| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1014842608 |
| P356 | DOI | 10.1038/ISMEJ.2013.199 |
| P932 | PMC publication ID | 3960540 |
| P698 | PubMed publication ID | 24196323 |
| P50 | author | Jed A. Fuhrman | Q87348835 |
| David A. Caron | Q113712680 | ||
| P2093 | author name string | Diane Y Kim | |
| Cheryl-Emiliane T Chow | |||
| Rohan Sachdeva | |||
| P2860 | cites work | Cytoscape: a software environment for integrated models of biomolecular interaction networks | Q24515682 |
| Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere | Q24530217 | ||
| Prochlorococcus, a marine photosynthetic prokaryote of global significance | Q24548557 | ||
| Integration of biological networks and gene expression data using Cytoscape | Q28681323 | ||
| Strong, long-term temporal dynamics of an ecological network | Q28742575 | ||
| Cytoscape 2.8: new features for data integration and network visualization | Q29547471 | ||
| Efficient statistical significance approximation for local similarity analysis of high-throughput time series data | Q30578400 | ||
| Marine viruses and their biogeochemical and ecological effects | Q30720057 | ||
| Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series | Q33221828 | ||
| A dynamic programming algorithm for binning microbial community profiles | Q33237785 | ||
| Distribution and abundance of uncultured heterotrophic flagellates in the world oceans | Q33254215 | ||
| Annually reoccurring bacterial communities are predictable from ocean conditions | Q33255661 | ||
| Structural and functional patterns of bacterial communities in response to protist predation along an experimental productivity gradient | Q33358288 | ||
| Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus | Q33385834 | ||
| Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus | Q33427883 | ||
| Viral control of bacterial biodiversity--evidence from a nutrient-enriched marine mesocosm experiment | Q33475100 | ||
| A global network of coexisting microbes from environmental and whole-genome sequence data | Q33574443 | ||
| Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans | Q33576612 | ||
| Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change | Q33909113 | ||
| Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. | Q33985826 | ||
| Flagellate predation on a bacterial model community: interplay of size-selective grazing, specific bacterial cell size, and bacterial community composition. | Q33985957 | ||
| Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir | Q33989704 | ||
| Defining seasonal marine microbial community dynamics | Q33995483 | ||
| Coherent dynamics and association networks among lake bacterioplankton taxa | Q34006929 | ||
| Food-web structure and network theory: The role of connectance and size | Q34149855 | ||
| Seasonality in ocean microbial communities. | Q34155981 | ||
| Abundance and distribution of Synechococcus spp. and cyanophages in the Chesapeake Bay. | Q34206384 | ||
| Abundant SAR11 viruses in the ocean. | Q34327674 | ||
| Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates | Q34333424 | ||
| Photosynthesis genes in marine viruses yield proteins during host infection | Q34459248 | ||
| Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments | Q34568097 | ||
| Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight. | Q34830155 | ||
| Significance of predation by protists in aquatic microbial food webs | Q35007718 | ||
| Regulation of bacterial assemblages in oligotrophic plankton systems: results from experimental and empirical approaches | Q35007763 | ||
| Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria | Q35135828 | ||
| Marine bacterial, archaeal and protistan association networks reveal ecological linkages. | Q35178353 | ||
| Resistance to co-occurring phages enables marine synechococcus communities to coexist with cyanophages abundant in seawater. | Q35682941 | ||
| Direct and indirect evidence of size-selective grazing on pelagic bacteria by freshwater nanoflagellates. | Q35696261 | ||
| Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates | Q35701084 | ||
| Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean | Q35941175 | ||
| Dynamics and Distribution of Cyanophages and Their Effect on Marine Synechococcus spp | Q36058153 | ||
| Ecological networks and their fragility | Q36541608 | ||
| Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters | Q37242852 | ||
| T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology | Q37804480 | ||
| Prochlorococcus: advantages and limits of minimalism | Q37818053 | ||
| Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes | Q39265944 | ||
| Short-term observations of marine bacterial and viral communities: patterns, connections and resilience | Q39299936 | ||
| Cyanophages infecting the oceanic cyanobacterium Prochlorococcus | Q39497375 | ||
| Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters | Q39805014 | ||
| Seasonal variations in virus-host populations in Norwegian coastal waters: focusing on the cyanophage community infecting marine Synechococcus spp. | Q41487077 | ||
| Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus | Q42623548 | ||
| Viruses and flagellates sustain apparent richness and reduce biomass accumulation of bacterioplankton in coastal marine waters | Q43721420 | ||
| Seasonality and monthly dynamics of marine myovirus communities | Q43864433 | ||
| Key role of selective viral-induced mortality in determining marine bacterial community composition | Q44918780 | ||
| Protistan diversity estimates based on 18S rDNA from seawater incubations in the Western North Atlantic | Q45259702 | ||
| Contrasting community versus population-based estimates of grazing and virus-induced mortality of phytoplankton. | Q45359722 | ||
| Pelagic food web patterns: do they modulate virus and nanoflagellate effects on picoplankton during the phytoplankton spring bloom? | Q45375914 | ||
| Bacterial Growth Rate and Marine Virus-Host Dynamics. | Q45740214 | ||
| Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors | Q46053117 | ||
| A combined sequence-based and fragment-based characterization of microbial eukaryote assemblages provides taxonomic context for the Terminal Restriction Fragment Length Polymorphism (T-RFLP) method | Q46206348 | ||
| Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton | Q48143643 | ||
| Complexity and fragility in ecological networks. | Q51201483 | ||
| Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity. | Q51713383 | ||
| Computing topological parameters of biological networks. | Q51900389 | ||
| Grazing impact of different heterotrophic nanoflagellates on eukaryotic (Ostreococcus tauri) and prokaryotic picoautotrophs (Prochlorococcus and Synechococcus). | Q53134547 | ||
| The capsid of the T4 phage superfamily: the evolution, diversity, and structure of some of the most prevalent proteins in the biosphere. | Q54538730 | ||
| The Ecological Role of Water-Column Microbes in the Sea | Q55933732 | ||
| A novel free-living prochlorophyte abundant in the oceanic euphotic zone | Q55966586 | ||
| Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b | Q56391435 | ||
| The calibration and validation of SeaWiFS data | Q56484740 | ||
| Annual variability of phytoplankton and bacteria in the subtropical North Pacific Ocean at Station ALOHA during the 1991–1994 ENSO event | Q56805275 | ||
| Indirect interactions in the microbial world: specificities and similarities to plant–insect systems | Q57039832 | ||
| Complex interactions in the microbial world: underexplored key links between viruses, bacteria and protozoan grazers in aquatic environments | Q57039871 | ||
| Synechococcus growth in the ocean may depend on the lysis of heterotrophic bacteria | Q57198519 | ||
| Viruses in Marine Planktonic Systems | Q57198576 | ||
| CO-CORRESPONDENCE ANALYSIS: A NEW ORDINATION METHOD TO RELATE TWO COMMUNITY COMPOSITIONS | Q59049399 | ||
| Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes | Q59069640 | ||
| Direct estimates of the contribution of viral lysis and microzooplankton grazing to the decline of a Micromonas spp. population | Q63488734 | ||
| Viruses and the microbial loop | Q86638891 | ||
| P4510 | describes a project that uses | Cytoscape | Q3699942 |
| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | bacterial community | Q129982151 |
| P304 | page(s) | 816-829 | |
| P577 | publication date | 2013-11-07 | |
| P1433 | published in | The ISME Journal | Q7741240 |
| P1476 | title | Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists | |
| P478 | volume | 8 |
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| Q38666460 | Computational approaches to predict bacteriophage-host relationships. |
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| Q39546871 | Cyanobacteria drive community composition and functionality in rock-soil interface communities. |
| Q56332080 | DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity |
| Q39459480 | Dense water plumes modulate richness and productivity of deep sea microbes. |
| Q46025251 | Diel cycling and long-term persistence of viruses in the ocean's euphotic zone. |
| Q33857439 | Distinct Network Interactions in Particle-Associated and Free-Living Bacterial Communities during a Microcystis aeruginosa Bloom in a Plateau Lake |
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| Q40581827 | Effects of host genetics and environment on egg-associated microbiotas in brown trout (Salmo trutta). |
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