Using signature genes as tools to assess environmental viral ecology and diversity

scientific article

Using signature genes as tools to assess environmental viral ecology and diversity is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/AEM.00878-14
P3181OpenCitations bibliographic resource ID1582454
P932PMC publication ID4148782
P698PubMed publication ID24837394
P5875ResearchGate publication ID262423358

P50authorEvelien M. AdriaenssensQ55908879
Don CowanQ43024855
P2093author name stringD. A. Cowan
E. M. Adriaenssens
P2860cites workPrevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hostsQ21146048
Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome readsQ21560787
The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samplesQ21562303
Taxonomic distribution of large DNA viruses in the seaQ23067972
Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphereQ24530217
The Phage Proteomic Tree: a genome-based taxonomy for phageQ24539335
Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophagesQ24548942
Genetic organization of the psbAD region in phages infecting marine Synechococcus strainsQ24563383
Identification of freshwater Phycodnaviridae and their potential phytoplankton hosts, using DNA pol sequence fragments and a genetic-distance analysisQ43179880
Detection of inteins among diverse DNA polymerase genes of uncultivated members of the PhycodnaviridaeQ43455788
Seasonality and monthly dynamics of marine myovirus communitiesQ43864433
Diversity and evolutionary relationships of T7-like podoviruses infecting marine cyanobacteriaQ44451718
Characterization of the major capsid genes (g23) of T4-type bacteriophages in the wetlands of northeast ChinaQ44990125
Diversity of the major capsid genes (g23) of T4-like bacteriophages in the eutrophic Lake Kotokel in East Siberia, Russia.Q45342096
Metavir: a web server dedicated to virome analysisQ46634586
Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplanktonQ48143643
Global distribution of nearly identical phage-encoded DNA sequencesQ48182672
Prevalence of highly host-specific cyanophages in the estuarine environment.Q53127303
The capsid of the T4 phage superfamily: the evolution, diversity, and structure of some of the most prevalent proteins in the biosphere.Q54538730
The physical environment affects cyanophage communities in British Columbia inlets.Q54753505
Molecular characterization of T4-type bacteriophages in a rice fieldQ79947022
Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediatesQ81200837
Spatial and temporal changes of cyanophage communities in paddy field soils as revealed by the capsid assembly protein gene g20Q83261928
Novel cyanophage photosynthetic gene psbA in the floodwater of a Japanese rice fieldQ84360100
Contrasting diversity of phycodnavirus signature genes in two large and deep western European lakesQ34868204
High diversity and potential origins of T4-type bacteriophages on the surface of Arctic glaciers.Q34888448
Strong seasonality and interannual recurrence in marine myovirus communitiesQ34892061
Identification of a diagnostic marker to detect freshwater cyanophages of filamentous cyanobacteria.Q35023620
Metavir 2: new tools for viral metagenome comparison and assembled virome analysisQ35124747
Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes.Q35192536
Molecular enumeration of an ecologically important cyanophage in a Laurentian Great Lake.Q35271709
The viriosphere, diversity, and genetic exchange within phage communitiesQ36175313
Ecological dynamics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa and its cyanophages in freshwaterQ36672664
Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protistsQ37650434
Marine viruses: truth or dareQ37998041
Phylogenetic analysis of members of the Phycodnaviridae virus family, using amplified fragments of the major capsid protein gene.Q38607815
The diversity of cyanomyovirus populations along a North-South Atlantic Ocean transectQ38760039
Short-term observations of marine bacterial and viral communities: patterns, connections and resilienceQ39299936
Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques.Q39560874
Amplification of DNA polymerase gene fragments from viruses infecting microalgaeQ39797310
Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal watersQ39805014
Phylodynamics and movement of Phycodnaviruses among aquatic environmentsQ40477817
Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environmentsQ40897910
Seasonal variations in virus-host populations in Norwegian coastal waters: focusing on the cyanophage community infecting marine Synechococcus spp.Q41487077
Phylogenetic diversity of sequences of cyanophage photosynthetic gene psbA in marine and freshwatersQ41956581
Variations in abundance, genome size, morphology, and functional role of the virioplankton in Lakes Annecy and Bourget over a 1-year periodQ42254422
High diversity of unknown picorna-like viruses in the sea.Q42607122
Recombination and microdiversity in coastal marine cyanophagesQ42631123
The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'.Q42674987
Application of the major capsid protein as a marker of the phylogenetic diversity of Emiliania huxleyi virusesQ42687085
Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolutionQ24646315
Ecology of prokaryotic virusesQ28258560
Phylogenetic analysis indicates evolutionary diversity and environmental segregation of marine podovirus DNA polymerase gene sequencesQ30487816
Coccolithovirus (Phycodnaviridae): characterisation of a new large dsDNA algal virus that infects Emiliana huxleyiQ30718577
Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake BourgetQ31041574
Molecular diversity among marine picophytoplankton as revealed by psbA analyses.Q33186077
Here a virus, there a virus, everywhere the same virus?Q33216483
Metagenomic analysis of coastal RNA virus communitiesQ33247702
5500 Phages examined in the electron microscopeQ33260858
New genera of RNA viruses in subtropical seawater, inferred from polymerase gene sequencesQ33291411
Biodiversity and biogeography of phages in modern stromatolites and thrombolites.Q33321846
Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequencesQ33496304
Current insights into phage biodiversity and biogeographyQ33509250
High diversity of the viral community from an Antarctic lakeQ33515229
Ubiquitous cyanobacterial podoviruses in the global oceans unveiled through viral DNA polymerase gene sequencesQ33576627
Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA virusesQ33605625
Phylogenetic diversity of T4-like bacteriophages in Lake Baikal, East Siberia.Q33616700
Development of phoH as a novel signature gene for assessing marine phage diversityQ34021604
Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in natureQ34050973
Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20.Q34053380
PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity.Q34183348
Assessing the diversity and specificity of two freshwater viral communities through metagenomicsQ34202979
Marine ecosystems: bacterial photosynthesis genes in a virusQ34222352
Diversity of environmental single-stranded DNA phages revealed by PCR amplification of the partial major capsid proteinQ34284446
Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genesQ34378465
Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian SaharaQ34434406
Evaluation of two approaches for assessing the genetic similarity of virioplankton populations as defined by genome sizeQ34445022
Metagenomic exploration of viruses throughout the Indian OceanQ34451821
Marine cyanophages exhibit local and regional biogeography.Q34528559
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environmentsQ34568097
The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecologyQ34612034
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomesQ34663016
Marine and freshwater cyanophages in a Laurentian Great Lake: evidence from infectivity assays and molecular analyses of g20 genesQ34718755
Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based toolsQ34786602
P433issue15
P407language of work or nameEnglishQ1860
P6104maintained by WikiProjectWikiProject EcologyQ10818384
P304page(s)4470-4480
P577publication date2014-08-01
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleUsing signature genes as tools to assess environmental viral ecology and diversity
P478volume80

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cites work (P2860)
Q41619547A PCR-Based Assay Targeting the Major Capsid Protein Gene of a Dinorna-Like ssRNA Virus That Infects Coral Photosymbionts
Q36070992A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples
Q41490282A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437.
Q58117643Bacteriophage vB_PagS_Vid5: A Low-Temperature Siphovirus That Harbors a Cluster of Genes Involved in the Biosynthesis of Archaeosine
Q91900255Bacteriophages of the lower urinary tract
Q40894774Biogeography of bacteriophages at four hydrothermal vent sites in the Antarctic based on g23 sequence diversity
Q30890746Biological invasions, climate change and genomics
Q92257064Characterization of Cyanophages in Lake Erie: Interaction Mechanisms and Structural Damage of Toxic Cyanobacteria
Q36310697Complete genome sequence of bacteriophage P26218 infecting Rhodoferax sp. strain IMCC26218.
Q36191957Complete genome sequences of bacteriophages P12002L and P12002S, two lytic phages that infect a marine Polaribacter strain
Q97521132Computational approaches in viral ecology
Q38366948Counts and sequences, observations that continue to change our understanding of viruses in nature
Q28648097Deep sequencing of the viral phoH gene reveals temporal variation, depth-specific composition, and persistent dominance of the same viral phoH genes in the Sargasso Sea
Q91623987Development and evaluation of taxon-specific primers for the selected Caudovirales taxa
Q64056192Diversities and potential biogeochemical impacts of mangrove soil viruses
Q36497495Diversity and Ecology of Viruses in Hyperarid Desert Soils.
Q90193244Diversity and Host Specificity Revealed by Biological Characterization and Whole Genome Sequencing of Bacteriophages Infecting Salmonella enterica
Q39914078Diversity and dynamics of algal Megaviridae members during a harmful brown tide caused by the pelagophyte, Aureococcus anophagefferens.
Q36128097Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers
Q46257976Diversity of dsDNA Viruses in a South African Hot Spring Assessed by Metagenomics and Microscopy.
Q64104465Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes
Q36183244Ecogenomic survey of plant viruses infecting Tobacco by Next generation sequencing
Q92174465Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales
Q99591420Evolutionary Study of the Crassphage Virus at Gene Level
Q47222558Exploring Viral Diversity in a Unique South African Soil Habitat
Q54936241Genomic and ecological study of two distinctive freshwater bacteriophages infecting a Comamonadaceae bacterium.
Q46265796Isolation and characterization of a novel, T7-like phage against Aeromonas veronii.
Q58781379Larger Than Life: Isolation and Genomic Characterization of a Jumbo Phage That Infects the Bacterial Plant Pathogen,
Q39084426Marine cyanophages demonstrate biogeographic patterns throughout the global ocean
Q64271021May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot : spp. and spp
Q28069079Metabolic Genes within Cyanophage Genomes: Implications for Diversity and Evolution
Q38998918Molecular Analysis of Arthrobacter Myovirus vB_ArtM-ArV1: We Blame It on the Tail
Q34549493Novel "superspreader" bacteriophages promote horizontal gene transfer by transformation
Q36128717Novel groups of cyanobacterial podovirus DNA polymerase (pol) genes exist in paddy waters in northeast China
Q28833577Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient
Q40055659Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.
Q33702428Phylogenetic Diversity of T4-Type Phages in Sediments from the Subtropical Pearl River Estuary
Q40963946Prophage Integrase Typing Is a Useful Indicator of Genomic Diversity in Salmonella enterica
Q92446773Riding the wave of genomics to investigate aquatic coliphage diversity and activity
Q54205011Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping.
Q60956152Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host⁻Viral Relationships in an Arctic Marine Ecosystem
Q38724494Single-stranded DNA phages: from early molecular biology tools to recent revolutions in environmental microbiology
Q42700448Soil Viral Communities Vary Temporally and along a Land Use Transect as Revealed by Virus-Like Particle Counting and a Modified Community Fingerprinting Approach (fRAPD).
Q61443081Survey of the bacteriophage phoH gene in wetland sediments in northeast China
Q98224694The Isolation and Genome Sequencing of Five Novel Bacteriophages From the Rumen Active Against Butyrivibrio fibrisolvens
Q33636533The use of informativity in the development of robust viromics-based examinations
Q30976236Virus ecology of fluvial systems: a blank spot on the map?
Q36250240Virus-host interactions and their roles in coral reef health and disease

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