| Q34269466 | CytoITMprobe: a network information flow plugin for Cytoscape. |
| Q47756564 | CytoMCS: A Multiple Maximum Common Subgraph Detection Tool for Cytoscape. |
| Q34161898 | CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores |
| Q37217699 | Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome |
| Q35529162 | Cytoscape tools for the web age: D3.js and Cytoscape.js exporters |
| Q98577413 | D-graph clusters flaviviruses and β-coronaviruses according to their hosts, disease type and human cell receptors |
| Q35787474 | DAPPER: a data-mining resource for protein-protein interactions |
| Q34530112 | DAZL limits pluripotency, differentiation, and apoptosis in developing primordial germ cells |
| Q38496554 | DEFOG: discrete enrichment of functionally organized genes |
| Q34896129 | DNA copy number evolution in Drosophila cell lines |
| Q96135294 | DNA methylation profiling to predict overall survival risk in gastric cancer: development and validation of a nomogram to optimize clinical management |
| Q37050340 | DNA methylation signature of human fetal alcohol spectrum disorder. |
| Q41135502 | DNA polymerase β deficiency is linked to aggressive breast cancer: a comprehensive analysis of gene copy number, mRNA and protein expression in multiple cohorts |
| Q34383264 | DTome: a web-based tool for drug-target interactome construction |
| Q26785948 | Data integration in biological research: an overview |
| Q34207728 | Data mining the human gut microbiota for therapeutic targets |
| Q31150564 | Data on evolution of intrinsically disordered regions of the human kinome and contribution of FAK1 IDRs to cytoskeletal remodeling |
| Q58697012 | Data-Driven Exploration of Selectivity and Off-Target Activities of Designated Chemical Probes |
| Q34967840 | Database screening of herbal monomers regulating autophagy by constructing a "disease-gene-drug" network |
| Q38922006 | Databases and tools for constructing signal transduction networks in cancer |
| Q35711447 | De Novo Assembly of the Donkey White Blood Cell Transcriptome and a Comparative Analysis of Phenotype-Associated Genes between Donkeys and Horses |
| Q35643223 | De novo transcriptome characterization and gene expression profiling of the desiccation tolerant moss Bryum argenteum following rehydration |
| Q41257473 | De-repression of myelin-regulating gene expression after status epilepticus in mice lacking the C/EBP homologous protein CHOP |
| Q35190282 | Decellularized allogeneic heart valves demonstrate self-regeneration potential after a long-term preclinical evaluation |
| Q35761232 | Deciphering Cis-Regulatory Element Mediated Combinatorial Regulation in Rice under Blast Infected Condition |
| Q28548411 | Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action |
| Q90446809 | Deciphering the Active Compounds and Mechanisms of Qixuehe Capsule on Qi Stagnation and Blood Stasis Syndrome: A Network Pharmacology Study |
| Q94560892 | Deciphering the Pharmacological Mechanisms of Taohe-Chengqi Decoction Extract Against Renal Fibrosis Through Integrating Network Pharmacology and Experimental Validation In Vitro and In Vivo |
| Q38741612 | Deciphering the cross-talking of human competitive endogenous RNAs in K562 chronic myelogenous leukemia cell line |
| Q36123951 | Deciphering the therapeutic mechanisms of Xiao-Ke-An in treatment of type 2 diabetes in mice by a Fangjiomics approach |
| Q35727984 | Deciphering the underlying mechanisms of Diesun Miaofang in traumatic injury from a systems pharmacology perspective |
| Q30660201 | Deducing the stage of origin of Wilms' tumours from a developmental series of Wt1-mutant mice |
| Q35971891 | Deep Sequence Analysis of Non-Small Cell Lung Cancer: Integrated Analysis of Gene Expression, Alternative Splicing, and Single Nucleotide Variations in Lung Adenocarcinomas with and without Oncogenic KRAS Mutations |
| Q57179122 | Deep Sequencing of Small RNAs in Blood of Patients with Brain Arteriovenous Malformations |
| Q33728879 | Deep interactome profiling of membrane proteins by co-interacting protein identification technology |
| Q46173902 | Deep sequencing and comprehensive expression analysis identifies several molecules potentially related to human poorly differentiated hepatocellular carcinoma |
| Q47802031 | Defining Electron Bifurcation in the Electron-Transferring Flavoprotein Family. |
| Q38444703 | Defining the Protein-Protein Interaction Network of the Human Protein Tyrosine Phosphatase Family |
| Q34685636 | Defining the genomic signature of totipotency and pluripotency during early human development |
| Q38910230 | Defining the phospho-adhesome through the phosphoproteomic analysis of integrin signalling |
| Q38442979 | Defining the protein-protein interaction network of the human hippo pathway |
| Q47165163 | Dengue virus causes changes of MicroRNA-genes regulatory network revealing potential targets for antiviral drugs |
| Q48230088 | Design of a tripartite network for the prediction of drug targets |
| Q47948028 | Detecting gene subnetworks under selection in biological pathways |
| Q34396793 | Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study |
| Q92236987 | Detecting overlapping protein complexes in weighted PPI network based on overlay network chain in quotient space |
| Q51136126 | Detecting protein complexes based on relevancy from protein interaction networks. |
| Q34560037 | Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion. |
| Q33630339 | Detection and comparison of microRNAs in the caprine mammary gland tissues of colostrum and common milk stages |
| Q35304069 | Detection of convergent genome-wide signals of adaptation to tropical forests in humans |
| Q37054691 | Detection of differentially methylated gene promoters in failing and nonfailing human left ventricle myocardium using computation analysis. |
| Q30874310 | Detection of pleiotropy through a Phenome-wide association study (PheWAS) of epidemiologic data as part of the Environmental Architecture for Genes Linked to Environment (EAGLE) study |
| Q58576046 | Determinants of the urinary and serum metabolome in children from six European populations |
| Q92844927 | Determination of the Gene Regulatory Network of a Genome-Reduced Bacterium Highlights Alternative Regulation Independent of Transcription Factors |
| Q93016263 | Developing a virus-microRNA interactome using cytoscape |
| Q92132610 | Development of a Bioinformatics Framework for Identification and Validation of Genomic Biomarkers and Key Immunopathology Processes and Controllers in Infectious and Non-infectious Severe Inflammatory Response Syndrome |
| Q101038887 | Development of a novel immune-related genes prognostic signature for osteosarcoma |
| Q34487377 | Development of antibiotic activity profile screening for the classification and discovery of natural product antibiotics. |
| Q27320081 | Developmental self-construction and -configuration of functional neocortical neuronal networks |
| Q27314804 | Dietary protein affects gene expression and prevents lipid accumulation in the liver in mice |
| Q28603345 | Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides |
| Q88514833 | Differential circular RNAs expression in ovary during oviposition in honey bees |
| Q33890351 | Differential co-expression analysis reveals a novel prognostic gene module in ovarian cancer |
| Q33799490 | Differential effects of a post-anthesis heat stress on wheat (Triticum aestivum L.) grain proteome determined by iTRAQ. |
| Q52372053 | Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia. |
| Q37624840 | Differential impact of cumulative SES risk on methylation of protein-protein interaction pathways as a function of SLC6A4 genetic variation in African American young adults |
| Q92347954 | Differential network analysis and protein-protein interaction study reveals active protein modules in glucocorticoid resistance for infant acute lymphoblastic leukemia |
| Q36682166 | Differential network analysis reveals the genome-wide landscape of estrogen receptor modulation in hormonal cancers |
| Q35051486 | Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment |
| Q34765669 | Differential response of the cynomolgus macaque gut microbiota to Shigella infection |
| Q42918071 | Differential stress transcriptome landscape of historic and recently emerged hypervirulent strains of Clostridium difficile strains determined using RNA-seq |
| Q92064890 | Differentiation of H. pylori-negative and positive gastric cancer via regulatory network analysis |
| Q28544472 | Direct detection of fungal siderophores on bats with white-nose syndrome via fluorescence microscopy-guided ambient ionization mass spectrometry |
| Q47561443 | Discovering Altered Regulation and Signaling Through Network-based Integration of Transcriptomic, Epigenomic, and Proteomic Tumor Data. |
| Q36525241 | Discovery of an L-fucono-1,5-lactonase from cog3618 of the amidohydrolase superfamily |
| Q43823642 | Discovery of an integrative network of microRNAs and transcriptomics changes for acute kidney injury |
| Q58774660 | Discovery of cationic nonribosomal peptides as Gram-negative antibiotics through global genome mining |
| Q35570011 | Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis |
| Q34171039 | Discovery of intramolecular signal transduction network based on a new protein dynamics model of energy dissipation |
| Q37248117 | Discovery of novel xylosides in co-culture of basidiomycetes Trametes versicolor and Ganoderma applanatum by integrated metabolomics and bioinformatics |
| Q39048969 | Discovery of the neuroprotective effects of alvespimycin by computational prioritization of potential anti-Parkinson agents |
| Q90324071 | Disease outbreak accompanies the dispersive structure of shrimp gut bacterial community with a simple core microbiota |
| Q36209899 | Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress |
| Q34221722 | Dissecting DNA repair in adult high grade gliomas for patient stratification in the post-genomic era. |
| Q35772557 | Dissecting Germ Cell Metabolism through Network Modeling |
| Q34552423 | Dissecting the human protein-protein interaction network via phylogenetic decomposition |
| Q90149683 | Dissection of Pharmacological Mechanism of Chinese Herbal Medicine Yihuo Huatan Formula on Chronic Obstructive Pulmonary Disease: A Systems Pharmacology-Based Study |
| Q34988888 | Dissection of miRNA-miRNA interaction in esophageal squamous cell carcinoma |
| Q34730277 | Dissection of protein interactomics highlights microRNA synergy |
| Q34338262 | Dissolved organic carbon influences microbial community composition and diversity in managed aquifer recharge systems |
| Q37155533 | Distinct E-cadherin-based complexes regulate cell behaviour through miRNA processing or Src and p120 catenin activity |
| Q38439272 | Distinct hepatitis B virus integration patterns in hepatocellular carcinoma and adjacent normal liver tissue |
| Q37157483 | Distinct interacting core taxa in co-occurrence networks enable discrimination of polymicrobial oral diseases with similar symptoms. |
| Q42227955 | Distinct regulation of tonsillar immune response in virus infection |
| Q34316743 | Distribution of events of positive selection and population differentiation in a metabolic pathway: the case of asparagine N-glycosylation |
| Q64084690 | Diurnal Temperature Variation and Plants Drive Latitudinal Patterns in Seasonal Dynamics of Soil Microbial Community |
| Q91151582 | Divergence in Transcriptional and Regulatory Responses to Mating in Male and Female Fruitflies |
| Q92360919 | Divergent gene expression networks underlie morphological diversity of abscission zones in grasses |
| Q34283098 | Diverse CRISPRs evolving in human microbiomes. |
| Q35366647 | Diversity and dynamics of bacteriocins from human microbiome |
| Q36216342 | Diversity and structure of soil bacterial communities in the Fildes Region (maritime Antarctica) as revealed by 454 pyrosequencing |
| Q38999178 | Dominant-negative Ikaros cooperates with BCR-ABL1 to induce human acute myeloid leukemia in xenografts |
| Q34917305 | Draft Genome Sequence of Sphingomonas sp. Strain Ant20, Isolated from Oil-Contaminated Soil on Ross Island, Antarctica |
| Q92356395 | Draft genome and description of Merdibacter massiliensis gen.nov., sp. nov., a new bacterium genus isolated from the human ileum |
| Q33650989 | Drebrin restricts rotavirus entry by inhibiting dynamin-mediated endocytosis. |
| Q60046535 | Drivers and assemblies of soil eukaryotic microbes among different soil habitat types in a semi-arid mountain in China |
| Q31061494 | Drought and Recovery: Independently Regulated Processes Highlighting the Importance of Protein Turnover Dynamics and Translational Regulation in Medicago truncatula. |
| Q38434869 | Drug repositioning by applying 'expression profiles' generated by integrating chemical structure similarity and gene semantic similarity. |
| Q44780112 | Drug repurposing based on drug-drug interaction |
| Q36814771 | Drug target identification using network analysis: Taking active components in Sini decoction as an example |
| Q54309191 | Dynamic activation of the key pathways: linking colitis to colorectal cancer in a mouse model. |
| Q36536292 | Dynamic changes in global microRNAome and transcriptome reveal complex miRNA-mRNA regulated host response to Japanese Encephalitis Virus in microglial cells |
| Q35111091 | Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis |
| Q64104501 | Dynamic molecular changes during the first week of human life follow a robust developmental trajectory |
| Q41383302 | Dynamic transcriptional signatures and network responses for clinical symptoms in influenza-infected human subjects using systems biology approaches |
| Q42256986 | Dynamic transitions in RNA polymerase II density profiles during transcription termination |
| Q34450213 | Dynamical modeling of the cell cycle and cell fate emergence in Caulobacter crescentus. |
| Q37335359 | Dynamics of the Saccharomyces cerevisiae transcriptome during bread dough fermentation. |
| Q37417575 | Dysregulation of Npas2 leads to altered metabolic pathways in a murine knockout model |
| Q44717757 | Dystrophin-deficient pigs provide new insights into the hierarchy of physiological derangements of dystrophic muscle |
| Q37344028 | ECGene: A Literature-Based Knowledgebase of Endometrial Cancer Genes |
| Q44428167 | EDENetworks: a user-friendly software to build and analyse networks in biogeography, ecology and population genetics |
| Q64948860 | EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. |
| Q34809646 | EGN: a wizard for construction of gene and genome similarity networks |
| Q36256649 | ESRP2 controls an adult splicing programme in hepatocytes to support postnatal liver maturation. |
| Q36145819 | ETAscape: analyzing protein networks to predict enzymatic function and substrates in Cytoscape |
| Q39025801 | Early differences in islets from prediabetic NOD mice: combined microarray and proteomic analysis |
| Q28395627 | Early downregulation of Mcl-1 regulates apoptosis triggered by cardiac glycoside UNBS1450 |
| Q33773793 | Early-life environmental variation affects intestinal microbiota and immune development in new-born piglets |
| Q35620149 | Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations |
| Q34629267 | Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes |
| Q46267301 | Ecological Patterns Among Bacteria and Microbial Eukaryotes Derived from Network Analyses in a Low-Salinity Lake |
| Q47318772 | Effect of Dietary Forage to Concentrate Ratios on Dynamic Profile Changes and Interactions of Ruminal Microbiota and Metabolites in Holstein Heifers |
| Q94475220 | Effect of oxLDL on transcriptional expression of human lens epithelial cells |
| Q41109234 | Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments |
| Q37575685 | Effect of summer daylight exposure and genetic background on growth in growth hormone-deficient children |
| Q48010870 | Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria |
| Q37219293 | Effects of aging on human leukocytes (part II): immunophenotyping of adaptive immune B and T cell subsets |
| Q37239924 | Effects of chronic NMDA-NR2b inhibition in the median eminence of the reproductive senescent female rat. |
| Q38008445 | Effects of environmental stressors on histone modifications and their relevance to carcinogenesis: a systematic review. |
| Q35180091 | Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach |
| Q90783280 | Effects of natural vegetative restoration on soil fungal and bacterial communities in bare patches of the southern Taihang Mountains |
| Q34622940 | Effects of smoking and smoking cessation on human serum metabolite profile: results from the KORA cohort study |
| Q94548118 | Effects of α-Mangostin Derivatives on the Alzheimer's Disease Model of Rats and Their Mechanism: A Combination of Experimental Study and Computational Systems Pharmacology Analysis |
| Q41895291 | Elevated IQGAP1 and CDC42 levels correlate with tumor malignancy of human glioma |
| Q47716342 | Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database. |
| Q42599269 | Elucidating human phosphatase-substrate networks |
| Q28115639 | Elucidating novel hepatitis C virus-host interactions using combined mass spectrometry and functional genomics approaches |
| Q49885337 | Elucidating the gene regulatory networks modulating cancer stem cells and non-stem cancer cells in high grade serous ovarian cancer. |
| Q28551971 | Elucidation of the Mode of Action of a New Antibacterial Compound Active against Staphylococcus aureus and Pseudomonas aeruginosa |
| Q35198773 | Elucidation of the evolutionary expansion of phosphorylation signaling networks using comparative phosphomotif analysis |
| Q88061243 | Encoding of contextual fear memory requires de novo proteins in the prelimbic cortex |
| Q33597853 | EndoNet: an information resource about the intercellular signaling network |
| Q41202130 | Enhancement of Environmental Hazard Degradation in the Presence of Lignin: a Proteomics Study |
| Q55284198 | Epigenetic machine learning: utilizing DNA methylation patterns to predict spastic cerebral palsy. |
| Q36131514 | Epistatic Gene-Based Interaction Analyses for Glaucoma in eMERGE and NEIGHBOR Consortium |
| Q35067547 | Epistatic effects on abdominal fat content in chickens: results from a genome-wide SNP-SNP interaction analysis |
| Q41745576 | Epstein-Barr virus encoded microRNAs target SUMO-regulated cellular functions |
| Q30990372 | Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways |
| Q55019731 | Essential genes of the macrophage response to Staphylococcus aureus exposure. |
| Q36397942 | Estrogen receptor prevents p53-dependent apoptosis in breast cancer |
| Q37683845 | Ethylene-induced transcriptional and hormonal responses at the onset of sugarcane ripening. |
| Q34258968 | Ets-1 global gene expression profile reveals associations with metabolism and oxidative stress in ovarian and breast cancers |
| Q24629019 | Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function |
| Q35744557 | Evaluating the antidiabetic effects of Chinese herbal medicine: Xiao-Ke-An in 3T3-L1 cells and KKAy mice using both conventional and holistic omics approaches |
| Q35687526 | Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm. |
| Q57480295 | Evaluation of Serum Apolipoprotein E as a Potential Biomarker for Pharmacological Therapeutic Efficacy Monitoring in Dopamine Dictated Disease Spectrum of Schizophrenia and Parkinson's disease: A Preliminary Study |
| Q27027301 | Evaluation of database-derived pathway development for enabling biomarker discovery for hepatotoxicity |
| Q92425143 | Evaluation of dynamic developmental processes and the molecular basis of the high body fat percentage of different proglottid types of Moniezia expansa |
| Q92603890 | Evaluation of α-synuclein and apolipoprotein E as potential biomarkers in cerebrospinal fluid to monitor pharmacotherapeutic efficacy in dopamine dictated disease states of Parkinson's disease and schizophrenia |
| Q45718642 | Evidence for polygenic adaptation to pathogens in the human genome |
| Q36168186 | Evidence of bacterioplankton community adaptation in response to long-term mariculture disturbance |
| Q41637558 | EvoTol: a protein-sequence based evolutionary intolerance framework for disease-gene prioritization |
| Q58112974 | Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors |
| Q35769392 | Evolution of a Novel Antiviral Immune-Signaling Interaction by Partial-Gene Duplication. |
| Q30276039 | Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants |
| Q34154689 | Evolution of functional diversification within quasispecies |
| Q35873369 | Evolution of metabolic divergence in Pseudomonas aeruginosa during long-term infection facilitates a proto-cooperative interspecies interaction |
| Q42290576 | Evolutionary Analysis of DELLA-Associated Transcriptional Networks. |
| Q64992003 | Evolutionary Divergence of Duplicated Hsf Genes in Populus. |
| Q46502809 | Evolutionary analysis of the global landscape of protein domain types and domain architectures associated with family 14 carbohydrate-binding modules |
| Q37255749 | Evolutionary pressure on the topology of protein interface interaction networks |
| Q37633388 | Evolvix BEST Names for semantic reproducibility across code2brain interfaces. |
| Q91756088 | Examining the biomarkers and molecular mechanisms of medulloblastoma based on bioinformatics analysis |
| Q38769007 | Examining the social context of injection drug use: social proximity vs. geographic proximity to others who inject drugs |
| Q64280961 | Exome-wide search and functional annotation of genes associated in patients with severe tick-borne encephalitis in a Russian population |
| Q36279008 | Exosome Secretion by the Parasitic Protozoan Leishmania within the Sand Fly Midgut |
| Q39967880 | Exosomes Secreted by Apoptosis-Resistant Acute Myeloid Leukemia (AML) Blasts Harbor Regulatory Network Proteins Potentially Involved in Antagonism of Apoptosis |
| Q47308214 | Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families. |
| Q34521630 | Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3. |
| Q28691691 | Experimental evolution of protein-protein interaction networks |
| Q40535762 | Experimental validation of in silico model-predicted isocitrate dehydrogenase and phosphomannose isomerase from Dehalococcoides mccartyi |
| Q38102667 | Explaining microbial phenotypes on a genomic scale: GWAS for microbes |
| Q35975074 | Exploiting ontology graph for predicting sparsely annotated gene function |
| Q48294441 | Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield. |
| Q54962616 | Exploration of the molecular mechanisms of cervical cancer based on mRNA expression profiles and predicted microRNA interactions. |
| Q46768036 | Exploring Actinobacteria assemblages in coastal marine sediments under contrasted Human influences in the West Istria Sea, Croatia |
| Q33987719 | Exploring and exploiting disease interactions from multi-relational gene and phenotype networks. |
| Q49888739 | Exploring autophagy with Gene Ontology. |
| Q35051482 | Exploring drug-target interaction networks of illicit drugs |
| Q89210163 | Exploring mechanisms of Panax notoginseng saponins in treating coronary heart disease by integrating gene interaction network and functional enrichment analysis |
| Q35823177 | Exploring systems affected by the heat shock response in Plasmodium falciparum via protein association networks |
| Q89521250 | Exploring the Key Genes and Pathways in the Formation of Corneal Scar Using Bioinformatics Analysis |
| Q92219419 | Exploring the Pharmacological Mechanism of the Herb Pair "HuangLian-GanJiang" against Colorectal Cancer Based on Network Pharmacology |
| Q38086129 | Exploring the multifactorial nature of autism through computational systems biology: calcium and the Rho GTPase RAC1 under the spotlight |
| Q54963521 | Expression Profiling Analysis Reveals Key MicroRNA-mRNA Interactions in Early Retinal Degeneration in Retinitis Pigmentosa. |
| Q92382658 | Expression and function of long non-coding RNA LINC01420 in thyroid cancer |
| Q37269411 | Expression of epithelial-mesenchymal transition-related genes increases with copy number in multiple cancer types. |
| Q36601006 | Expression of microRNAs in human post-mortem amyotrophic lateral sclerosis spinal cords provides insight into disease mechanisms |
| Q36593659 | Expression profile analysis of long noncoding RNA in HER-2-enriched subtype breast cancer by next-generation sequencing and bioinformatics |
| Q92623615 | Expression profiles and potential functions of long non-coding RNA in stable angina pectoris patients from Uyghur population of China |
| Q35559858 | Expression profiling of preadipocyte microRNAs by deep sequencing on chicken lines divergently selected for abdominal fatness |
| Q35180026 | Expression-based network biology identifies immune-related functional modules involved in plant defense |
| Q24338239 | Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix |
| Q30700523 | Extensive tRNA gene changes in synthetic Brassica napus |
| Q42848331 | Extracting patterns of database and software usage from the bioinformatics literature |
| Q30542173 | FAM123A binds to microtubules and inhibits the guanine nucleotide exchange factor ARHGEF2 to decrease actomyosin contractility |
| Q64895068 | FN1, SPARC, and SERPINE1 are highly expressed and significantly related to a poor prognosis of gastric adenocarcinoma revealed by microarray and bioinformatics. |
| Q37097265 | FOXR2 Interacts with MYC to Promote Its Transcriptional Activities and Tumorigenesis |
| Q34374361 | FT-ICR/MS and GC-EI/MS metabolomics networking unravels global potato sprout's responses to Rhizoctonia solani infection |
| Q37160741 | Factors associated with needle sharing among people who inject drugs in Yunnan, China: a combined network and regression analysis |
| Q37724017 | Family-based analysis identified CD2 as a susceptibility gene for primary open angle glaucoma in Chinese Han population |
| Q46056104 | Fe sparing and Fe recycling contribute to increased superoxide dismutase capacity in iron-starved Chlamydomonas reinhardtii |
| Q50068159 | Feature genes in metastatic breast cancer identified by MetaDE and SVM classifier methods. |
| Q35894828 | Feeding cessation alters host morphology and bacterial communities in the ascidian Pseudodistoma crucigaster. |
| Q39385317 | Fenfluramine-induced gene dysregulation in human pulmonary artery smooth muscle and endothelial cells |
| Q47285409 | Fibroblasts Promote Inflammation and Pain via Interleukin-1α-Induction of the Monocyte Chemoattractant CCL2. |
| Q39354792 | Finding lost genes in GWAS via integrative-omics analysis reveals novel sub-networks associated with preterm birth |
| Q55019491 | Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining. |
| Q24322184 | Fine-tuning BMP7 signalling in adipogenesis by UBE2O/E2-230K-mediated monoubiquitination of SMAD6 |
| Q41456267 | FlowerNet: a gene expression correlation network for anther and pollen development |
| Q40793564 | Follicular fluid alterations in endometriosis: label-free proteomics by MS(E) as a functional tool for endometriosis |
| Q30008906 | From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors |
| Q48363028 | From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. |
| Q28652633 | Fuelling genetic and metabolic exploration of C 3 bioenergy crops through the first reference transcriptome of Arundo donax L. |
| Q39992601 | FunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks |
| Q56932510 | Functional Network Pipeline Reveals Genetic Determinants Associated with in Situ Lymphocyte Proliferation and Survival of Cancer Patients |
| Q55324270 | Functional analysis of gene expression profiling-based prediction in bladder cancer. |
| Q37581786 | Functional analysis of keratinocyte and fibroblast gene expression in skin and keloid scar tissue based on deviation analysis of dynamic capabilities |
| Q34116857 | Functional analysis of the kinome of the wheat scab fungus Fusarium graminearum. |
| Q38297279 | Functional analysis of the nasopharyngeal carcinoma primary tumor‑associated gene interaction network |
| Q38438981 | Functional and Genomic Features of Human Genes Mutated in Neuropsychiatric Disorders |
| Q43241085 | Functional and protein‑protein interaction network analysis of colorectal cancer induced by ulcerative colitis |
| Q27322730 | Functional classification of memory CD8(+) T cells by CX3CR1 expression |
| Q48594399 | Functional features and protein network of human sperm-egg interaction. |
| Q30602943 | Functional genomic and phenotypic responses to desiccation in natural populations of a desert drosophilid |
| Q35445902 | Functional genomics of adaptation to hypoxic cold-stress in high-altitude deer mice: transcriptomic plasticity and thermogenic performance |
| Q38451584 | Functional genomics of candidate genes derived from genome-wide association studies for five common neurological diseases. |
| Q89657326 | Functional lncRNA-miRNA-mRNA networks in rabbit carotid atherosclerosis |
| Q37445053 | Functional metagenomic profiling of intestinal microbiome in extreme ageing |
| Q91671552 | Functional network analysis of gene-phenotype connectivity based on pioglitazone |
| Q41485482 | Functional phosphatome requirement for protein homeostasis, networked mitochondria, and sarcomere structure in C. elegans muscle |
| Q24633178 | Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription |
| Q36163466 | Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription. |
| Q34347568 | Functional screening for miRNAs targeting Smad4 identified miR-199a as a negative regulator of TGF-β signalling pathway. |
| Q35541366 | Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis |
| Q36180589 | Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology. |
| Q37437626 | Functional/activity network (FAN) analysis of gene-phenotype connectivity liaised by grape polyphenol resveratrol |
| Q35172168 | Fungal communities respond to long-term CO2 elevation by community reassembly |
| Q37061828 | Fungal genes in context: genome architecture reflects regulatory complexity and function |
| Q37376179 | GCGene: a gene resource for gastric cancer with literature evidence. |
| Q30847231 | GENIUS: web server to predict local gene networks and key genes for biological functions. |
| Q41854744 | GESTODIFFERENT: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process |
| Q110949554 | GRNsight: a web application and service for visualizing models of small- to medium-scale gene regulatory networks |
| Q27336073 | Game on, science - how video game technology may help biologists tackle visualization challenges |
| Q38685044 | GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis |
| Q33582113 | Gene Expression Profiling of the Optic Nerve Head of Patients with Primary Open-Angle Glaucoma |
| Q92539318 | Gene Expression Profiling of the Shoot Meristematic Tissues in Woodland Strawberry Fragaria vesca |
| Q90370226 | Gene alterations in monocytes are pathogenic factors for immunoglobulin a nephropathy by bioinformatics analysis of microarray data |
| Q33805188 | Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding |
| Q50718927 | Gene coexpression as Hebbian learning in prokaryotic genomes. |
| Q38471174 | Gene expression analyses to explore the biomarkers and therapeutic targets for gliomas |
| Q36161715 | Gene expression and metabolism preceding soft scald, a chilling injury of 'Honeycrisp' apple fruit |
| Q34583810 | Gene expression in whole lung and pulmonary macrophages reflects the dynamic pathology associated with airway surface dehydration |
| Q40081636 | Gene expression of OCT4, SOX2, KLF4 and MYC (OSKM) induced pluripotent stem cells: identification for potential mechanisms |
| Q40261452 | Gene expression profile after knockdown of USP18 in Hepg2.2.15 cells. |
| Q35444464 | Gene expression profile analysis of colorectal cancer to investigate potential mechanisms using bioinformatics |
| Q49628206 | Gene expression profile analysis of the bone microenvironment in patients with spinal metastases. |
| Q50047824 | Gene expression profile analysis of the progression of carotid atherosclerotic plaques. |
| Q46285198 | Gene expression profiles during short-term heat stress in the red sea coral Stylophora pistillata. |
| Q48835588 | Gene expression profiling analysis of locus coeruleus in idiopathic Parkinson's disease by bioinformatics. |
| Q37000933 | Gene expression profiling analysis of ovarian cancer |
| Q38459136 | Gene expression profiling predicts pathways and genes associated with Parkinson's disease |
| Q57793623 | Gene expression variability across cells and species shapes innate immunity |
| Q92374894 | Gene expression-based analysis identified NTNG1 and HGF as biomarkers for diabetic kidney disease |
| Q51272115 | Gene markers of fracture healing in early stage and the regulatory mechanism during the process using microarray analysis. |
| Q34446150 | Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease. |
| Q30705161 | Gene regulatory network modeling using literature curated and high throughput data |
| Q28728105 | Gene regulatory network modeling via global optimization of high-order dynamic Bayesian network |
| Q42115311 | Gene set enrichment and topological analyses based on interaction networks in pediatric acute lymphoblastic leukemia |
| Q42076777 | GeneNet Toolbox for MATLAB: a flexible platform for the analysis of gene connectivity in biological networks |
| Q29547401 | Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data |
| Q34308989 | Genes and signaling networks regulated during zebrafish optic vesicle morphogenesis |
| Q30359391 | Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets. |
| Q41455313 | Genes required for survival in microgravity revealed by genome-wide yeast deletion collections cultured during spaceflight |
| Q34984574 | Genes suppressed by DNA methylation in non-small cell lung cancer reveal the epigenetics of epithelial-mesenchymal transition |
| Q38716264 | Genetic and transcriptomic analyses of lignin- and lodging-related traits in Brassica napus. |
| Q33696772 | Genetic basis for the biosynthesis of the pharmaceutically important class of epoxyketone proteasome inhibitors. |
| Q28658083 | Genetic inhibition of hepatic acetyl-CoA carboxylase activity increases liver fat and alters global protein acetylation |
| Q36710655 | Genetic variants and their interactions in disease risk prediction - machine learning and network perspectives |
| Q35540091 | Genetic variation in the nuclear and organellar genomes modulates stochastic variation in the metabolome, growth, and defense |
| Q35607854 | Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci |
| Q33565363 | Genome scale modeling in systems biology: algorithms and resources |
| Q34346732 | Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes |
| Q91712083 | Genome-Wide Analysis of Circular RNAs Mediated ceRNA Regulation in Porcine Embryonic Muscle Development |
| Q39033913 | Genome-Wide Analysis of the Distinct Types of Chromatin Interactions in Arabidopsis thaliana |
| Q42211861 | Genome-Wide Analysis of the PvHsp20 Family in Switchgrass: Motif, Genomic Organization, and Identification of Stress or Developmental-Related Hsp20s |
| Q49181813 | Genome-Wide Methylation Patterns in Androgen-Independent Prostate Cancer Cells: A Comprehensive Analysis Combining MeDIP-Bisulfite, RNA, and microRNA Sequencing Data. |
| Q41158225 | Genome-Wide Scale-Free Network Inference for Candida albicans |
| Q41177904 | Genome-Wide Transcriptional Profiling to Elucidate Key Candidates Involved in Bud Burst and Rattling Growth in a Subtropical Bamboo (Dendrocalamus hamiltonii). |
| Q42441070 | Genome-wide 5-hydroxymethylcytosine modification pattern is a novel epigenetic feature of globozoospermia |
| Q64971243 | Genome-wide analysis identifies rare copy number variations associated with inflammatory bowel disease. |
| Q36740921 | Genome-wide analysis of LXRα activation reveals new transcriptional networks in human atherosclerotic foam cells |
| Q64067932 | Genome-wide analysis of long non-coding RNAs unveils the regulatory roles in the heat tolerance of Chinese cabbage (Brassica rapa ssp.chinensis) |
| Q36308841 | Genome-wide analysis of mir-548 gene family reveals evolutionary and functional implications |
| Q58695818 | Genome-wide analysis of root hair-preferential genes in rice |
| Q40911639 | Genome-wide association analysis and differential expression analysis of resistance to Sclerotinia stem rot in Brassica napus |
| Q37637724 | Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia |
| Q48042150 | Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels |
| Q90294393 | Genome-wide association study of maize plant architecture using F1 populations |
| Q64136167 | Genome-wide differential expression of long noncoding RNAs and mRNAs in ovarian follicles of two different chicken breeds |
| Q51188697 | Genome-wide exploration of silicon (Si) transporter genes, Lsi1 and Lsi2 in plants; insights into Si-accumulation status/capacity of plants. |
| Q38460728 | Genome-wide expression and methylation profiles reveal candidate genes and biological processes underlying synovial inflammatory tissue of patients with osteoarthritis |
| Q60959098 | Genome-wide functional analyses of plant coiled-coil NLR-type pathogen receptors reveal essential roles of their N-terminal domain in oligomerization, networking, and immunity |
| Q28595650 | Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans |
| Q58701420 | Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus) |
| Q52661618 | Genome-wide identification and characterization of Dof transcription factors in eggplant (Solanum melongena L.). |
| Q39544299 | Genome-wide identification and expression analysis of sulfate transporter (SULTR) genes in potato (Solanum tuberosum L.). |
| Q100408131 | Genome-wide interologous interactome map (TeaGPIN) of Camellia sinensis |
| Q30654005 | Genome-wide methylation study on depression: differential methylation and variable methylation in monozygotic twins |
| Q35891370 | Genome-wide mutational spectra analysis reveals significant cancer-specific heterogeneity |
| Q34916184 | Genome-wide single-cell-level screen for protein abundance and localization changes in response to DNA damage in S. cerevisiae. |
| Q50531142 | Genome-wide targets identification of "core" pluripotency transcription factors with integrated features in human embryonic stem cells. |
| Q35091848 | Genome-wide tissue-specific gene expression, co-expression and regulation of co-expressed genes in adult nematode Ascaris suum |
| Q35301939 | Genomic heterogeneity of osteosarcoma - shift from single candidates to functional modules |
| Q47555679 | Genomic islands of differentiation in two songbird species reveal candidate genes for hybrid female sterility. |
| Q34717421 | Genomic profiling of human Leishmania braziliensis lesions identifies transcriptional modules associated with cutaneous immunopathology |
| Q28727855 | Genomics and bioinformatics of Parkinson's disease |
| Q46678939 | Geological connectivity drives microbial community structure and connectivity in polar, terrestrial ecosystems. |
| Q40429780 | Glia-derived neurons are required for sex-specific learning in C. elegans |
| Q36745168 | Global Epitranscriptomics Profiling of RNA Post-Transcriptional Modifications as an Effective Tool for Investigating the Epitranscriptomics of Stress Response |
| Q92555567 | Global Genetic Networks and the Genotype-to-Phenotype Relationship |
| Q42241042 | Global Human-Kinase Screening Identifies Therapeutic Host Targets against Influenza. |
| Q37840078 | Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection |
| Q47438320 | Global Proteome Analysis Links Lysine Acetylation to Diverse Functions in Oryza Sativa |
| Q28486526 | Global analysis of the human pathophenotypic similarity gene network merges disease module components |
| Q34857146 | Global characterization of signalling networks associated with tamoxifen resistance in breast cancer. |
| Q39462405 | Global identification of modular cullin-RING ligase substrates |
| Q30668574 | Global mapping of herpesvirus-host protein complexes reveals a transcription strategy for late genes |
| Q36663328 | Global miRNA expression is temporally correlated with acute kidney injury in mice |
| Q98282969 | Global multi-omics and systems pharmacological strategy unravel the multi-targeted therapeutic potential of natural bioactive molecules against COVID-19: An in silico approach |
| Q55332100 | Global transcriptome analysis to identify critical genes involved in the pathology of osteoarthritis. |
| Q37020385 | Glucocorticoids suppress T cell function by up-regulating microRNA-98 |
| Q50434495 | Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum. |
| Q34700042 | Granulomatous response to Coxiella burnetii, the agent of Q fever: the lessons from gene expression analysis |
| Q42693806 | GraphSpace: stimulating interdisciplinary collaborations in network biology |
| Q37688372 | Graphite Web: Web tool for gene set analysis exploiting pathway topology |
| Q28646810 | Graphlet signature-based scoring method to estimate protein-ligand binding affinity |
| Q40592428 | Gut microbiome predictors of treatment response and recurrence in primary Clostridium difficile infection |
| Q35156911 | Gut microbiomes of Indian children of varying nutritional status |
| Q33805002 | HGPEC: a Cytoscape app for prediction of novel disease-gene and disease-disease associations and evidence collection based on a random walk on heterogeneous network |
| Q37060118 | HPIDB 2.0: a curated database for host-pathogen interactions |
| Q41932257 | Haploinsufficiency of Tumor Suppressor Genes is Driven by the Cumulative Effect of microRNAs, microRNA Binding Site Polymorphisms and microRNA Polymorphisms: An In silico Approach |
| Q35229251 | Hepatic transcriptomic profiling reveals early toxicological mechanisms of uranium in Atlantic salmon (Salmo salar) |
| Q35999440 | Hepatitis C Virus Protein Interaction Network Analysis Based on Hepatocellular Carcinoma |
| Q56360968 | Hepatitis C virus enters liver cells using the CD81 receptor complex proteins calpain-5 and CBLB |
| Q28817588 | Herb pair Danggui-Honghua: mechanisms underlying blood stasis syndrome by system pharmacology approach |
| Q47550353 | Herpesvirus deconjugases inhibit the IFN response by promoting TRIM25 autoubiquitination and functional inactivation of the RIG-I signalosome. |
| Q92663510 | Heterogeneous development of methanogens and the correlation with bacteria in the rumen and cecum of sika deer (Cervus nippon) during early life suggest different ecology relevance |
| Q45225920 | Hierarchical nuclear and cytoplasmic genetic architectures for plant growth and defense within Arabidopsis |
| Q49301622 | High expression of SMARCA4 or SMARCA2 is frequently associated with an opposite prognosis in cancer. |
| Q37306994 | High expression of new genes in trochophore enlightening the ontogeny and evolution of trochozoans |
| Q38468546 | High fidelity between saliva proteomics and the biologic state of salivary glands defines biomarker signatures for primary Sjögren's syndrome |
| Q38500985 | High frequency of rare copy number variants affecting functionally related genes in patients with structural brain malformations. |
| Q31028809 | High levels of heterogeneity in diazotroph diversity and activity within a putative hotspot for marine nitrogen fixation |
| Q36290162 | High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba). |
| Q98232407 | High throughput deep sequencing elucidates the important role of lncRNAs in Foxtail millet response to herbicides |
| Q37666760 | High-protein paternal diet confers an advantage to sons in sperm competition |
| Q35105750 | High-resolution profiling of stationary-phase survival reveals yeast longevity factors and their genetic interactions. |
| Q37036734 | High-throughput sequencing reveals principles of adeno-associated virus serotype 2 integration |
| Q37644024 | Highly divergent integration profile of adeno-associated virus serotype 5 revealed by high-throughput sequencing. |
| Q42778297 | Highly-interwoven communities of a gene regulatory network unveil topologically important genes for maize seed development. |
| Q23778306 | Homozygous loss of DIAPH1 is a novel cause of microcephaly in humans |
| Q29048161 | Horizontal and vertical growth of S. cerevisiae metabolic network |
| Q35675561 | Host-microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures. |
| Q34979339 | How microRNA and transcription factor co-regulatory networks affect osteosarcoma cell proliferation |
| Q35840893 | How well do the substrates KISS the enzyme? Molecular docking program selection for feruloyl esterases. |
| Q43633032 | Hsp90-downregulation influences the heat-shock response, innate immune response and onset of oocyte development in nematodes |
| Q30274627 | Human Nup98 regulates the localization and activity of DExH/D-box helicase DHX9 |
| Q91736686 | Human SNORA31 variations impair cortical neuron-intrinsic immunity to HSV-1 and underlie herpes simplex encephalitis |
| Q38319756 | Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach |
| Q33728106 | Human genome variation and the concept of genotype networks |
| Q34938931 | Human growth is associated with distinct patterns of gene expression in evolutionarily conserved networks. |
| Q35034366 | Human intellectual disability genes form conserved functional modules in Drosophila. |
| Q42958061 | Human microbiome signatures of differential colorectal cancer drug metabolism |
| Q48157343 | Human profilin 1 is a negative regulator of CTL mediated cell-killing and migration. |
| Q28570442 | Hypothalamic molecular changes underlying natural reproductive senescence in the female rat |
| Q36210206 | IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels |
| Q38913888 | ID helix-loop-helix proteins as determinants of cell survival in B-cell chronic lymphocytic leukemia cells in vitro |
| Q52881492 | IL-22 Impedes the Proliferation of Schwann cells: Transcriptome Sequencing and Bioinformatics Analysis. |
| Q35202373 | IL-7 coordinates proliferation, differentiation and Tcra recombination during thymocyte β-selection. |
| Q37556849 | IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes |
| Q35789049 | IMID: integrated molecular interaction database |
| Q39294242 | IQGAP1 is a key node within the small GTPase network |
| Q36713087 | Identification and Comparative Analysis of H2O2-Scavenging Enzymes (Ascorbate Peroxidase and Glutathione Peroxidase) in Selected Plants Employing Bioinformatics Approaches |
| Q56983822 | Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy |
| Q98465793 | Identification and Validation of Key Genes Associated With Systemic Sclerosis-Related Pulmonary Hypertension |
| Q97074965 | Identification and Verification of Biomarker in Clear Cell Renal Cell Carcinoma via Bioinformatics and Neural Network Model |
| Q28571470 | Identification and characterization of FGF2-dependent mRNA: microRNA networks during lens fiber cell differentiation |
| Q28483330 | Identification and characterization of antifungal compounds using a Saccharomyces cerevisiae reporter bioassay |
| Q92890237 | Identification and characterization of biomarkers and their functions for docetaxel-resistant prostate cancer cells |
| Q28488335 | Identification and characterization of potential therapeutic candidates in emerging human pathogen Mycobacterium abscessus: a novel hierarchical in silico approach |
| Q49213158 | Identification and differential expression of microRNAs in 1, 25-dihydroxyvitamin D3-induced osteogenic differentiation of human adipose-derived mesenchymal stem cells. |
| Q35088296 | Identification and differential expression of microRNAs in ovaries of laying and Broody geese (Anser cygnoides) by Solexa sequencing |
| Q38432744 | Identification and functional analysis of the risk microRNAs associated with cerebral low-grade glioma prognosis |
| Q39430420 | Identification and functional characterization of the miRNA-gene regulatory network in chronic myeloid leukemia lineage negative cells |
| Q90705921 | Identification and meta-analysis of copy number variation-driven circadian clock genes for colorectal cancer |
| Q89718081 | Identification and validation of key genes with prognostic value in non-small-cell lung cancer via integrated bioinformatics analysis |
| Q97537508 | Identification key genes, key miRNAs and key transcription factors of lung adenocarcinoma |
| Q27320213 | Identification of 526 conserved metazoan genetic innovations exposes a new role for cofactor E-like in neuronal microtubule homeostasis |
| Q28652443 | Identification of B cells participated in the mechanism of postmenopausal women osteoporosis using microarray analysis |
| Q40828673 | Identification of Biomarkers Associated With Alzheimer's Disease by Bioinformatics Analysis |
| Q55472371 | Identification of Biomarkers Based on Differentially Expressed Genes in Papillary Thyroid Carcinoma. |
| Q91711239 | Identification of Co-expressed Genes Between Atrial Fibrillation and Stroke |
| Q89422636 | Identification of Critical Genes and Five Prognostic Biomarkers Associated with Colorectal Cancer |
| Q50345064 | Identification of De Novo DNMT3A Mutations That Cause West Syndrome by Using Whole-Exome Sequencing. |
| Q91986215 | Identification of De Novo JAK2 and MAPK7 Mutations Related to Autism Spectrum Disorder Using Whole-Exome Sequencing in a Chinese Child and Adolescent Trio-Based Sample |
| Q34399565 | Identification of FHL2-regulated genes in liver by microarray and bioinformatics analysis. |
| Q35918335 | Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis |
| Q36946996 | Identification of Host Micro RNAs That Differentiate HIV-1 and HIV-2 Infection Using Genome Expression Profiling Techniques |
| Q93002445 | Identification of Key Biomarkers in Bladder Cancer: Evidence from a Bioinformatics Analysis |
| Q92539518 | Identification of Key Candidate Genes in Dairy Cow in Response to Escherichia coli Mastitis by Bioinformatical Analysis |
| Q93055320 | Identification of Key Genes and Prognostic Analysis between Chromophobe Renal Cell Carcinoma and Renal Oncocytoma by Bioinformatic Analysis |
| Q92543187 | Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data |
| Q92505620 | Identification of Monotonically Differentially Expressed Genes for IFN-β-Treated Multiple Sclerosis Patients |
| Q31155168 | Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice. |
| Q61814553 | Identification of Prognostic Biomarker Signatures and Candidate Drugs in Colorectal Cancer: Insights from Systems Biology Analysis |
| Q36339132 | Identification of Th1/Th2 regulatory switch to promote healing response during leishmaniasis: a computational approach |
| Q28505713 | Identification of Viral and Host Proteins That Interact with Murine Gammaherpesvirus 68 Latency-Associated Nuclear Antigen during Lytic Replication: a Role for Hsc70 in Viral Replication |
| Q42146678 | Identification of a complex genetic network underlying Saccharomyces cerevisiae colony morphology. |
| Q38463779 | Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads. |
| Q34578702 | Identification of a set of miRNAs differentially expressed in transiently TIA-depleted HeLa cells by genome-wide profiling |
| Q26829854 | Identification of aberrant pathways and network activities from high-throughput data |
| Q38640616 | Identification of an early transcriptomic signature of insulin resistance and related diseases in lymphomonocytes of healthy subjects. |
| Q62485353 | Identification of antiviral roles for the exon-junction complex and nonsense-mediated decay in flaviviral infection |
| Q47427252 | Identification of biomarkers for childhood obesity based on expressional correlation and functional similarity |
| Q30414752 | Identification of biomarkers to assess organ quality and predict posttransplantation outcomes. |
| Q90087549 | Identification of candidate genes associated with the pathogenesis of small cell lung cancer via integrated bioinformatics analysis |
| Q31114129 | Identification of candidate genes for myeloma-induced osteocyte death based on microarray data |
| Q90706172 | Identification of candidate genes for the diagnosis and treatment of cholangiocarcinoma using a bioinformatics approach |
| Q98945655 | Identification of circular RNA hsa_circ_0044556 and its effect on the progression of colorectal cancer |
| Q35094597 | Identification of core T cell network based on immunome interactome. |
| Q91713285 | Identification of core genes associated with prostate cancer progression and outcome via bioinformatics analysis in multiple databases |
| Q39226544 | Identification of crucial miRNAs and the targets in renal cortex of hypertensive patients by expression profiles |
| Q50067763 | Identification of differentially expressed genes and regulatory relationships in Huntington's disease by bioinformatics analysis. |
| Q90087556 | Identification of differentially expressed genes between primary lung cancer and lymph node metastasis via bioinformatic analysis |
| Q34400106 | Identification of differently expressed genes and small molecule drugs for Tetralogy of Fallot by bioinformatics strategy |
| Q41168990 | Identification of dysfunctional biological pathways and their synergistic mechanism in hepatocellular carcinoma process |
| Q34277557 | Identification of essential proteins based on ranking edge-weights in protein-protein interaction networks |
| Q33751311 | Identification of gene markers associated with metastasis in clear cell renal cell carcinoma |
| Q42293038 | Identification of genes associated with the effect of inflammation on the neurotransmission of vascular smooth muscle cell |
| Q37289393 | Identification of genes involved in Epstein-Barr virus-associated nasopharyngeal carcinoma |
| Q92891373 | Identification of hub genes and key pathways of dietary advanced glycation end products‑induced non‑alcoholic fatty liver disease by bioinformatics analysis and animal experiments |
| Q91739114 | Identification of key candidate genes and pathways in endometrial cancer: Evidence from bioinformatics analysis |
| Q91584962 | Identification of key candidate genes for colorectal cancer by bioinformatics analysis |
| Q52670086 | Identification of key genes and long non‑coding RNAs in celecoxib‑treated lung squamous cell carcinoma cell line by RNA‑sequencing. |
| Q90291245 | Identification of key genes and microRNAs involved in kidney Wilms tumor by integrated bioinformatics analysis |
| Q55000194 | Identification of key genes and pathways in meningioma by bioinformatics analysis. |
| Q33675020 | Identification of key genes associated with Schmid-type metaphyseal chondrodysplasia based on microarray data |
| Q31044596 | Identification of key genes associated with gastric cancer based on DNA microarray data |
| Q92382651 | Identification of key genes for predicting colorectal cancer prognosis by integrated bioinformatics analysis |
| Q47737163 | Identification of key genes in endometrioid endometrial adenocarcinoma via TCGA database |
| Q47448556 | Identification of key genes in glioma CpG island methylator phenotype via network analysis of gene expression data |
| Q52605264 | Identification of key genes in non‑alcoholic fatty liver disease progression based on bioinformatics analysis. |
| Q47155974 | Identification of key genes influenced by fixation stability in early fracture hematoma and elucidation of their roles in fracture healing |
| Q91590649 | Identification of key genes involved in myocardial infarction |
| Q94475226 | Identification of key lncRNAs as prognostic prediction models for colorectal cancer based on LASSO |
| Q49438443 | Identification of key miRNAs and genes associated with stomach adenocarcinoma from The Cancer Genome Atlas database. |
| Q90884479 | Identification of key protein-coding genes and lncRNAs in spontaneous neutrophil apoptosis |
| Q36860719 | Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis |
| Q61449317 | Identification of key regulators of pancreatic ductal adenocarcinoma using bioinformatics analysis of microarray data |
| Q47163598 | Identification of key signaling pathways in cerebral small vessel disease using differential pathway network analysis |
| Q34302898 | Identification of metagenes and their interactions through large-scale analysis of Arabidopsis gene expression data |
| Q37116339 | Identification of microRNAs and Their Target Genes Explores miRNA-Mediated Regulatory Network of Cytoplasmic Male Sterility Occurrence during Anther Development in Radish (Raphanus sativus L.). |
| Q38726982 | Identification of molecular biomarkers for pancreatic cancer with mRMR shortest path method |
| Q37258195 | Identification of molecular pathway changes after spinal cord injury by microarray analysis |
| Q34645297 | Identification of molecular processes needed for vascular formation through transcriptome analysis of different vascular systems |
| Q47126103 | Identification of new genes associated to senescent and tumorigenic phenotypes in mesenchymal stem cells. |
| Q28485040 | Identification of new protein interactions between dengue fever virus and its hosts, human and mosquito |
| Q42775116 | Identification of non-coding and coding RNAs in porcine endometrium |
| Q36953423 | Identification of nondiabetic heart failure-associated genes by bioinformatics approaches in patients with dilated ischemic cardiomyopathy |
| Q27335907 | Identification of novel and differentially expressed MicroRNAs of dairy goat mammary gland tissues using solexa sequencing and bioinformatics |
| Q92696826 | Identification of novel biomarkers and candidate small molecule drugs in non-small-cell lung cancer by integrated microarray analysis |
| Q92009016 | Identification of novel biomarkers and small molecule drugs in human colorectal cancer by microarray and bioinformatics analysis |
| Q89567496 | Identification of novel diabetes impaired miRNA-transcription factor co-regulatory networks in bone marrow-derived Lin-/VEGF-R2+ endothelial progenitor cells |
| Q41957763 | Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography |
| Q28541819 | Identification of odorant-receptor interactions by global mapping of the human odorome |
| Q91791014 | Identification of potential core genes in metastatic renal cell carcinoma using bioinformatics analysis |
| Q38633652 | Identification of potential key genes associated with glioblastoma based on the gene expression profile |
| Q94554371 | Identification of potential microRNA panels for pancreatic cancer diagnosis using microarray datasets and bioinformatics methods |
| Q36824825 | Identification of potential therapeutic target genes and mechanisms in head and neck squamous cell carcinoma by bioinformatics analysis |
| Q92242442 | Identification of primary genes in glomeruli compartment of immunoglobulin A nephropathy by bioinformatic analysis |
| Q30658102 | Identification of putative drug targets for human sperm-egg interaction defect using protein network approach |
| Q35971456 | Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS. |
| Q89948288 | Identification of significant gene biomarkers of low back pain caused by changes in the osmotic pressure of nucleus pulposus cells |
| Q64059563 | Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq |
| Q37407222 | Identification of targets of miRNA-221 and miRNA-222 in fulvestrant-resistant breast cancer |
| Q51417480 | Identification of the key genes associated with neuropathic pain. |
| Q98386538 | Identification of transcriptomic markers for developing idiopathic pulmonary fibrosis: an integrative analysis of gene expression profiles |
| Q99406578 | Identification of tumor-infiltrating immune cells and prognostic validation of tumor-infiltrating mast cells in adrenocortical carcinoma: results from bioinformatics and real-world data |
| Q34315296 | Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics |
| Q99552126 | Identification, Validation, and Functional Annotations of Genome-Wide Profile Variation between Melanocytic Nevus and Malignant Melanoma |
| Q47245987 | Identify bilayer modules via pseudo-3D clustering: applications to miRNA-gene bilayer networks |
| Q64891661 | Identify the Key Active Ingredients and Pharmacological Mechanisms of Compound XiongShao Capsule in Treating Diabetic Peripheral Neuropathy by Network Pharmacology Approach. |
| Q47599775 | Identifying Gene Interaction Networks |
| Q50052861 | Identifying characteristic miRNAs-genes and risk pathways of multiple sclerosis based on bioinformatics analysis. |
| Q37365128 | Identifying environmental health priorities in underserved populations: a study of rural versus urban communities |
| Q38498519 | Identifying gene interaction networks |
| Q52310220 | Identifying genes as potential prognostic indicators in patients with serous ovarian cancer resistant to carboplatin using integrated bioinformatics analysis. |
| Q41903687 | Identifying new targets in leukemogenesis using computational approaches |
| Q34335913 | Identifying roles of "Jun-Chen-Zuo-Shi" component herbs of QiShenYiQi formula in treating acute myocardial ischemia by network pharmacology |
| Q53443483 | Identifying the potential extracellular electron transfer pathways from a c-type cytochrome network. |
| Q30443419 | Identifying tinnitus-related genes based on a side-effect network analysis |
| Q30851875 | Image-guided genomics of phenotypically heterogeneous populations reveals vascular signalling during symbiotic collective cancer invasion. |
| Q38470347 | Immune- and ribosome-related genes were associated with systemic vasculitis |
| Q90446225 | Immune-related prognosis biomarkers associated with osteosarcoma microenvironment |
| Q34251673 | Immunoglobulin class-switched B cells form an active immune axis between CNS and periphery in multiple sclerosis. |
| Q34713351 | Immunomodulatory impact of leishmania-induced macrophage exosomes: a comparative proteomic and functional analysis |
| Q91598466 | Impact of Porphyromonas gingivalis Peptidylarginine Deiminase on Bacterial Biofilm Formation, Epithelial Cell Invasion, and Epithelial Cell Transcriptional Landscape |
| Q36966559 | Impact of the Type I Interferon Receptor on the Global Gene Expression Program During the Course of Dendritic Cell Maturation Induced by Polyinosinic Polycytidylic Acid |
| Q38261266 | Improved understanding of pathogenesis from protein interactions in Mycobacterium tuberculosis |
| Q53589942 | Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology |
| Q37652977 | In multiple sclerosis, oligoclonal bands connect to peripheral B-cell responses. |
| Q35907484 | In silico analyses of heparin binding proteins expression in human periodontal tissues |
| Q38908054 | In silico analysis of Mn transporters (NRAMP1) in various plant species. |
| Q34700616 | In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases |
| Q51064559 | In silico analysis of miRNA-mediated gene regulation in OCA and OA genes. |
| Q36224835 | In silico analysis of the molecular mechanism of postmenopausal osteoporosis |
| Q84252582 | In silico and in vivo evaluation of flavonoid extracts on CYP2D6-mediated herb-drug interaction |
| Q37655004 | In silico evidence of signaling pathways of notch mediated networks in leukemia |
| Q34728806 | In silico molecular cytogenetics: a bioinformatic approach to prioritization of candidate genes and copy number variations for basic and clinical genome research. |
| Q36384077 | In silico target fishing and pharmacological profiling for the isoquinoline alkaloids of Macleaya cordata (Bo Luo Hui) |
| Q47165531 | In silico-based screen synergistic drug combinations from herb medicines: a case using Cistanche tubulosa |
| Q34996402 | In vivo genome-wide analysis of multiple tissues identifies gene regulatory networks, novel functions and downstream regulatory genes for Bapx1 and its co-regulation with Sox9 in the mammalian vertebral column |
| Q36371011 | Increased co-expression of genes harboring the damaging de novo mutations in Chinese schizophrenic patients during prenatal development |
| Q35214418 | Increased expression of interferon signaling genes in the bone marrow microenvironment of myelodysplastic syndromes |
| Q40301090 | Increasing the precision of orthology-based complex prediction through network alignment. |
| Q39230865 | Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides |
| Q46507221 | Individual and molecular level effects of produced water contaminants on nauplii and adult females of Calanus finmarchicus |
| Q38779795 | Infection of human airway epithelial cells by different subtypes of Dobrava-Belgrade virus reveals gene expression patterns corresponding to their virulence potential. |
| Q40973379 | Inference of the Arabidopsis lateral root gene regulatory network suggests a bifurcation mechanism that defines primordia flanking and central zones |
| Q47094705 | Inference of time-delayed gene regulatory networks based on dynamic Bayesian network hybrid learning method |
| Q28643758 | Inferring drug-disease associations based on known protein complexes |
| Q35175782 | Inferring host gene subnetworks involved in viral replication |
| Q51229736 | Inferring pathway crosstalk networks using gene set co-expression signatures. |
| Q30584795 | Inferring the Brassica rapa Interactome Using Protein-Protein Interaction Data from Arabidopsis thaliana. |
| Q34978376 | Inferring the effective TOR-dependent network: a computational study in yeast |
| Q45911835 | Inferring the soybean (Glycine max) microRNA functional network based on target gene network. |
| Q50620946 | Inflammatory pathway network-based drug repositioning and molecular phenomics. |
| Q36410041 | Inhibition of elongin C promotes longevity and protein homeostasis via HIF-1 in C. elegans |
| Q35840705 | Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas). |
| Q37451325 | Innate immunity interactome dynamics |
| Q36491232 | InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation |
| Q37399041 | Insights from the Cold Transcriptome and Metabolome of Dendrobium officinale: Global Reprogramming of Metabolic and Gene Regulation Networks during Cold Acclimation |
| Q34759965 | Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning. |
| Q36250099 | Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles. |
| Q51072922 | Insights into pathophysiology of dystropy through the analysis of gene networks: an example of bronchial asthma and tuberculosis. |
| Q34010109 | Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters |
| Q38955892 | Insights into the inhibition and mechanism of compounds against LPS-induced PGE2 production: a pathway network-based approach and molecular dynamics simulations |
| Q30774194 | Insights into the pathophysiology of catch-up compared with non-catch-up growth in children born small for gestational age: an integrated analysis of metabolic and transcriptomic data |
| Q34602621 | Insights on the functional impact of microRNAs present in autism-associated copy number variants |
| Q36318502 | Insulin and diet-induced changes in the ubiquitin-modified proteome of rat liver |
| Q41844217 | IntScore: a web tool for confidence scoring of biological interactions |
| Q92683639 | Integral analyses of survival-related long non-coding RNA MIR210HG and its prognostic role in colon cancer |
| Q35092970 | Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling |
| Q89640277 | Integrated analysis and knockdown of RAB23 indicate the role of RAB23 in gastric adenocarcinoma |
| Q28484592 | Integrated analysis of gene expression profiles associated with response of platinum/paclitaxel-based treatment in epithelial ovarian cancer |
| Q55162779 | Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes |
| Q63349783 | Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes |
| Q92480202 | Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue |
| Q42638788 | Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets |
| Q59813329 | Integrated analysis reveals key genes with prognostic value in lung adenocarcinoma |
| Q43561022 | Integrated approach to explore the mechanisms of aromatase inhibition and recovery in fathead minnows (Pimephales promelas). |
| Q52579388 | Integrated bioinformatic analysis unveils significant genes and pathways in the pathogenesis of supratentorial primitive neuroectodermal tumor. |
| Q52716882 | Integrated bioinformatics analysis reveals key candidate genes and pathways in breast cancer. |
| Q52371991 | Integrated in vivo multiomics analysis identifies p21-activated kinase signaling as a driver of colitis. |
| Q109715902 | Integrated mRNA and miRNA Transcriptomic Analyses Reveals Divergent Mechanisms of Sunitinib Resistance in Clear Cell Renal Cell Carcinoma (ccRCC) |
| Q59329795 | Integrated mapping of pharmacokinetics and pharmacodynamics in a patient-derived xenograft model of glioblastoma |
| Q64271688 | Integrated microRNA and transcriptome profiling reveals a miRNA-mediated regulatory network of embryo abortion under calcium deficiency in peanut (Arachis hypogaea L.) |
| Q36722119 | Integrated microRNA‑gene analysis of coronary artery disease based on miRNA and gene expression profiles |
| Q28652732 | Integrated network analysis and effective tools in plant systems biology. |
| Q35664625 | Integrated web visualizations for protein-protein interaction databases |
| Q35695964 | Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis |
| Q37317366 | Integrating in silico resources to map a signaling network |
| Q28382913 | Integrating murine gene expression studies to understand obstructive lung disease due to chronic inhaled endotoxin |
| Q35053850 | Integrating structure to protein-protein interaction networks that drive metastasis to brain and lung in breast cancer |
| Q36407813 | Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development |
| Q39622523 | Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis. |
| Q41477408 | Integration of deep transcriptome and proteome analyses of salicylic acid regulation high temperature stress in Ulva prolifera |
| Q30778307 | Integration of gene expression data with network-based analysis to identify signaling and metabolic pathways regulated during the development of osteoarthritis |
| Q42075255 | Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis |
| Q42270733 | Integration of lncRNA-miRNA-mRNA reveals novel insights into oviposition regulation in honey bees |
| Q39668813 | Integrative Analyses of miRNA-mRNA Interactions Reveal let-7b, miR-128 and MAPK Pathway Involvement in Muscle Mass Loss in Sex-Linked Dwarf Chickens |
| Q36102667 | Integrative analyses reveal transcriptome-proteome correlation in biological pathways and secondary metabolism clusters in A. flavus in response to temperature |
| Q28266473 | Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans |
| Q34332040 | Integrative analysis of common neurodegenerative diseases using gene association, interaction networks and mRNA expression data |
| Q36285430 | Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer |
| Q37622025 | Integrative analysis of miRNA-mRNA and miRNA-miRNA interactions |
| Q39155136 | Integrative analysis of ocular complications in atherosclerosis unveils pathway convergence and crosstalk. |
| Q35181521 | Integrative analysis of transcriptional regulatory network and copy number variation in intrahepatic cholangiocarcinoma |
| Q47124134 | Integrative analysis to identify oncogenic gene expression changes associated with copy number variations of enhancer in ovarian cancer |
| Q30278389 | Integrative analysis to select cancer candidate biomarkers to targeted validation |
| Q30836930 | Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data |
| Q45210539 | Integrative systems analysis of diet-induced obesity identified a critical transition in the transcriptomes of the murine liver and epididymal white adipose tissue |
| Q36796060 | Integrative transcriptome, proteome, phosphoproteome and genetic mapping reveals new aspects in a fiberless mutant of cotton |
| Q100559171 | Integrative transcriptomic analysis for linking acute stress responses to squamous cell carcinoma development |
| Q36282693 | Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis |
| Q50612850 | Interaction and localization diversities of global and local hubs in human protein-protein interaction networks. |
| Q62037364 | Interaction in the Visualization of Multivariate Networks |
| Q40730543 | Interaction networks for identifying coupled molecular processes in microbial communities. |
| Q42277730 | Interaction proteomics identify NEURL4 and the HECT E3 ligase HERC2 as novel modulators of centrosome architecture |
| Q93010095 | Interactions between the gut microbiome and host gene regulation in cystic fibrosis |
| Q36040364 | Interactions of the Antiviral Factor Interferon Gamma-Inducible Protein 16 (IFI16) Mediate Immune Signaling and Herpes Simplex Virus-1 Immunosuppression |
| Q52340906 | Interactome analysis of transforming growth factor-β-activated kinase 1 in Helicobacter pylori-infected cells revealed novel regulators tripartite motif 28 and CDC37. |
| Q38479538 | Interactomics of Qa-SNARE in Arabidopsis thaliana |
| Q28488156 | Interface-resolved network of protein-protein interactions |
| Q51025796 | Interferon-beta therapy in multiple sclerosis: the short-term and long-term effects on the patients' individual gene expression in peripheral blood. |
| Q36337749 | Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends. |
| Q34215119 | Interpretation of appearance: the effect of facial features on first impressions and personality |
| Q34959567 | Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome |
| Q33887767 | Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections |
| Q35856294 | Intra-tumor heterogeneity in TP53 null High Grade Serous Ovarian Carcinoma progression |
| Q36443589 | Intragraft transcriptional profiling of renal transplant patients with tubular dysfunction reveals mechanisms underlying graft injury and recovery |
| Q44681284 | Intrathecal somatic hypermutation of IgM in multiple sclerosis and neuroinflammation |
| Q58605280 | Investigate the mechanisms of Chinese medicine Fuzhengkangai towards EGFR mutation-positive lung adenocarcinomas by network pharmacology |
| Q41595214 | Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer |
| Q38432973 | Investigating critical genes and gene interaction networks that mediate cyclophosphamide sensitivity in chronic myelogenous leukemia |
| Q36287303 | Investigation of Pathogenic Genes in Chinese sporadic Hypertrophic Cardiomyopathy Patients by Whole Exome Sequencing |
| Q92637638 | Investigation of Premyrsinane and Myrsinane Esters in Euphorbia cupanii and Euphobia pithyusa with MS2LDA and Combinatorial Molecular Network Annotation Propagation |
| Q34268107 | Investigation of galectin-3 function in the reproductive tract by identification of binding ligands in human seminal plasma |
| Q89584165 | Investigation of hub genes and their nonsynonymous single nucleotide polymorphism analysis in Plasmodium falciparum for designing therapeutic methodologies using next-generation sequencing approach |
| Q33748590 | Investigation of pathogenic genes in peri-implantitis from implant clustering failure patients: a whole-exome sequencing pilot study |
| Q35727617 | Involvement of enhancer of zeste homolog 2 in cisplatin-resistance in ovarian cancer cells by interacting with several genes |
| Q27314796 | Ion concentration-dependent ion conduction mechanism of a voltage-sensitive potassium channel |
| Q111427178 | Isolation and Structural Elucidation of Compounds from Pleiocarpa bicarpellata and Their In Vitro Antiprotozoal Activity |
| Q34342703 | Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks |
| Q49958749 | Ixr1 Regulates Ribosomal Gene Transcription and Yeast Response to Cisplatin. |
| Q39084316 | JUNB is a key transcriptional modulator of macrophage activation |
| Q90009717 | Japanese subgingival microbiota in health vs disease and their roles in predicted functions associated with periodontitis |
| Q34078162 | KEGGscape: a Cytoscape app for pathway data integration |
| Q36521427 | KENeV: A web-application for the automated reconstruction and visualization of the enriched metabolic and signaling super-pathways deriving from genomic experiments |
| Q37105600 | KdmA, a histone H3 demethylase with bipartite function, differentially regulates primary and secondary metabolism in Aspergillus nidulans |
| Q50866794 | Keloid-derived keratinocytes exhibit an abnormal gene expression profile consistent with a distinct causal role in keloid pathology. |
| Q89805600 | Kernel Differential Subgraph Analysis to Reveal the Key Period Affecting Glioblastoma |
| Q91705838 | Key Genes And Pathways Controlled By E2F1 In Human Castration-Resistant Prostate Cancer Cells |
| Q31153200 | Key Genes in Stomach Adenocarcinoma Identified via Network Analysis of RNA-Seq Data |
| Q38475190 | Key genes associated with osteoporosis revealed by genome wide gene expression analysis |
| Q95261606 | Key genes of renal tubular necrosis: a bioinformatics analysis |
| Q93009426 | Key genes with prognostic values in suppression of osteosarcoma metastasis using comprehensive analysis |
| Q36346339 | Knowledge building insights on biomarkers of arsenic toxicity to keratinocytes and melanocytes |
| Q28658294 | Knowledge extraction and semantic annotation of text from the encyclopedia of life |
| Q51039873 | LCK: a new biomarker candidate for the early diagnosis of acute myocardial infarction. |
| Q35872307 | LENS: web-based lens for enrichment and network studies of human proteins |
| Q31131478 | LPRP: A Gene-Gene Interaction Network Construction Algorithm and Its Application in Breast Cancer Data Analysis |
| Q42374101 | LSTrAP: efficiently combining RNA sequencing data into co-expression networks |
| Q35557001 | Label-free LC-MS/MS quantitative analysis of aqueous humor from keratoconic and normal eyes |
| Q34267969 | Label-free LC-MSe in tissue and serum reveals protein networks underlying differences between benign and malignant serous ovarian tumors. |
| Q90093315 | Label-free quantitative identification of abnormally ubiquitinated proteins as useful biomarkers for human lung squamous cell carcinomas |
| Q37723648 | Laminar and temporal expression dynamics of coding and noncoding RNAs in the mouse neocortex |
| Q34325506 | Large scale genotype comparison of human papillomavirus E2-host interaction networks provides new insights for e2 molecular functions |
| Q41702763 | Large-scale cross-species chemogenomic platform proposes a new drug discovery strategy of veterinary drug from herbal medicines. |
| Q37546467 | Large-scale investigation of Leishmania interaction networks with host extracellular matrix by surface plasmon resonance imaging |
| Q33557481 | Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states |
| Q35895719 | Large-scale phosphotyrosine proteomic profiling of rat renal collecting duct epithelium reveals predominance of proteins involved in cell polarity determination |
| Q34471805 | Large-scale screen for modifiers of ataxin-3-derived polyglutamine-induced toxicity in Drosophila |
| Q37120236 | Lectin-Glycan Interaction Network-Based Identification of Host Receptors of Microbial Pathogenic Adhesins |
| Q28817917 | Lifestyle chemistries from phones for individual profiling |
| Q46014178 | Lignification in sugarcane: biochemical characterization, gene discovery, and expression analysis in two genotypes contrasting for lignin content. |
| Q36275655 | Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis |
| Q34804879 | Link Clustering with Extended Link Similarity and EQ Evaluation Division |
| Q37532007 | Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny |
| Q84594290 | Linked gene networks involved in nitrogen and carbon metabolism and levels of water-soluble carbohydrate accumulation in wheat stems |
| Q21146645 | Linked vaccine adverse event data from VAERS for biomedical data analysis and longitudinal studies |
| Q54974865 | Linking Associations of Rare Low-Abundance Species to Their Environments by Association Networks. |
| Q36239393 | Linking Hematopoietic Differentiation to Co-Expressed Sets of Pluripotency-Associated and Imprinted Genes and to Regulatory microRNA-Transcription Factor Motifs |
| Q38192508 | Literature-based automated reconstruction, expansion, and refinement of the TGF-β superfamily ligand-receptor network. |
| Q58802033 | Liuwei Dihuang pill cures postmenopausal osteoporosis with kidney-Yin deficiency: Potential therapeutic targets identified based on gene expression profiling |
| Q47897121 | LncRNAs in Secondary Hair Follicle of Cashmere Goat: Identification, Expression, and Their Regulatory Network in Wnt Signaling Pathway |
| Q34455401 | Localization and proteomic characterization of cholesterol-rich membrane microdomains in the inner ear. |
| Q91910144 | Long Noncoding RNA Expression Profile in BV2 Microglial Cells Exposed to Lipopolysaccharide |
| Q42117522 | Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation |
| Q35802094 | Longitudinal analysis reveals characteristically high proportions of bacterial vaginosis-associated bacteria and temporal variability of vaginal microbiota in northern pig-tailed macaques (Macaca leonina). |
| Q34278592 | MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). |
| Q95265925 | MCM2 and NUSAP1 Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic Cancer |
| Q36752469 | MCT1 Modulates Cancer Cell Pyruvate Export and Growth of Tumors that Co-express MCT1 and MCT4 |
| Q39642515 | MDM2 facilitates adipocyte differentiation through CRTC-mediated activation of STAT3 |
| Q39168283 | MMPREDOX/NO interplay in periodontitis and its inhibition with Satureja hortensis L. essential oil. |
| Q47304411 | MOCASSIN-prot: A Multi-Objective Clustering Approach for Protein Similarity Networks |
| Q24622243 | MOPED: Model Organism Protein Expression Database |
| Q37010777 | MS/MS networking guided analysis of molecule and gene cluster families. |
| Q37572589 | MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus |
| Q38258895 | MS/MS-based strategies for proteomic profiling of invasive cell structures |
| Q45218388 | MSMExplorer: visualizing Markov state models for biomolecule folding simulations |
| Q45948334 | Machine Learning of Global Phosphoproteomic Profiles Enables Discrimination of Direct versus Indirect Kinase Substrates. |
| Q49789096 | Machine learning for the meta-analyses of microbial pathogens' volatile signatures. |
| Q39139700 | Major components of energy drinks (caffeine, taurine, and guarana) exert cytotoxic effects on human neuronal SH-SY5Y cells by decreasing reactive oxygen species production |
| Q30441052 | Male-specific fruitless isoforms target neurodevelopmental genes to specify a sexually dimorphic nervous system |
| Q36480622 | Managing biological complexity across orthologs with a visual knowledgebase of documented biomolecular interactions |
| Q36094564 | Mango: combining and analyzing heterogeneous biological networks. |
| Q34598088 | Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network |
| Q41460551 | Mapping native disulfide bonds at a proteome scale |
| Q39410121 | Mapping of Chikungunya virus interactions with host proteins identified nsP2 as a highly connected viral component |
| Q90393935 | Mapping the Genetic Landscape of Human Cells |
| Q34626429 | Mapping the cellular response to small molecules using chemogenomic fitness signatures |
| Q30519465 | Mass spectral molecular networking of living microbial colonies |
| Q30923932 | Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. |
| Q38217990 | Mass spectrometry-driven phosphoproteomics: patterning the systems biology mosaic |
| Q50791944 | Matricellular TSP-1 as a target of interest for impeding melanoma spreading: towards a therapeutic use for TAX2 peptide. |
| Q27931022 | Mcm2 phosphorylation and the response to replicative stress |
| Q37271030 | Measuring the evolution and output of cross-disciplinary collaborations within the NCI Physical Sciences-Oncology Centers Network |
| Q56571459 | Measuring the systemic importance of interconnected industries in the world economic system |
| Q38415445 | Mechanotransduction map: simulation model, molecular pathway, gene set. |
| Q36245261 | Mediation of Drosophila autosomal dosage effects and compensation by network interactions |
| Q47094587 | Medical examination powers miR-194-5p as a biomarker for postmenopausal osteoporosis |
| Q41994633 | Members of Gammaproteobacteria as indicator species of healthy banana plants on Fusarium wilt-infested fields in Central America |
| Q43704553 | MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis |
| Q31031297 | Meta- and Orthogonal Integration of Influenza "OMICs" Data Defines a Role for UBR4 in Virus Budding. |
| Q34963371 | Meta-analysis of genetic programs between idiopathic pulmonary fibrosis and sarcoidosis |
| Q30584141 | Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates. |
| Q34292227 | MetaProx: the database of metagenomic proximons |
| Q39459990 | Metabolic model for the filamentous 'Candidatus Microthrix parvicella' based on genomic and metagenomic analyses |
| Q35617019 | Metabolic responses of willow (Salix purpurea L.) leaves to mycorrhization as revealed by mass spectrometry and (1)H NMR spectroscopy metabolite profiling |
| Q47631143 | Metabolite profiling and associated gene expression reveal two metabolic shifts during the seed-to-seedling transition in Arabidopsis thaliana. |
| Q37080901 | Metabolites involved in glycolysis and amino acid metabolism are altered in short children born small for gestational age. |
| Q60920762 | Metabolomic Analysis of Defense-Related Reprogramming in in Response to Infection Reveals a Functional Metabolic Web of Phenylpropanoid and Flavonoid Pathways |
| Q38339740 | Metabolomic applications in nutritional research: a perspective |
| Q89776433 | Metabolomics analysis and metabolite-agronomic trait associations using kernels of wheat (Triticum aestivum) recombinant inbred lines |
| Q37933076 | Metabolomics and its application to studying metal toxicity. |
| Q36044717 | Metabolomics and metabolic pathway networks from human colorectal cancers, adjacent mucosa, and stool |
| Q27144251 | Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery |
| Q38450439 | Metabolomics in chemical ecology |
| Q34937774 | Metagenomic guilt by association: an operonic perspective |
| Q58119825 | Metapopulation Structure of CRISPR-Cas Immunity in and Its Viruses |
| Q35566941 | Metatranscriptome analyses indicate resource partitioning between diatoms in the field |
| Q92198148 | Methanogenesis marker protein 10 (Mmp10) from Methanosarcina acetivorans is a radical S-adenosylmethionine methylase that unexpectedly requires cobalamin |
| Q30877319 | Methodology for the inference of gene function from phenotype data |
| Q38812665 | Methods, Tools and Current Perspectives in Proteogenomics |
| Q35374504 | MiR-101 induces senescence and prevents apoptosis in the background of DNA damage in MCF7 cells |
| Q35386890 | MiRNA and TF co-regulatory network analysis for the pathology and recurrence of myocardial infarction |
| Q40752593 | MiRTargetLink--miRNAs, Genes and Interaction Networks |
| Q41620868 | MicroRNA Response Elements-Mediated miRNA-miRNA Interactions in Prostate Cancer |
| Q36172565 | MicroRNA and protein profiles in invasive versus non-invasive oral tongue squamous cell carcinoma cells in vitro. |
| Q37139127 | MicroRNA expression changes during interferon-beta treatment in the peripheral blood of multiple sclerosis patients |
| Q35010459 | MicroRNA expression profile in human macrophages in response to Leishmania major infection |
| Q41524010 | MicroRNA expression profiling and bioinformatics analysis of dysregulated microRNAs in obstructive sleep apnea patients |
| Q35679000 | MicroRNA network changes in the brain stem underlie the development of hypertension |
| Q28076427 | MicroRNA-183 Family in Inner Ear: Hair Cell Development and Deafness |
| Q50036115 | MicroRNA-200a confers chemoresistance by antagonizing TP53INP1 and YAP1 in human breast cancer. |
| Q41441577 | MicroRNAs tend to synergistically control expression of genes encoding extensively-expressed proteins in humans |
| Q34672764 | Microarray analyses of glucocorticoid and vitamin D3 target genes in differentiating cultured human podocytes |
| Q34538260 | Microarray analysis of the transcriptional responses of Porphyromonas gingivalis to polyphosphate |
| Q47328605 | Microarray analysis reveals gene and microRNA signatures in diabetic kidney disease |
| Q36089757 | Microarray based analysis of gene regulation by microRNA in intervertebral disc degeneration |
| Q33702066 | Microarray‑based screening of differentially expressed genes in glucocorticoid‑induced avascular necrosis |
| Q41676401 | Microbes and associated soluble and volatile chemicals on periodically wet household surfaces |
| Q28538561 | Microbial communities in sunken wood are structured by wood-boring bivalves and location in a submarine canyon |
| Q34337828 | Microbial interactions: from networks to models |
| Q64982747 | Microbiome-Metabolomics Analysis Investigating the Impacts of Dietary Starch Types on the Composition and Metabolism of Colonic Microbiota in Finishing Pigs. |
| Q35609034 | Mimoza: web-based semantic zooming and navigation in metabolic networks |
| Q39165584 | Mining Bacterial Genomes for Secondary Metabolite Gene Clusters. |
| Q41857971 | Mining large-scale response networks reveals 'topmost activities' in Mycobacterium tuberculosis infection |
| Q28478835 | Mitochondrial electron transport is the cellular target of the oncology drug elesclomol |
| Q47259445 | Mitogen-activated protein kinases, Fus3 and Kss1, regulate chronological lifespan in yeast |
| Q42265576 | Model-based unsupervised learning informs metformin-induced cell-migration inhibition through an AMPK-independent mechanism in breast cancer |
| Q46249708 | Modeling of the jasmonate signaling pathway in Arabidopsis thaliana with respect to pathophysiology of Alternaria blight in Brassica |
| Q30580906 | Modeling the transcriptional regulatory network that controls the early hypoxic response in Candida albicans |
| Q41991111 | Modeling using clinical examination indicators predicts interstitial lung disease among patients with rheumatoid arthritis |
| Q34978643 | Modularity and evolutionary constraints in a baculovirus gene regulatory network |
| Q28478957 | Modularity in protein complex and drug interactions reveals new polypharmacological properties |
| Q37727621 | Modulation of gene expression regulated by the transcription factor NF-κB/RelA |
| Q27683332 | Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase |
| Q34530682 | Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum |
| Q38838724 | Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study |
| Q28590275 | Molecular Diversity of Terpene Synthases in the Liverwort Marchantia polymorpha |
| Q33561786 | Molecular Mechanisms of Mild and Severe Pneumonia: Insights from RNA Sequencing |
| Q33767905 | Molecular Targets and Associated Potential Pathways of Danlu Capsules in Hyperplasia of Mammary Glands Based on Systems Pharmacology |
| Q27323020 | Molecular and cellular changes in the lumbar spinal cord following thoracic injury: regulation by treadmill locomotor training |
| Q35566907 | Molecular cartography of the human skin surface in 3D |
| Q38961897 | Molecular characterization of immortalized normal and dysplastic oral cell lines |
| Q30355077 | Molecular dynamics study of HIV-1 RT-DNA-nevirapine complexes explains NNRTI inhibition and resistance by connection mutations |
| Q59813155 | Molecular epidemiology of a primarily MSM acute HIV-1 cohort in Bangkok, Thailand and connections within networks of transmission in Asia |
| Q42253358 | Molecular evolution of viral multifunctional proteins: the case of potyvirus HC-Pro. |
| Q38011667 | Molecular interaction databases |
| Q30688142 | Molecular mechanisms of system responses to novel stimuli are predictable from public data |
| Q37606062 | Molecular networking as a dereplication strategy |
| Q36050749 | Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure |
| Q28661106 | Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities |
| Q39657304 | Molecular signatures of ovarian diseases: Insights from network medicine perspective. |
| Q21132397 | Molecular strategies of the Caenorhabditis elegans dauer larva to survive extreme desiccation |
| Q36865004 | Molecular targets of Chinese herbs: a clinical study of hepatoma based on network pharmacology |
| Q54957720 | Molecular targets of Chinese herbs: a clinical study of metastatic colorectal cancer based on network pharmacology. |
| Q41143885 | Morphine Regulated Synaptic Networks Revealed by Integrated Proteomics and Network Analysis |
| Q36076324 | Mosaic: making biological sense of complex networks |
| Q34428358 | Multi-edge gene set networks reveal novel insights into global relationships between biological themes |
| Q44917386 | Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota |
| Q36555600 | Multi-tissue transcriptomics for construction of a comprehensive gene resource for the terrestrial snail Theba pisana |
| Q38941677 | Multiple approaches to assess the safety of artisanal marine food in a tropical estuary. |
| Q39297788 | Multiple approaches to microbial source tracking in tropical northern Australia |
| Q50320452 | Multitarget Effects of Danqi Pill on Global Gene Expression Changes in Myocardial Ischemia. |
| Q47684031 | MutaNET: a tool for automated analysis of genomic mutations in gene regulatory networks |
| Q44670794 | Mutations in microRNA binding sites of CEP genes involved in cancer |
| Q27675886 | Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of -factor activity by proteolysis |
| Q37530015 | NCMine: Core-peripheral based functional module detection using near-clique mining |
| Q52692009 | NF-Y-dependent regulation of glutamate receptor 4 expression and cell survival in cells of the oligodendrocyte lineage. |
| Q33632205 | NF-κB activation-induced anti-apoptosis renders HER2-positive cells drug resistant and accelerates tumor growth |
| Q33706302 | NFPscanner: a webtool for knowledge-based deciphering of biomedical networks |
| Q35137097 | NatalieQ: a web server for protein-protein interaction network querying |
| Q64125076 | Navigating the disease landscape: knowledge representations for contextualizing molecular signatures |
| Q37105281 | Navigating traditional chinese medicine network pharmacology and computational tools |
| Q33767131 | Neighbours of cancer-related proteins have key influence on pathogenesis and could increase the drug target space for anticancer therapies |
| Q41788133 | NetAligner--a network alignment server to compare complexes, pathways and whole interactomes. |
| Q34316790 | NetWalker: a contextual network analysis tool for functional genomics |
| Q35705010 | Network Analysis for the Identification of Differentially Expressed Hub Genes Using Myogenin Knock-down Muscle Satellite Cells |
| Q28552480 | Network Analysis of Human Genes Influencing Susceptibility to Mycobacterial Infections |
| Q37486684 | Network Analysis-Based Approach for Exploring the Potential Diagnostic Biomarkers of Acute Myocardial Infarction |
| Q64229425 | Network Pharmacology Deciphering Mechanisms of Volatiles of Granule for the Treatment of Alzheimer's Disease |
| Q59813341 | Network Pharmacology to Unveil the Biological Basis of Health-Strengthening Herbal Medicine in Cancer Treatment |
| Q92898593 | Network Pharmacology-Based Investigation into the Mechanisms of Quyushengxin Formula for the Treatment of Ulcerative Colitis |
| Q89944347 | Network Properties of Cancer Prognostic Gene Signatures in the Human Protein Interactome |
| Q28539127 | Network analyses reveal pervasive functional regulation between proteases in the human protease web |
| Q26740527 | Network analysis and juvenile idiopathic arthritis (JIA): a new horizon for the understanding of disease pathogenesis and therapeutic target identification |
| Q37185385 | Network analysis identifies an HSP90-central hub susceptible in ovarian cancer |
| Q40870528 | Network analysis identifies protein clusters of functional importance in juvenile idiopathic arthritis |
| Q36254419 | Network analysis of gene lists for finding reproducible prognostic breast cancer gene signatures. |
| Q34243781 | Network analysis of oyster transcriptome revealed a cascade of cellular responses during recovery after heat shock. |
| Q46245433 | Network analysis of pseudogene-gene relationships: from pseudogene evolution to their functional potentials |
| Q47547178 | Network analysis revealed aurora kinase dysregulation in five gynecological types of cancer |
| Q36003921 | Network analysis reveals stage-specific changes in zebrafish embryo development using time course whole transcriptome profiling and prior biological knowledge |
| Q26822484 | Network analysis: a new approach to study endocrine disorders |
| Q37720675 | Network and matrix analysis of the respiratory disease interactome |
| Q38058888 | Network approaches to drug discovery |
| Q33789015 | Network based analyses of gene expression profile of LCN2 overexpression in esophageal squamous cell carcinoma |
| Q38860765 | Network biology approach to epithelial-mesenchymal transition in cancer metastasis: three stage theory |
| Q38630213 | Network design and analysis for multi-enzyme biocatalysis |
| Q30359446 | Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation |
| Q33660753 | Network of microRNAs-mRNAs interactions in pancreatic cancer. |
| Q37226138 | Network pharmacology dissection of multiscale mechanisms of herbal medicines in stage IV gastric adenocarcinoma treatment |
| Q38977512 | Network pharmacology study on the mechanism of traditional Chinese medicine for upper respiratory tract infection |
| Q33688907 | Network pharmacology-based and clinically relevant prediction of the active ingredients and potential targets of Chinese herbs in metastatic breast cancer patients |
| Q87957917 | Network pharmacology-based prediction and verification of the molecular targets and pathways for schisandrin against cerebrovascular disease |
| Q34917499 | Network pharmacology-based prediction of the multi-target capabilities of the compounds in Taohong Siwu decoction, and their application in osteoarthritis |
| Q36245161 | Network pharmacology-based virtual screening of natural products from Clerodendrum species for identification of novel anti-cancer therapeutics. |
| Q42375668 | Network propagation in the cytoscape cyberinfrastructure. |
| Q28652238 | Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters |
| Q28584257 | Network-Based Approach to Identify Potential Targets and Drugs that Promote Neuroprotection and Neurorepair in Acute Ischemic Stroke |
| Q89862185 | Network-Based Genetic Profiling Reveals Cellular Pathway Differences Between Follicular Thyroid Carcinoma and Follicular Thyroid Adenoma |
| Q26799669 | Network-Based Integration of GWAS and Gene Expression Identifies a HOX-Centric Network Associated with Serous Ovarian Cancer Risk |
| Q57816959 | Network-Based Methods for Prediction of Drug-Target Interactions |
| Q43836810 | Network-assisted investigation of antipsychotic drugs and their targets |
| Q21284301 | Network-based analysis of comorbidities risk during an infection: SARS and HIV case studies |
| Q34253973 | Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology. |
| Q53763092 | Network-based expression analysis reveals key genes related to glucocorticoid resistance in infant acute lymphoblastic leukemia. |
| Q37564492 | Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs |
| Q30670472 | Network-based inference framework for identifying cancer genes from gene expression data |
| Q30959744 | Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet |
| Q35653174 | Network-based prediction and knowledge mining of disease genes. |
| Q42034112 | Network-based stratification of tumor mutations |
| Q30931355 | Network-constrained forest for regularized classification of omics data. |
| Q30656759 | NetworkPainter: dynamic intracellular pathway animation in Cytobank |
| Q38383700 | Neural Stem Cells Derived From Human Parthenogenetic Stem Cells Engraft and Promote Recovery in a Nonhuman Primate Model of Parkinsons Disease |
| Q48452350 | Neuroligin-associated microRNA-932 targets actin and regulates memory in the honeybee. |
| Q36510397 | Neurospora crassa transcriptomics reveals oxidative stress and plasma membrane homeostasis biology genes as key targets in response to chitosan |
| Q34656362 | New components of Drosophila leg development identified through genome wide association studies |
| Q28530264 | New insights in Rett syndrome using pathway analysis for transcriptomics data |
| Q34941536 | New network topology approaches reveal differential correlation patterns in breast cancer |
| Q37464859 | Next generation sequencing reveals regulation of distinct Aedes microRNAs during chikungunya virus development |
| Q36972561 | Nicotine exposure and transgenerational impact: a prospective study on small regulatory microRNAs |
| Q46667212 | Nitrogen removal and water microbiota in grass carp culture following supplementation with Bacillus licheniformis BSK-4. |
| Q42267398 | Non-autotrophic methanogens dominate in anaerobic digesters. |
| Q47692589 | Non-branched β-1,3-glucan oligosaccharides trigger immune responses in Arabidopsis |
| Q38453492 | Noncoding and coding transcriptome responses of a marine diatom to phosphate fluctuations |
| Q36344535 | Nonsense-mediated mRNA decay in Tetrahymena is EJC independent and requires a protozoa-specific nuclease |
| Q46405297 | Novel 9-cis/all-trans β-carotene isomerases from plastidic oil bodies in Dunaliella bardawil catalyze the conversion of all-trans to 9-cis β-carotene. |
| Q28535430 | Novel factors in the pathogenesis of psoriasis and potential drug candidates are found with systems biology approach |
| Q96225410 | Novel molecular signatures and potential therapeutics in renal cell carcinomas: Insights from a comparative analysis of subtypes |
| Q39210456 | Novel signatures of cancer-associated fibroblasts. |
| Q30276962 | Nuclear RNA-seq of single neurons reveals molecular signatures of activation |
| Q34651070 | Nuclear cytoplasmic trafficking of proteins is a major response of human fibroblasts to oxidative stress |
| Q34500729 | Nucleotide excision repair/transcription gene defects in the fetus and impaired TFIIH-mediated function in transcription in placenta leading to preeclampsia |
| Q47094520 | Null diffusion-based enrichment for metabolomics data. |
| Q34377238 | NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. |
| Q37103899 | On the origins of hierarchy in complex networks |
| Q34273869 | Ontological phenotype standards for neurogenetics |
| Q27687756 | Open source libraries and frameworks for biological data visualisation: a guide for developers |
| Q35110563 | Optimal eukaryotic 18S and universal 16S/18S ribosomal RNA primers and their application in a study of symbiosis |
| Q49468098 | Oral Microbiota: Microbial Biomarkers of Metabolic Syndrome Independent of Host Genetic Factors. |
| Q36774665 | Oral squamous cell carcinoma: microRNA expression profiling and integrative analyses for elucidation of tumourigenesis mechanism |
| Q40890233 | Origin and evolution of lysyl oxidases |
| Q55070738 | Oscillatory shear stress mediates directional reorganization of actin cytoskeleton and alters differentiation propensity of mesenchymal stem cells. |
| Q37330357 | Ovarian transcriptomic study reveals the differential regulation of miRNAs and lncRNAs related to fecundity in different sheep |
| Q93194899 | Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus |
| Q48096475 | Overexpression of endothelin B receptor in glioblastoma: a prognostic marker and therapeutic target? |
| Q99567368 | Overexpression of novel long intergenic non‑coding RNA LINC02454 is associated with a poor prognosis in papillary thyroid cancer |
| Q64228212 | Overriding FUS autoregulation in mice triggers gain-of-toxic dysfunctions in RNA metabolism and autophagy-lysosome axis |
| Q64096542 | PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination |
| Q30279209 | PADPIN: protein-protein interaction networks of angiogenesis, arteriogenesis, and inflammation in peripheral arterial disease |
| Q34436628 | PAGED: a pathway and gene-set enrichment database to enable molecular phenotype discoveries. |
| Q35212418 | PANET: a GPU-based tool for fast parallel analysis of robustness dynamics and feed-forward/feedback loop structures in large-scale biological networks |
| Q37612167 | PARK2 and proinflammatory/anti-inflammatory cytokine gene interactions contribute to the susceptibility to leprosy: a case-control study of North Indian population |
| Q35630696 | PINA v2.0: mining interactome modules. |
| Q64282162 | PPARγ Interaction with UBR5/ATMIN Promotes DNA Repair to Maintain Endothelial Homeostasis |
| Q34003617 | PPI network analysis of mRNA expression profile of ezrin knockdown in esophageal squamous cell carcinoma |
| Q42070964 | PRD: A protein-RNA interaction database |
| Q91865031 | PRPF40A as a potential diagnostic and prognostic marker is upregulated in pancreatic cancer tissues and cell lines: an integrated bioinformatics data analysis |
| Q35558977 | Parameter optimization for constructing competing endogenous RNA regulatory network in glioblastoma multiforme and other cancers |
| Q36789551 | Parametric Bayesian priors and better choice of negative examples improve protein function prediction |
| Q25296662 | PathVisio 3: an extendable pathway analysis toolbox |
| Q36865881 | PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways |
| Q30831460 | Pathfinder: Visual Analysis of Paths in Graphs. |
| Q38471014 | Pathogenesis analysis of pituitary adenoma based on gene expression profiling |
| Q36680727 | Pathogenic Network Analysis Predicts Candidate Genes for Cervical Cancer. |
| Q36365850 | Pathview Web: user friendly pathway visualization and data integration |
| Q35528258 | Pathway analysis for genetic association studies: to do, or not to do? That is the question |
| Q47321673 | Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D. |
| Q28545279 | Pathway as a pharmacological target for herbal medicines: an investigation from reduning injection |
| Q36222615 | Pathway collages: personalized multi-pathway diagrams |
| Q33941999 | Pathway landscapes and epigenetic regulation in breast cancer and melanoma cell lines. |
| Q33827775 | Pathway reconstruction of airway remodeling in chronic lung diseases: a systems biology approach. |
| Q34625074 | Pathway-based analysis of microarray and RNAseq data using Pathway Processor 2.0. |
| Q52309250 | Patterns of Symbiodinium (Dinophyceae) diversity and assemblages among diverse hosts and the coral reef environment of Lizard Island, Australia. |
| Q51754828 | Peak antibody production is associated with increased oxidative metabolism in an industrially relevant fed-batch CHO cell culture. |
| Q35740537 | Pedican: an online gene resource for pediatric cancers with literature evidence |
| Q36939982 | Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse. |
| Q36020255 | Peroxisomal L-bifunctional enzyme (Ehhadh) is essential for the production of medium-chain dicarboxylic acids |
| Q35195408 | Personal genomes, quantitative dynamic omics and personalized medicine |
| Q29614800 | Personal omics profiling reveals dynamic molecular and medical phenotypes |
| Q28553990 | Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity |
| Q37646786 | Pharmacogenomics of insulin-like growth factor-I generation during GH treatment in children with GH deficiency or Turner syndrome |
| Q64067598 | Pharmacological systems analysis defines EIF4A3 functions in cell-cycle and RNA stress granule formation |
| Q38099521 | PheNetic: network-based interpretation of unstructured gene lists in E. coli |
| Q35196159 | Phenotype specific analyses reveal distinct regulatory mechanism for chronically activated p53 |
| Q35974905 | Phenotype-driven gene target definition in clinical genome-wide sequencing data interpretation. |
| Q34295644 | Phenotypic and transcriptomic response of auxotrophic Mycobacterium avium subsp. paratuberculosis leuD mutant under environmental stress. |
| Q36683045 | Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish |
| Q24619841 | PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse |
| Q35850344 | Phosphoproteome dynamics of Saccharomyces cerevisiae under heat shock and cold stress |
| Q27333727 | Phosphoproteomic analyses reveal signaling pathways that facilitate lytic gammaherpesvirus replication |
| Q37480414 | Phosphoproteomic analysis of anaplastic lymphoma kinase (ALK) downstream signaling pathways identifies signal transducer and activator of transcription 3 as a functional target of activated ALK in neuroblastoma cells. |
| Q35320304 | Phosphoproteomic analysis of basal and therapy-induced adaptive signaling networks in BRAF and NRAS mutant melanoma |
| Q34587218 | Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies |
| Q34732534 | Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences. |
| Q83588692 | Points of view: Networks |
| Q28115374 | Post-transcriptional regulation of BCL2 mRNA by the RNA-binding protein ZFP36L1 in malignant B cells |
| Q41412706 | Potato leafroll virus structural proteins manipulate overlapping, yet distinct protein interaction networks during infection |
| Q94464566 | Potential Molecular Mechanisms of Zhibai Dihuang Wan in Systemic Lupus Erythematosus Based on Network Biology |
| Q42282831 | Potential anti-cancer effect of curcumin in human lung squamous cell carcinoma |
| Q38042459 | Potential blood biomarkers for stroke |
| Q40217303 | Potential roles of microRNAs and their target genes in human multiple myeloma |
| Q33677951 | Power of proteomics in linking oxidative stress and female infertility |
| Q27499052 | Precise generation of systems biology models from KEGG pathways |
| Q89884691 | Predication of hub target genes of differentially expressed microRNAs contributing to Helicobacter pylori infection in gastric non-cancerous tissue |
| Q44105337 | Predicted toxicity of the biofuel candidate 2,5-dimethylfuran in environmental and biological systems |
| Q37108036 | Predicting associations between microRNAs and target genes in breast cancer by bioinformatics analyses |
| Q30573575 | Predicting cancer drug mechanisms of action using molecular network signatures |
| Q37362677 | Predicting cancer-relevant proteins using an improved molecular similarity ensemble approach |
| Q42778934 | Predicting drug-target interactions using probabilistic matrix factorization |
| Q41432293 | Predicting missing expression values in gene regulatory networks using a discrete logic modeling optimization guided by network stable states. |
| Q35014873 | Predicting novel histopathological microlesions in human epileptic brain through transcriptional clustering |
| Q41735685 | Predicting protein-protein interactions between human and hepatitis C virus via an ensemble learning method. |
| Q28539028 | Predicting response to preoperative chemotherapy agents by identifying drug action on modeled microRNA regulation networks |
| Q36853573 | Predicting the Drug Safety for Traditional Chinese Medicine through a Comparative Analysis of Withdrawn Drugs Using Pharmacological Network |
| Q34271399 | Predicting the fission yeast protein interaction network |
| Q34147600 | Predicting the impact of alternative splicing on plant MADS domain protein function |
| Q35685462 | Predicting the in vivo mechanism of action for drug leads using NMR metabolomics |
| Q28252332 | Predicting the potential ankylosing spondylitis-related genes utilizing bioinformatics approaches |
| Q36333565 | Prediction and Characterisation of the System Effects of Aristolochic Acid: A Novel Joint Network Analysis towards Therapeutic and Toxicological Mechanisms |
| Q28488510 | Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks |
| Q42254240 | Prediction and comparison of Salmonella-human and Salmonella-Arabidopsis interactomes |
| Q35098006 | Prediction of CTL epitope, in silico modeling and functional analysis of cytolethal distending toxin (CDT) protein of Campylobacter jejuni |
| Q35881899 | Prediction of Intra-Species Protein-Protein Interactions in Enteropathogens Facilitating Systems Biology Study |
| Q34466596 | Prediction of interactions between viral and host proteins using supervised machine learning methods |
| Q47609745 | Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.). |
| Q58771494 | Predictive classification models and targets identification for betulin derivatives as Leishmania donovani inhibitors |
| Q35103940 | Predictive in silico off-target profiling in drug discovery |
| Q35631178 | Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks |
| Q34370899 | Preeclampsia: a bioinformatics approach through protein-protein interaction networks analysis |
| Q36070956 | Preferentially Expressed Antigen of Melanoma Prevents Lung Cancer Metastasis |
| Q34517523 | Preliminary analysis of salivary microbiome and their potential roles in oral lichen planus |
| Q36620262 | Prescribing pattern of glucose lowering drugs in the United Kingdom in the last decade: a focus on the effects of safety warnings about rosiglitazone |
| Q35758300 | Prior knowledge driven Granger causality analysis on gene regulatory network discovery |
| Q39112724 | Prior knowledge-based approach for associating contaminants with biological effects: A case study in the St. Croix River basin, MN, WI, USA. |
| Q34330634 | Prioritization of candidate genes for attention deficit hyperactivity disorder by computational analysis of multiple data sources |
| Q31144248 | Prioritizing genes responsible for host resistance to influenza using network approaches |
| Q64255671 | Probiotic GG Induces Alterations in Ileal Microbiota With Associated CD3CD19T-betIFNγ Cell Subset Homeostasis in Pigs Challenged With Serovar 4,[5],12:i: |
| Q42853637 | Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014 |
| Q92848751 | Procollagen-lysine, 2-oxoglutarate 5-dioxygenases 1, 2, and 3 are potential prognostic indicators in patients with clear cell renal cell carcinoma |
| Q35045403 | Profiling of Parkin-binding partners using tandem affinity purification |
| Q34983997 | Profiling the dynamics of a human phosphorylome reveals new components in HGF/c-Met signaling. |
| Q51042996 | Progesterone/RANKL is a major regulatory axis in the human breast. |
| Q38834968 | Prognostic significance of NPM1 mutation-modulated microRNA-mRNA regulation in acute myeloid leukemia. |
| Q93167645 | Prognostic value and immune infiltration of novel signatures in clear cell renal cell carcinoma microenvironment |
| Q50528599 | Programming of Plant Leaf Senescence with Temporal and Inter-Organellar Coordination of Transcriptome in Arabidopsis. |
| Q38100239 | Progress in computational studies of host-pathogen interactions |
| Q38915513 | Progress in the Visualization and Mining of Chemical and Target Spaces. |
| Q27681230 | Prospecting for Unannotated Enzymes: Discovery of a 3′,5′-Nucleotide Bisphosphate Phosphatase within the Amidohydrolase Superfamily |
| Q34173524 | Protease-associated cellular networks in malaria parasite Plasmodium falciparum |
| Q35228790 | Proteases in malaria parasites - a phylogenomic perspective |
| Q55486740 | Protective Effects of Peucedanum japonicum Extract against Osteoarthritis in an Animal Model Using a Combined Systems Approach for Compound-Target Prediction. |
| Q91790243 | Protein Kinase A Is Involved in Neuropathic Pain by Activating the p38MAPK Pathway to Mediate Spinal Cord Cell Apoptosis |
| Q52644178 | Protein S-Nitrosylation Controls Glycogen Synthase Kinase 3β Function Independent of its Phosphorylation State. |
| Q34672752 | Protein analysis of atrial fibrosis via label-free proteomics in chronic atrial fibrillation patients with mitral valve disease |
| Q36176247 | Protein carbonylation in a murine model for early alcoholic liver disease |
| Q38681085 | Protein complex analysis: From raw protein lists to protein interaction networks |
| Q36078336 | Protein networks in induced sputum from smokers and COPD patients |
| Q37687443 | Protein profiles associated with context fear conditioning and their modulation by memantine |
| Q34990046 | Protein similarity networks reveal relationships among sequence, structure, and function within the Cupin superfamily |
| Q30422019 | Protein structure networks |
| Q36860728 | Protein-Protein Interactions Inferred from Domain-Domain Interactions in Genogroup II Genotype 4 Norovirus Sequences |
| Q87988033 | Protein-protein interaction network of the marine microalga Tetraselmis subcordiformis: prediction and application for starch metabolism analysis |
| Q38098433 | Protein-protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches |
| Q41295369 | Protein-protein-interaction network organization of the hypusine modification system |
| Q48195058 | Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. |
| Q33792433 | Proteogenomic convergence for understanding cancer pathways and networks |
| Q41744907 | Proteome profiling of human cutaneous leishmaniasis lesion |
| Q37714266 | Proteome-driven elucidation of adaptive responses to combined vitamin E and C deficiency in zebrafish |
| Q39327102 | Proteome-wide Structural Analysis of PTM Hotspots Reveals Regulatory Elements Predicted to Impact Biological Function and Disease |
| Q30002318 | Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells |
| Q36134002 | Proteomic Analysis Reveals Distinct Metabolic Differences Between Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Macrophage Colony Stimulating Factor (M-CSF) Grown Macrophages Derived from Murine Bone Marrow Cells |
| Q30002366 | Proteomic Analysis of Arginine Methylation Sites in Human Cells Reveals Dynamic Regulation During Transcriptional Arrest |
| Q34669870 | Proteomic analyses of serous and endometrioid epithelial ovarian cancers - cases studies - molecular insights of a possible histological etiology of serous ovarian cancer. |
| Q30425653 | Proteomic analysis of Daphnia magna hints at molecular pathways involved in defensive plastic responses |
| Q37355831 | Proteomic analysis of seminal fluid from men exhibiting oxidative stress |
| Q47289623 | Proteomic analysis of six- and twelve-month hippocampus and cerebellum in a murine Down syndrome model |
| Q34468337 | Proteomic analysis of the human cyclin-dependent kinase family reveals a novel CDK5 complex involved in cell growth and migration |
| Q92644520 | Proteomic analysis reflects an environmental alkalinization-coupled pH-dependent mechanism of regulating lignocellulases in Trichoderma guizhouense NJAU4742 |
| Q31044616 | Proteomic data on the nuclear interactome of human MCM9. |
| Q34268051 | Proteomic identification of galectin-3 binding ligands and characterization of galectin-3 proteolytic cleavage in human prostasomes |
| Q92192845 | Proteomics and Non-proteomics Approaches to Study Stable and Transient Protein-Protein Interactions |
| Q38266035 | Proteomics for systems toxicology |
| Q37697953 | Proteomics of a fuzzy organelle: interphase chromatin |
| Q30801268 | Proteomics, metabolomics, and protein interactomics in the characterization of the molecular features of major depressive disorder |
| Q36884872 | Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions |
| Q46283339 | Protocol for Coexpression Network Construction and Stress-Responsive Expression Analysis in Brachypodium |
| Q27902296 | PubChem structure–activity relationship (SAR) clusters |
| Q34409634 | Pythoscape: a framework for generation of large protein similarity networks |
| Q37662014 | P³DB 3.0: From plant phosphorylation sites to protein networks |
| Q31160219 | QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data |
| Q28727231 | Qualitative translation of relations from BioPAX to SBML qual |
| Q101237616 | Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance |
| Q48096114 | Quantitative Assessment of the Effects of Trypsin Digestion Methods on Affinity Purification-Mass Spectrometry-based Protein-Protein Interaction Analysis |
| Q60922853 | Quantitative Proteomics of Potato Leaves Infected with Provides Insights into Coordinated and Altered Protein Expression during Early and Late Disease Stages |
| Q40504844 | Quantitative Resistance to Verticillium Wilt in Medicago truncatula Involves Eradication of the Fungus from Roots and Is Associated with Transcriptional Responses Related to Innate Immunity |
| Q46688722 | Quantitative Variation in Responses to Root Spatial Constraint within Arabidopsis thaliana. |
| Q44358938 | Quantitative global phosphoproteomics of human umbilical vein endothelial cells after activation of the Rap signaling pathway |
| Q27902294 | Quantitative modeling of dose–response and drug combination based on pathway network |
| Q35583355 | Quantitative proteome analysis of temporally resolved phagosomes following uptake via key phagocytic receptors |
| Q36889276 | Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae |
| Q31002156 | Quo vadis computational analysis of PPI data or why the future isn't here yet. |
| Q27976744 | RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource |
| Q36686425 | REGene: a literature-based knowledgebase of animal regeneration that bridge tissue regeneration and cancer. |
| Q39804836 | RETRACTED: Gene expression profiles analysis identifies key genes for acute lung injury in patients with sepsis |
| Q34981538 | RETRACTED: Microarray analysis for differentially expressed genes of patients undergoing total knee arthroplasty with ischemia preconditioning |
| Q33580609 | RNA sequencing analysis reveals transcriptomic variations in tobacco (Nicotiana tabacum) leaves affected by climate, soil, and tillage factors |
| Q47860712 | RNA sequencing indicates that atrazine induces multiple detoxification genes in Daphnia magna and this is a potential source of its mixture interactions with other chemicals |
| Q35906616 | RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations |
| Q58729965 | RNA-Seq analysis of differential gene expression in xylem during the early stages of tension wood formation |
| Q33811109 | RNA-Sequence Analysis Reveals Differentially Expressed Genes (DEGs) in Patients Exhibiting Different Risks of Tumor Metastasis |
| Q41816007 | RNA-seq based gene expression analysis of ovarian granulosa cells exposed to zearalenone in vitro: significance to steroidogenesis |
| Q38432436 | RNA-seq implicates deregulation of the immune system in the pathogenesis of diverticulitis |
| Q39598461 | RNASeq analysis reveals biological processes governing the clinical behaviour of endometrioid and serous endometrial cancers |
| Q34990555 | ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma |
| Q31049998 | ROMA: Representation and Quantification of Module Activity from Target Expression Data |
| Q28680758 | Rac1 is deactivated at integrin activation sites through an IQGAP1-filamin-A-RacGAP1 pathway |
| Q89539330 | Radiation Therapy in Patients With Brain Cancer: Post-proteomics Interpretation |
| Q33865653 | Rank-based miRNA signatures for early cancer detection. |
| Q33784954 | Rapid evolution of phenotypic plasticity and shifting thresholds of genetic assimilation in the nematode Caenorhabditis remanei |
| Q93162012 | Rapid metabolic shifts occur during the transition between hunger and satiety in Drosophila melanogaster |
| Q60238411 | Rationalizing the Formation of Activity Cliffs in Different Compound Data Sets |
| Q92759641 | Re-initiation of Oral Food Intake Following Enteral Nutrition Alters Oral and Gut Microbiota Communities |
| Q64236023 | Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton |
| Q55516151 | Recent developments in synthetic biology and metabolic engineering in microalgae towards biofuel production. |
| Q36228902 | Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks |
| Q64229382 | Reconstruction and Functional Annotation of P311 Protein-Protein Interaction Network Reveals Its New Functions |
| Q35040014 | Reconstruction and analysis of human kidney-specific metabolic network based on omics data |
| Q38438015 | Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana |
| Q43095950 | Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma |
| Q35006921 | Reconstruction of the experimentally supported human protein interactome: what can we learn? |
| Q37668791 | Recurrent patterns of DNA copy number alterations in tumors reflect metabolic selection pressures. |
| Q34244343 | RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations. |
| Q61799924 | Regional protein expression in human Alzheimer's brain correlates with disease severity |
| Q37644032 | Regulation of Nitrogen Metabolism by GATA Zinc Finger Transcription Factors in Yarrowia lipolytica |
| Q24614798 | Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice |
| Q37001758 | Regulatory mechanisms underlying sepsis progression in patients with tumor necrosis factor-α genetic variations |
| Q28542968 | Regulatory network of secondary metabolism in Brassica rapa: insight into the glucosinolate pathway |
| Q35939577 | Relevance of systems biological approach in the differential diagnosis of invasive lobular carcinoma & invasive ductal carcinoma |
| Q42208022 | Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants. |
| Q35015689 | Removing environmental sources of variation to gain insight on symbionts vs. transient microbes in high and low microbial abundance sponges |
| Q43734673 | Representing a set of reconciliations in a compact way. |
| Q26741378 | Representing and querying disease networks using graph databases |
| Q94671866 | Reproducible molecular networking of untargeted mass spectrometry data using GNPS |
| Q37352085 | Research prioritization through prediction of future impact on biomedical science: a position paper on inference-analytics |
| Q34986207 | Resistance and resilience of the forest soil microbiome to logging-associated compaction |
| Q35587093 | Response of the Rumen Microbiota of Sika Deer (Cervus nippon) Fed Different Concentrations of Tannin Rich Plants |
| Q58548299 | Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole Genome Duplication |
| Q30408431 | Retinoic acid signalling regulates the development of tonotopically patterned hair cells in the chicken cochlea |
| Q36328777 | Revealing cancer subtypes with higher-order correlations applied to imaging and omics data |
| Q35593154 | Revealing the Molecular Portrait of Triple Negative Breast Tumors in an Understudied Population through Omics Analysis of Formalin-Fixed and Paraffin-Embedded Tissues. |
| Q50421254 | Review of Statistical Learning Methods in Integrated Omics Studies (An Integrated Information Science). |
| Q37550758 | Review of mass spectrometry-based metabolomics in cancer research |
| Q35733896 | Revisiting Protocols for the NMR Analysis of Bacterial Metabolomes |
| Q94606250 | Revisiting the expression signature of pks15/1 unveils regulatory patterns controlling phenolphtiocerol and phenolglycolipid production in pathogenic mycobacteria |
| Q47650681 | RiceAntherNet: a gene co-expression network for identifying anther and pollen development genes. |
| Q38074339 | Ripples in the pond--using a systems approach to decipher the cellular functions of membrane microdomains |
| Q34612994 | Robustness and backbone motif of a cancer network regulated by miR-17-92 cluster during the G1/S transition. |
| Q52721418 | Role of COL6A3 in colorectal cancer. |
| Q89915720 | Role of miRNA-542-5p in the tumorigenesis of osteosarcoma |
| Q91276841 | Route of immunization defines multiple mechanisms of vaccine-mediated protection against SIV |
| Q30955448 | RulNet: A Web-Oriented Platform for Regulatory Network Inference, Application to Wheat -Omics Data |
| Q97531015 | SARS-CoV-2 contributes to altering the post-transcriptional regulatory networks across human tissues by sponging RNA binding proteins and micro-RNAs |
| Q42355854 | SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme |
| Q42669808 | SGNS2: a compartmentalized stochastic chemical kinetics simulator for dynamic cell populations. |
| Q28645968 | SOCR data dashboard: an integrated big data archive mashing medicare, labor, census and econometric information |
| Q63372115 | SOD1A4Vaggregation alters ubiquitin homeostasis in a cell model of ALS |
| Q26865439 | SPASM and twitch domains in S-adenosylmethionine (SAM) radical enzymes |
| Q35920589 | SYNZIP protein interaction toolbox: in vitro and in vivo specifications of heterospecific coiled-coil interaction domains |
| Q90411159 | SaHsfA4c From Sedum alfredii Hance Enhances Cadmium Tolerance by Regulating ROS-Scavenger Activities and Heat Shock Proteins Expression |
| Q64087635 | Saponin-Induced Shifts in the Rumen Microbiome and Metabolome of Young Cattle |
| Q46130908 | ScaffViz: visualizing metagenome assemblies. |
| Q35880992 | Scope and limitations of yeast as a model organism for studying human tissue-specific pathways |
| Q42160706 | Screening Driving Transcription Factors in the Processing of Gastric Cancer |
| Q95265907 | Screening and Identification of Differentially Expressed Genes Expressed among Left and Right Colon Adenocarcinoma |
| Q90401764 | Screening and Identification of Potential Prognostic Biomarkers in Adrenocortical Carcinoma |
| Q90705789 | Screening and authentication of molecular markers in malignant glioblastoma based on gene expression profiles |
| Q90216064 | Screening and identification of biomarkers for systemic sclerosis via microarray technology |
| Q90705840 | Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis |
| Q40049662 | Screening and identification of key biomarkers in hepatocellular carcinoma: Evidence from bioinformatic analysis |
| Q90706093 | Screening and identification of key biomarkers in lung squamous cell carcinoma by bioinformatics analysis |
| Q38459934 | Screening feature genes of osteosarcoma with DNA microarray: a bioinformatic analysis |
| Q38438061 | Screening for potential genes associated with bone overgrowth after mid-shaft femur fracture in a rat model |
| Q49733370 | Screening of FOXD3 targets in lung cancer via bioinformatics analysis. |
| Q41697046 | Screening of miRNA profiles and construction of regulation networks in early and late lactation of dairy goat mammary glands. |
| Q31032714 | Screening of potential biomarkers for cholangiocarcinoma by integrated analysis of microarray data sets |
| Q39064384 | Screening of potential biomarkers for prenatal diagnosis of trisomy 21. |
| Q55101166 | Screening of potential biomarkers in uterine leiomyomas disease via gene expression profiling analysis. |
| Q35848462 | Screening of potential diagnostic markers and therapeutic targets against colorectal cancer |
| Q38929219 | Screening of potential gene markers for predicting carotid atheroma plaque formation using bioinformatics approaches |
| Q35695398 | Screening of potential target genes for cataract by analyzing mRNA expression profile of mouse Hsf4-null lens |
| Q92078840 | Screening, identification and validation of CCND1 and PECAM1/CD31 for predicting prognosis in renal cell carcinoma patients |
| Q50115647 | SeaBase: a multispecies transcriptomic resource and platform for gene network inference. |
| Q35601251 | Seasonal variations of marine protist community structure based on taxon-specific traits using the eastern English Channel as a model coastal system. |
| Q47098418 | Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels |
| Q49904673 | Selection of biomarkers for HIV-1 latency by integrated analysis. |
| Q28477804 | Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis |
| Q34257086 | Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes |
| Q30677973 | Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallop Chlamys farreri |
| Q55416554 | Sex Determination in Ceratopteris richardii Is Accompanied by Transcriptome Changes That Drive Epigenetic Reprogramming of the Young Gametophyte. |
| Q92163655 | Sex-Biased lncRNAs Inversely Correlate With Sex-Opposite Gene Coexpression Networks in Diversity Outbred Mouse Liver |
| Q123351269 | Shallow- and Deep-Water Ophiura Species Produce a Panel of Chlorin Compounds with Potent Photodynamic Anticancer Activities |
| Q36278135 | Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome |
| Q98177423 | Shensong Yangxin Protects Against Metabolic Syndrome-Induced Ventricular Arrhythmias by Inhibiting Electrical Remodeling |
| Q38244113 | Signal interactions in the regulation of root nitrate uptake |
| Q28678654 | Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research |
| Q41319140 | Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission |
| Q38430048 | Similarities between plant traits based on their connection to underlying gene functions. |
| Q58563392 | Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development |
| Q37577068 | Single nucleotide polymorphisms in microRNA binding sites of oncogenes: implications in cancer and pharmacogenomics |
| Q36202108 | Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal |
| Q35926244 | Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis. |
| Q90496930 | SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics |
| Q37428859 | Sirtuin 7 plays a role in ribosome biogenesis and protein synthesis |
| Q38450509 | Sjögren's syndrome patients with ectopic germinal centers present with a distinct salivary proteome. |
| Q37487702 | Skeletal muscle characteristics are preserved in hTERT/cdk4 human myogenic cell lines |
| Q91739024 | Slow skeletal muscle troponin T, titin and myosin light chain 3 are candidate prognostic biomarkers for Ewing's sarcoma |
| Q35006395 | Small RNA profiling of influenza A virus-infected cells identifies miR-449b as a regulator of histone deacetylase 1 and interferon beta |
| Q36838683 | Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes |
| Q54964433 | Small extracellular vesicles and their miRNA cargo are anti-apoptotic members of the senescence-associated secretory phenotype. |
| Q36527783 | SncRNA (microRNA &snoRNA) opposite expression pattern found in multiple sclerosis relapse and remission is sex dependent. |
| Q34470522 | Social insect colony as a biological regulatory system: modelling information flow in dominance networks. |
| Q30417547 | Social odors conveying dominance and reproductive information induce rapid physiological and neuromolecular changes in a cichlid fish |
| Q38154674 | Software platforms to facilitate reconstructing genome-scale metabolic networks |
| Q35586971 | Soil microbiome responses to the short-term effects of Amazonian deforestation. |
| Q36409137 | Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle |
| Q41328427 | SoxNeuro orchestrates central nervous system specification and differentiation in Drosophila and is only partially redundant with Dichaete |
| Q37487752 | Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network |
| Q35019290 | Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota |
| Q43413893 | Sperm nuclear DNA fragmentation rate is associated with differential protein expression and enriched functions in human seminal plasma |
| Q29030218 | Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations |
| Q30858730 | Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data. |
| Q47221306 | Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks |
| Q35113601 | Stress-induced endogenous siRNAs targeting regulatory intron sequences in Brachypodium. |
| Q33645207 | Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions |
| Q28660142 | Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions |
| Q92071362 | Strong Seasonality in Arctic Estuarine Microbial Food Webs |
| Q40075521 | Structural analysis of dihydrofolate reductases enables rationalization of antifolate binding affinities and suggests repurposing possibilities. |
| Q27675935 | Structural and Mechanistic Characterization of l -Histidinol Phosphate Phosphatase from the Polymerase and Histidinol Phosphatase Family of Proteins |
| Q111629395 | Structural and functional diversification of HORMA domain-containing proteins |
| Q57751794 | Structural and spectroscopic analyses of the sporulation killing factor biosynthetic enzyme SkfB, a bacterial AdoMet radical sactisynthase |
| Q51414693 | Structural pliability adjacent to the kinase domain highlights contribution of FAK1 IDRs to cytoskeletal remodeling. |
| Q27678327 | Structure and Catalytic Mechanism of LigI: Insight into the Amidohydrolase Enzymes of cog3618 and Lignin Degradation |
| Q27008867 | Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review |
| Q27678153 | Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function |
| Q36113308 | Structuring evolution: biochemical networks and metabolic diversification in birds |
| Q34667732 | Subcellular proteomics reveals a role for nucleo-cytoplasmic trafficking at the DNA replication origin activation checkpoint |
| Q30152968 | Substrate, product, and cofactor: The extraordinarily flexible relationship between the CDE superfamily and heme |
| Q38451761 | Sunitinib activates Axl signaling in renal cell cancer. |
| Q34413394 | Supertrees Based on the Subtree Prune-and-Regraft Distance |
| Q42716637 | Surprise maximization reveals the community structure of complex networks |
| Q37408736 | Swimming upstream: identifying proteomic signals that drive transcriptional changes using the interactome and multiple "-omics" datasets |
| Q38458236 | SwissPalm: Protein Palmitoylation database. |
| Q30577130 | SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations |
| Q35235194 | Synergistic transcriptional and post-transcriptional regulation of ESC characteristics by core pluripotency transcription factors in protein-protein interaction networks |
| Q51504398 | Synthesis and regulation of chlorogenic acid in potato: Rerouting phenylpropanoid flux in HQT-silenced lines. |
| Q42373475 | System Pharmacology-Based Dissection of the Synergistic Mechanism of Huangqi and Huanglian for Diabetes Mellitus |
| Q35448639 | System-level insights into the cellular interactome of a non-model organism: inferring, modelling and analysing functional gene network of soybean (Glycine max). |
| Q51738057 | System-level multi-target drug discovery from natural products with applications to cardiovascular diseases. |
| Q38440384 | Systematic Analysis of Protein Interaction Network Associated with Azoospermia. |
| Q35895321 | Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori |
| Q39631090 | Systematic Identification of Anti-Fungal Drug Targets by a Metabolic Network Approach |
| Q34442328 | Systematic analysis of the phosphoproteome and kinase-substrate networks in the mouse testis |
| Q37325992 | Systematic analysis of the polyphenol metabolome using the Phenol-Explorer database |
| Q41197386 | Systematic analysis to identify a key role of CDK1 in mediating gene interaction networks in cervical cancer development |
| Q36278969 | Systematic comparison of lncRNAs with protein coding mRNAs in population expression and their response to environmental change. |
| Q28478506 | Systematic drug repositioning based on clinical side-effects |
| Q91975781 | Systematic expression analysis of WEE family kinases reveals the importance of PKMYT1 in breast carcinogenesis |
| Q48158859 | Systematic identification of latent disease-gene associations from PubMed articles |
| Q30422333 | Systematic identification of synergistic drug pairs targeting HIV |
| Q64230204 | Systematic identification of target set-dependent activity cliffs |
| Q57156129 | Systematic identification of the key candidate genes in breast cancer stroma |
| Q42050971 | Systematic prediction of drug combinations based on clinical side-effects |
| Q49186985 | Systematic target function annotation of human transcription factors. |
| Q34583854 | Systematic transcriptome wide analysis of lncRNA-miRNA interactions |
| Q47834909 | Systematic-analysis of mRNA expression profiles in skeletal muscle of patients with type II diabetes: The glucocorticoid was central in pathogenesis |
| Q99711622 | Systemic Expression Analysis Reveals Prognostic Significance of WIPI3 in Hepatocellular Carcinoma |
| Q33617957 | Systemic inflammatory response to smoking in chronic obstructive pulmonary disease: evidence of a gender effect |
| Q90162435 | Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs |
| Q39002860 | Systems Biology Approach in Hypertension Research |
| Q41265082 | Systems Chemo-Biology and Transcriptomic Meta-Analysis Reveal the Molecular Roles of Bioactive Lipids in Cardiomyocyte Differentiation |
| Q37009081 | Systems Nutrigenomics Reveals Brain Gene Networks Linking Metabolic and Brain Disorders. |
| Q33809040 | Systems Pharmacological Approach of Pulsatillae Radix on Treating Crohn's Disease |
| Q47145365 | Systems Pharmacological Approach to the Effect of Bulsu-san Promoting Parturition. |
| Q35697884 | Systems Pharmacology Dissecting Holistic Medicine for Treatment of Complex Diseases: An Example Using Cardiocerebrovascular Diseases Treated by TCM |
| Q55420993 | Systems Pharmacology Dissection of Traditional Chinese Medicine Wen-Dan Decoction for Treatment of Cardiovascular Diseases. |
| Q36889767 | Systems Pharmacology Uncovers the Multiple Mechanisms of Xijiao Dihuang Decoction for the Treatment of Viral Hemorrhagic Fever |
| Q92156124 | Systems Pharmacology and Microbiome Dissection of Shen Ling Bai Zhu San Reveal Multiscale Treatment Strategy for IBD |
| Q35105277 | Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses |
| Q39374600 | Systems biological approach to investigate the lack of familial link between Down's Syndrome & Neural Tube Disorders |
| Q37972867 | Systems biology analysis of protein-drug interactions. |
| Q42872718 | Systems biology analysis of the endocannabinoid system reveals a scale-free network with distinct roles for anandamide and 2-arachidonoylglycerol |
| Q38035735 | Systems biology for molecular life sciences and its impact in biomedicine |
| Q35864807 | Systems biology of fungal infection. |
| Q49190788 | Systems pharmacology analysis of synergy of TCM: an example using saffron formula. |
| Q35075939 | Systems pharmacology augments drug safety surveillance |
| Q30423829 | Systems pharmacology uncovers Janus functions of botanical drugs: activation of host defense system and inhibition of influenza virus replication. |
| Q36365175 | Systems pharmacology-based approach for dissecting the active ingredients and potential targets of the Chinese herbal Bufei Jianpi formula for the treatment of COPD. |
| Q90068483 | Systems pharmacology-based approach for dissecting the mechanisms of pyrazine components in Maotai liquor |
| Q36164552 | Systems pharmacology-based dissection of mechanisms of Chinese medicinal formula Bufei Yishen as an effective treatment for chronic obstructive pulmonary disease |
| Q57485875 | Systems pharmacology-based investigation of Sanwei Ganjiang Prescription: related mechanisms in liver injury |
| Q36506826 | Systems-Pharmacology Dissection of Traditional Chinese Medicine Compound Saffron Formula Reveals Multi-scale Treatment Strategy for Cardiovascular Diseases |
| Q38152375 | Systems-based understanding of pharmacological responses with combinations of multidisciplinary methodologies |
| Q33855179 | Systems-level analysis of innate immunity |
| Q24299250 | Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass |
| Q38668242 | T cell receptor repertoires of mice and humans are clustered in similarity networks around conserved public CDR3 sequences |
| Q34704696 | TNA4OptFlux--a software tool for the analysis of strain optimization strategies |
| Q38429170 | TNF-alpha -308G/A and -238G/A polymorphisms and its protein network associated with type 2 diabetes mellitus |
| Q93125386 | TPM2 as a potential predictive biomarker for atherosclerosis |
| Q21133944 | TRIP database 2.0: a manually curated information hub for accessing TRP channel interaction network |
| Q28728713 | Taking the next step: building an Arabidopsis information portal |
| Q36133978 | Targeted Proteomics-Driven Computational Modeling of Macrophage S1P Chemosensing |
| Q34335134 | Targeted recovery of novel phylogenetic diversity from next-generation sequence data |
| Q38958030 | Targeting BRCA1-BER deficient breast cancer by ATM or DNA-PKcs blockade either alone or in combination with cisplatin for personalized therapy |
| Q41995777 | Taxonomic and Functional Analyses of the Supragingival Microbiome from Caries-Affected and Caries-Free Hosts. |
| Q90376008 | Temporal analysis of Arabidopsis genes activated by Eucalyptus grandis NAC transcription factors associated with xylem fibre and vessel development |
| Q39783321 | Temporal and spatial constraints on community assembly during microbial colonization of wood in seawater |
| Q39067108 | Temporal dynamics of microbial communities in microcosms in response to pollutants |
| Q34746430 | Temporal genomic evolution of bird sex chromosomes |
| Q39282042 | Temporal profiling of lapatinib-suppressed phosphorylation signals in EGFR/HER2 pathways. |
| Q30002320 | Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation |
| Q34830155 | Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight. |
| Q33551834 | Tenofovir and adefovir down-regulate mitochondrial chaperone TRAP1 and succinate dehydrogenase subunit B to metabolically reprogram glucose metabolism and induce nephrotoxicity |
| Q34617517 | Tetrahymena functional genomics database (TetraFGD): an integrated resource for Tetrahymena functional genomics. |
| Q90639317 | The "Neglected Viruses" of Taihu: Abundant Transcripts for Viruses Infecting Eukaryotes and Their Potential Role in Phytoplankton Succession |
| Q27975975 | The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies |
| Q55270064 | The Active Components of Fuzheng Huayu Formula and Their Potential Mechanism of Action in Inhibiting the Hepatic Stellate Cells Viability - A Network Pharmacology and Transcriptomics Approach. |
| Q35940731 | The Arabidopsis Domain of Unknown Function 1218 (DUF1218) Containing Proteins, MODIFYING WALL LIGNIN-1 and 2 (At1g31720/MWL-1 and At4g19370/MWL-2) Function Redundantly to Alter Secondary Cell Wall Lignin Content |
| Q36119914 | The Arabidopsis HEI10 is a new ZMM protein related to Zip3 |
| Q54574766 | The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health. |
| Q33363819 | The Arabidopsis phytohormone crosstalk network involves a consecutive metabolic route and circular control units of transcription factors that regulate enzyme-encoding genes |
| Q28280503 | The BioGRID interaction database: 2013 update |
| Q41676275 | The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes |
| Q28727777 | The Cell Collective: toward an open and collaborative approach to systems biology. |
| Q41022914 | The Correlation between Chemical Structures and Antioxidant, Prooxidant, and Antitrypanosomatid Properties of Flavonoids. |
| Q41967577 | The Cytoscape app article collection. |
| Q35747765 | The Diversity and Co-occurrence Patterns of N₂-Fixing Communities in a CO₂-Enriched Grassland Ecosystem |
| Q28533887 | The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence |
| Q46341974 | The Gut Bacterial Community Composition of Wild Cervus albirostris (White-Lipped Deer) Detected by the 16S Ribosomal RNA Gene Sequencing |
| Q42772702 | The HPV E2-Host Protein-Protein Interactions: A Complex Hijacking of the Cellular Network. |
| Q89539336 | The Highlighted Role of GAPDH and Nitric-Oxide Synthase Regulator Activity in Proton Beam Irradiated Melanoma BLM Cells |
| Q40848638 | The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide. |
| Q47098548 | The Metallophore Staphylopine Enables Staphylococcus aureus To Compete with the Host for Zinc and Overcome Nutritional Immunity. |
| Q35206852 | The Notch signalling system: recent insights into the complexity of a conserved pathway |
| Q42320718 | The OncoPPi network of cancer-focused protein-protein interactions to inform biological insights and therapeutic strategies |
| Q52689033 | The Pathoconnectivity Profile of Alzheimer's Disease: A Morphometric Coalteration Network Analysis. |
| Q36745136 | The Proteomic Profile of Deleted in Breast Cancer 1 (DBC1) Interactions Points to a Multifaceted Regulation of Gene Expression |
| Q40212847 | The RNA-binding protein tristetraprolin schedules apoptosis of pathogen-engaged neutrophils during bacterial infection |
| Q46284233 | The Role of Alternative Splicing and Differential Gene Expression in Cichlid Adaptive Radiation |
| Q91878601 | The Role of Serine Peptidase Inhibitor Kazal Type 13 (SPINK13) as a Clinicopathological and Prognostic Biomarker in Patients with Clear Cell Renal Cell Carcinoma |
| Q38642362 | The Sharpin interactome reveals a role for Sharpin in lamellipodium formation via the Arp2/3 complex. |
| Q34763578 | The UCSC Interaction Browser: multidimensional data views in pathway context |
| Q50074647 | The WUSCHEL-related homeobox 5a (PtoWOX5a) is involved in adventitious root development in poplar. |
| Q95642719 | The biomarkers of key miRNAs and target genes associated with acute myocardial infarction |
| Q44768496 | The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants |
| Q64096613 | The combination of neoantigen quality and T lymphocyte infiltrates identifies glioblastomas with the longest survival |
| Q34917226 | The conditional nature of genetic interactions: the consequences of wild-type backgrounds on mutational interactions in a genome-wide modifier screen |
| Q94467101 | The connectome of the Caenorhabditis elegans pharynx |
| Q30360131 | The construction of an amino acid network for understanding protein structure and function. |
| Q36305609 | The core regulation module of stress-responsive regulatory networks in yeast |
| Q34110104 | The discovery of putative urine markers for the specific detection of prostate tumor by integrative mining of public genomic profiles |
| Q35100249 | The effect of smoking on DNA methylation of peripheral blood mononuclear cells from African American women |
| Q37049083 | The effects of graded levels of calorie restriction: VI. Impact of short-term graded calorie restriction on transcriptomic responses of the hypothalamic hunger and circadian signaling pathways. |
| Q35081193 | The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin |
| Q34400081 | The evolution of lncRNA repertoires and expression patterns in tetrapods |
| Q38875156 | The feasibility of genome-scale biological network inference using Graphics Processing Units |
| Q24294822 | The functional interactome landscape of the human histone deacetylase family |
| Q41848711 | The functional interactome of PYHIN immune regulators reveals IFIX is a sensor of viral DNA. |
| Q24304999 | The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets |
| Q34229719 | The functions of Mediator in Candida albicans support a role in shaping species-specific gene expression |
| Q30982358 | The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms |
| Q34154866 | The gene expression analysis of blood reveals S100A11 and AQP9 as potential biomarkers of infective endocarditis |
| Q28546777 | The genetic architecture of the genome-wide transcriptional response to ER stress in the mouse |
| Q26825782 | The genetics of multiple sclerosis: review of current and emerging candidates |
| Q36858753 | The homeoprotein DLX3 and tumor suppressor p53 co-regulate cell cycle progression and squamous tumor growth |
| Q33892957 | The human plasma membrane peripherome: visualization and analysis of interactions. |
| Q36671437 | The ignored diversity: complex bacterial communities in intensive care units revealed by 16S pyrosequencing |
| Q51747773 | The impact of anti-apoptotic gene Bcl-2∆ expression on CHO central metabolism. |
| Q35740438 | The impact of classification of interest on predictive toxicogenomics |
| Q92688326 | The impact of skin care products on skin chemistry and microbiome dynamics |
| Q34747073 | The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis |
| Q34436307 | The influence of iron on the proteomic profile of Chromobacterium violaceum |
| Q36129611 | The ins and outs of algal metal transport |
| Q38473775 | The integrated disease network |
| Q28468675 | The involvement of cholesterol in sepsis and tolerance to lipopolysaccharide highlighted by the transcriptome analysis of zebrafish (Danio rerio) |
| Q92052257 | The mTOR Signaling Pathway Activity and Vitamin D Availability Control the Expression of Most Autism Predisposition Genes |
| Q90163654 | The miRNA-mRNA Networks Involving Abnormal Energy and Hormone Metabolisms Restrict Tillering in a Wheat Mutant dmc |
| Q28080473 | The microRNA-183 cluster: the family that plays together stays together |
| Q24293871 | The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease |
| Q33766788 | The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii |
| Q64120564 | The promising novel biomarkers and candidate small molecule drugs in kidney renal clear cell carcinoma: Evidence from bioinformatics analysis of high-throughput data |
| Q28482305 | The protein architecture of human secretory vesicles reveals differential regulation of signaling molecule secretion by protein kinases |
| Q42439497 | The role of TIR-NBS and TIR-X proteins in plant basal defense responses |
| Q34541299 | The role of insulin C-peptide in the coevolution analyses of the insulin signaling pathway: a hint for its functions |
| Q93064585 | The role of microRNA-148a and downstream DLGAP1 on the molecular regulation and tumor progression on human glioblastoma |
| Q28607224 | The role of ontologies in biological and biomedical research: a functional perspective |
| Q39029366 | The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process |
| Q34985089 | The saliva microbiome of Pan and Homo |
| Q89683727 | The signature of pharmaceutical sensitivity based on ctDNA mutation in eleven cancers |
| Q34416881 | The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome |
| Q50880891 | The study on serum and urine of renal interstitial fibrosis rats induced by unilateral ureteral obstruction based on metabonomics and network analysis methods. |
| Q34387588 | The transcription profile of Tax-3 is more similar to Tax-1 than Tax-2: insights into HTLV-3 potential leukemogenic properties |
| Q30410818 | The transcriptome of utricle hair cell regeneration in the avian inner ear. |
| Q27937658 | The yeast SR-like protein Npl3 links chromatin modification to mRNA processing |
| Q38364665 | Therapeutic opportunities within the DNA damage response |
| Q60047515 | Thermal Modulation of Monoamine Levels Influence Fish Stress and Welfare |
| Q50804818 | Thinking Through Networks: A Review of Formal Network Methods in Archaeology |
| Q37036682 | Thiouracil cross-linking mass spectrometry: a cell-based method to identify host factors involved in viral amplification |
| Q38716887 | Time-resolved Phosphoproteome Analysis of Paradoxical RAF Activation Reveals Novel Targets of ERK. |
| Q51062895 | Tissue damage in organic rainbow trout muscle investigated by proteomics and bioinformatics. |
| Q49167671 | To Explore the Mechanism of the GRM4 Gene in Osteosarcoma by RNA Sequencing and Bioinformatics Approach. |
| Q28656008 | TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model |
| Q37650434 | Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists |
| Q37643647 | Topological and functional analysis of nonalcoholic steatohepatitis through protein interaction mapping |
| Q34427589 | Topological and functional properties of the small GTPases protein interaction network |
| Q97643136 | Topological and system-level protein interaction network (PIN) analyses to deduce molecular mechanism of curcumin |
| Q43704065 | Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network |
| Q58714427 | Topological motifs populate complex networks through grouped attachment |
| Q31003287 | Towards a Hierarchical Strategy to Explore Multi-Scale IP/MS Data for Protein Complexes |
| Q33840498 | Towards a molecular characterization of autism spectrum disorders: an exome sequencing and systems approach. |
| Q36150447 | Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes |
| Q30653362 | Towards systematic discovery of signaling networks in budding yeast filamentous growth stress response using interventional phosphorylation data |
| Q34436971 | Tracing dynamic biological processes during phase transition |
| Q36185272 | Transcription factor and miRNA co-regulatory network reveals shared and specific regulators in the development of B cell and T cell |
| Q34104722 | Transcription factor regulation and chromosome dynamics during pseudohyphal growth |
| Q92494186 | Transcriptional Regulatory Network of GA Floral Induction Pathway in LA Hybrid Lily |
| Q96136255 | Transcriptional analyses reveal the molecular mechanism governing shade tolerance in the invasive plant Solidago canadensis |
| Q40915926 | Transcriptional and metabolic alternations rebalance wheat grain storage protein accumulation under variable nitrogen and sulfur supply |
| Q34172344 | Transcriptional evidence for inferred pattern of pollen tube-stigma metabolic coupling during pollination |
| Q37689748 | Transcriptional landscapes of emerging autoimmunity: transient aberrations in the targeted tissue's extracellular milieu precede immune responses in Sjögren's syndrome |
| Q36597736 | Transcriptional profiling and muscle cross-section analysis reveal signs of ischemia reperfusion injury following total knee arthroplasty with tourniquet |
| Q34943024 | Transcriptional profiling reveals progeroid Ercc1(-/Δ) mice as a model system for glomerular aging |
| Q33870827 | Transcriptional regulation and spatial interactions of head-to-head genes |
| Q35644801 | Transcriptional regulation and the diversification of metabolism in wine yeast strains. |
| Q31129352 | Transcriptional regulation of lineage commitment--a stochastic model of cell fate decisions |
| Q47656886 | Transcriptional regulation on the gene expression signature in combined allergic rhinitis and asthma syndrome |
| Q34994324 | Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte Enterobacter sp. 638 |
| Q37134200 | Transcriptome Analysis Reveals Candidate Genes involved in Blister Blight defense in Tea (Camellia sinensis (L) Kuntze) |
| Q26766287 | Transcriptome Analysis in Domesticated Species: Challenges and Strategies |
| Q38838955 | Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance |
| Q35784721 | Transcriptome Profiling of Pediatric Core Binding Factor AML. |
| Q40513608 | Transcriptome Sequencing to Identify Transcription Factor Regulatory Network and Alternative Splicing in Endothelial Cells Under VEGF Stimulation |
| Q40181227 | Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging. |
| Q41045582 | Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations |
| Q91286879 | Transcriptome analysis of miRNA and mRNA in the livers of pigs with highly diverged backfat thickness |
| Q34572085 | Transcriptome analysis reveals genes commonly induced by Botrytis cinerea infection, cold, drought and oxidative stresses in Arabidopsis |
| Q89579243 | Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain |
| Q37378081 | Transcriptome and small RNA deep sequencing reveals deregulation of miRNA biogenesis in human glioma |
| Q34550198 | Transcriptome comparison and gene coexpression network analysis provide a systems view of citrus response to 'Candidatus Liberibacter asiaticus' infection. |
| Q36012499 | Transcriptome landscape of the human placenta |
| Q34784966 | Transcriptome meta-analysis reveals a central role for sex steroids in the degeneration of hippocampal neurons in Alzheimer's disease |
| Q34589459 | Transcriptome profiling of microRNA by Next-Gen deep sequencing reveals known and novel miRNA species in the lipid fraction of human breast milk |
| Q53479853 | Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling. |
| Q36619854 | Transcriptome-wide expansion of non-coding regulatory switches: evidence from co-occurrence of Alu exonization, antisense and editing |
| Q64121062 | Transcriptomic Analysis of Coding Genes and Non-Coding RNAs Reveals Complex Regulatory Networks Underlying the Black Back and White Belly Coat Phenotype in Chinese Wuzhishan Pigs |
| Q28540234 | Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage |
| Q64260450 | Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress |
| Q47874649 | Transcriptomic plasticity in brown adipose tissue contributes to an enhanced capacity for nonshivering thermogenesis in deer mice. |
| Q64086294 | Transcriptomic profiling identifies differentially expressed genes associated with programmed cell death of nucellar cells in Ginkgo biloba L |
| Q36073274 | Transcriptomic response of yeast cells to ATX1 deletion under different copper levels |
| Q55252828 | Transcriptomics and machine learning predict diagnosis and severity of growth hormone deficiency. |
| Q35950195 | Transcriptomics profiling of human SGBS adipogenesis |
| Q34686706 | Transplantation-associated long-term immunosuppression promotes oral colonization by potentially opportunistic pathogens without impacting other members of the salivary bacteriome. |
| Q45400516 | Transposon variation by order during allopolyploidisation between Brassica oleracea and Brassica rapa. |
| Q33809775 | Traumatic Brain Injury Induces Genome-Wide Transcriptomic, Methylomic, and Network Perturbations in Brain and Blood Predicting Neurological Disorders |
| Q93356995 | Trends in anesthesiology research: a machine learning approach to theme discovery and summarization |
| Q34453174 | Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia |
| Q26828513 | Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression |
| Q50892087 | Two functionally distinct NADP+-dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus. |
| Q46451808 | Unambiguous identification and discovery of bacterial siderophores by direct injection 21 Tesla Fourier transform ion cyclotron resonance mass spectrometry |
| Q38494780 | Unbiased label-free quantitative proteomic profiling and enriched proteomic pathways in seminal plasma of adult men before and after varicocelectomy. |
| Q36050271 | Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models |
| Q30425881 | Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma |
| Q42200249 | Uncovering potential Drug Targets for Tuberculosis using Protein Networks |
| Q41878629 | Uncovering the co-evolutionary network among prokaryotic genes |
| Q59811770 | Uncovering the mechanism of Maxing Ganshi Decoction on asthma from a systematic perspective: A network pharmacology study |
| Q38477847 | Uncovering the pathogenesis and identifying novel targets of pancreatic cancer using bioinformatics approach |
| Q102141606 | Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish |
| Q28830418 | Understanding the diverse functions of Huatan Tongluo Fang on rheumatoid arthritis from a pharmacological perspective |
| Q40238740 | Understanding the polypharmacological anticancer effects of Xiao Chai Hu Tang via a computational pharmacological model |
| Q38491933 | UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks |
| Q34549546 | Unique Bacteria Community Composition and Co-occurrence in the Milk of Different Ruminants |
| Q47240762 | Unique metabolomic signature associated with hepatorenal dysfunction and mortality in cirrhosis. |
| Q37239531 | Unraveling the sperm proteome and post-genomic pathways associated with sperm nuclear DNA fragmentation |
| Q38440784 | Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based proteomics |
| Q47818779 | Unravelling the biology of chromatin in health and cancer using proteomic approaches |
| Q60916613 | Unveiling Active Constituents and Potential Targets Related to the Hematinic Effect of Steamed Panax notoginseng Using Network Pharmacology Coupled With Multivariate Data Analyses |
| Q53622866 | Unveiling differentially expressed genes upon regulation of transcription factors in sepsis. |
| Q38172265 | Urinary biomarkers of physical activity: candidates and clinical utility. |
| Q35380506 | Urine glycoprotein profile reveals novel markers for chronic kidney disease |
| Q47329099 | Use of methylation profiling to identify significant differentially methylated genes in bone marrow mesenchymal stromal cells from acute myeloid leukemia |
| Q28487019 | Use of natural products as chemical library for drug discovery and network pharmacology |
| Q36795657 | Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint |
| Q33839060 | Using Coexpression Protein Interaction Network Analysis to Identify Mechanisms of Danshensu Affecting Patients with Coronary Heart Disease |
| Q28818019 | Using Drugs as Molecular Probes: A Computational Chemical Biology Approach in Neurodegenerative Diseases |
| Q36741597 | Using Molecular Networking for Microbial Secondary Metabolite Bioprospecting. |
| Q39095740 | Using computational strategies to predict potential drugs for nasopharyngeal carcinoma |
| Q27336465 | Using existing drugs as leads for broad spectrum anthelmintics targeting protein kinases |
| Q28272656 | Using gene-network landscape to dissect genotype effects of TCF7L2 genetic variant on diabetes and cardiovascular risk |
| Q38992135 | Using in vivo biotinylated ubiquitin to describe a mitotic exit ubiquitome from human cells. |
| Q41119561 | Using neighborhood cohesiveness to infer interactions between protein domains |
| Q36103939 | Using network analysis to discern compositional patterns in ultrahigh-resolution mass spectrometry data of dissolved organic matter |
| Q30571648 | Using networks to understand medical data: the case of Class III malocclusions |
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