Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools

scientific article

Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.RESMIC.2008.03.005
P698PubMed publication ID18555669

P50authorRob LavigneQ30506146
Andrew M. KropinskiQ30506151
Donald SetoQ91365880
P2093author name stringPadmanabhan Mahadevan
Hans-W Ackermann
P433issue5
P921main subjectPodovirusesQ6797
P304page(s)406-414
P577publication date2008-04-18
P1433published inResearch in MicrobiologyQ15758796
P1476titleUnifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools
P478volume159

Reverse relations

cites work (P2860)
Q35063973A Shigella boydii bacteriophage which resembles Salmonella phage ViI.
Q42410770A conserved acetyl esterase domain targets diverse bacteriophages to the Vi capsular receptor of Salmonella enterica serovar Typhi
Q41931850A lytic Providencia rettgeri virus of potential therapeutic value is a deep-branching member of the T5virus genus
Q64232756A major-capsid-protein-based multiplex PCR assay for rapid identification of selected virulent bacteriophage types
Q35750842A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans
Q41462434A proposed new bacteriophage subfamily: "Jerseyvirinae".
Q34359519A suggested classification for two groups of Campylobacter myoviruses
Q35544389A suggested new bacteriophage genus, "Kp34likevirus", within the Autographivirinae subfamily of Podoviridae
Q34240050A suggested new bacteriophage genus: "Viunalikevirus".
Q34327674Abundant SAR11 viruses in the ocean.
Q35185538Automated classification of tailed bacteriophages according to their neck organization.
Q91716176Bacillus Phage vB_BtS_B83 Previously Designated as a Plasmid May Represent a New Siphoviridae Genus
Q47422584Bacteriophage Taxonomy: An Evolving Discipline
Q30558527Bacteriophage vB_EcoM_FV3: a new member of "rV5-like viruses".
Q42120389Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, belonging to the "phiKMV-like viruses".
Q34126072Bacteriophages of Pseudomonas
Q40044915Biology and Genomics of an Historic Therapeutic Escherichia coli Bacteriophage Collection
Q33496576CGUG: in silico proteome and genome parsing tool for the determination of "core" and unique genes in the analysis of genomes up to ca. 1.9 Mb.
Q48293875Cangene gold medal award lecture - Genomic analysis and modification of Burkholderia cepacia complex bacteriophages.
Q38867862Characterization and genome comparisons of three Achromobacter phages of the family Siphoviridae
Q42206307Characterization and genome sequence of Dev2, a new T7-like bacteriophage infecting Cronobacter turicensis
Q90051671Characterization and genomic analysis of ValSw3-3, a new Siphoviridae bacteriophage infecting Vibrio alginolyticus
Q40598053Characterization of DC1, a broad-host-range Bcep22-like podovirus
Q36053054Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages
Q38994645Characterization of Novel Bacteriophages for Biocontrol of Bacterial Blight in Leek Caused by Pseudomonas syringae pv. porri.
Q34207753Characterization of Paenibacillus larvae bacteriophages and their genomic relationships to firmicute bacteriophages.
Q46297805Characterization of lytic Pseudomonas aeruginosa bacteriophages via biological properties and genomic sequences.
Q34382681Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses
Q21263044Classification of Myoviridae bacteriophages using protein sequence similarity
Q64107913Classifying the Unclassified: A Phage Classification Method
Q33875450Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU Concept
Q58564280Comparative analysis and characterization of Enterobacteria phage SSL-2009a and 'HK578likevirus' bacteriophages
Q47136606Complete Genome Sequences of Seven Vibrio cholerae Phages Isolated in China
Q57071026Complete Genome of the Specific Bacteriophage KΦ1, Its Survival and Potential in Control of Pepper Bacterial Spot
Q34501260Complete Genomic and Lysis-Cassette Characterization of the Novel Phage, KBNP1315, which Infects Avian Pathogenic Escherichia coli (APEC).
Q33404280Complete genome of the broad-host-range Erwinia amylovora phage phiEa21-4 and its relationship to Salmonella phage felix O1.
Q36310697Complete genome sequence of bacteriophage P26218 infecting Rhodoferax sp. strain IMCC26218.
Q34812545Complete genome sequence of bacteriophage vB_YenP_AP5 which infects Yersinia enterocolitica of serotype O:3.
Q42595156Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A.
Q42631062Complete genome sequence of the podoviral bacteriophage ΦCP24R, which is virulent for Clostridium perfringens
Q35260869Complete genomic sequence of bacteriophage felix o1.
Q30412446Condensed genome structure.
Q34659535CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes.
Q61798807Countermeasures Defeat a Virulent Bacteriophage
Q92058448Diverse, Abundant, and Novel Viruses Infecting the Marine Roseobacter RCA Lineage
Q89621086Diversity of Sinorhizobium (Ensifer) meliloti Bacteriophages in the Rhizosphere of Medicago marina: Myoviruses, Filamentous and N4-Like Podovirus
Q55626539Draft Genome Sequence of Pectobacterium atrosepticum PB72 and Complete Genome Sequence of the Specific Bacteriophage PP90.
Q42196057Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
Q47581310Essential Steps in Characterizing Bacteriophages: Biology, Taxonomy, and Genome Analysis
Q59356725Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy
Q34565895Evidence of a dominant lineage of Vibrio cholerae-specific lytic bacteriophages shed by cholera patients over a 10-year period in Dhaka, Bangladesh
Q21092406Expanding the marine virosphere using metagenomics
Q58091936Exploring NS3/4A, NS5A and NS5B proteins to design conserved subunit multi-epitope vaccine against HCV utilizing immunoinformatics approaches
Q21558805Four Escherichia coli O157:H7 phages: a new bacteriophage genus and taxonomic classification of T1-like phages
Q41906463Functional genomic analysis of two Staphylococcus aureus phages isolated from the dairy environment
Q39323730Genetic characterization of ØVC8 lytic phage for Vibrio cholerae O1.
Q40501897Genome Sequence of Bacillus cereus Phage vB_BceS-MY192.
Q35599165Genome and proteome of Campylobacter jejuni bacteriophage NCTC 12673
Q41934823Genome characteristics and environmental distribution of the first phage that infects the LD28 clade, a freshwater methylotrophic bacterial group.
Q36172051Genome, integration, and transduction of a novel temperate phage of Helicobacter pylori
Q35274632Genomes and characterization of phages Bcep22 and BcepIL02, founders of a novel phage type in Burkholderia cenocepacia
Q43446437Genomes of "phiKMV-like viruses" of Pseudomonas aeruginosa contain localized single-strand interruptions.
Q34322708Genomes of marine cyanopodoviruses reveal multiple origins of diversity.
Q36125508Genomic Characterization of the Novel Aeromonas hydrophila Phage Ahp1 Suggests the Derivation of a New Subgroup from phiKMV-Like Family
Q33727287Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex
Q42398484Genomic analysis of Pseudomonas putida phage tf with localized single-strand DNA interruptions
Q45885508Genomic and bioinformatics analyses of HAdV-14p, reference strain of a re-emerging respiratory pathogen and analysis of B1/B2.
Q33558072Genomic and biological analysis of phage Xfas53 and related prophages of Xylella fastidiosa
Q54936241Genomic and ecological study of two distinctive freshwater bacteriophages infecting a Comamonadaceae bacterium.
Q34487975Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7.
Q34210551Genomic and proteomic characterization of the broad-host-range Salmonella phage PVP-SE1: creation of a new phage genus
Q34974472Genomic characterization of JG068, a novel virulent podovirus active against Burkholderia cenocepacia.
Q58112633Genomic characterization of cyanophage vB_AphaS-CL131 infecting filamentous diazotrophic cyanobacterium reveals novel insights into virus-bacterium interactions
Q47658576Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments
Q36814597Genomics of Three New Bacteriophages Useful in the Biocontrol of Salmonella.
Q40114859Genotype-specific acquisition, evolution and adaptation of characteristic mutations in hepatitis E virus
Q41820294High diversity and novel species of Pseudomonas aeruginosa bacteriophages.
Q90371172Honey bees harbor a diverse gut virome engaging in nested strain-level interactions with the microbiota
Q42205112Host-dependent differences in abundance, composition and host range of cyanophages from the Red Sea.
Q33613505How to Name and Classify Your Phage: An Informal Guide
Q34519652Hyperexpansion of RNA Bacteriophage Diversity
Q33609353Identification of lytic bacteriophage MmP1, assigned to a new member of T7-like phages infecting Morganella morganii
Q36762949Identification of structural and morphogenesis genes of Pseudoalteromonas phage φRIO-1 and placement within the evolutionary history of Podoviridae.
Q34459452Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification
Q42177844Integration of genomic and proteomic analyses in the classification of the Siphoviridae family.
Q36220342Isolation and Genome Sequencing of a Novel Pseudoalteromonas Phage PH1.
Q34862508Isolation and characterisation of KP34--a novel φKMV-like bacteriophage for Klebsiella pneumoniae
Q42214148Isolation and characterization of a novel bacteriophage against Mycobacterium avium subspecies paratuberculosis
Q31133755MetaPhinder-Identifying Bacteriophage Sequences in Metagenomic Data Sets
Q34125276Molecular and physiological analysis of three Pseudomonas aeruginosa phages belonging to the "N4-like viruses".
Q37273559Molecular and physiological properties of bacteriophages from North America and Germany affecting the fire blight pathogen Erwinia amylovora
Q39793850Molecular aspects and comparative genomics of bacteriophage endolysins.
Q21134546Molecular characterization of podoviral bacteriophages virulent for Clostridium perfringens and their comparison with members of the Picovirinae
Q37123363Morphology, physiological characteristics, and complete sequence of marine bacteriophage ϕRIO-1 infecting Pseudoalteromonas marina
Q60229441Novel Bacteriophages in Enterococcus spp
Q35819786Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity.
Q36246800PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses
Q21090887Phage morphology recapitulates phylogeny: the comparative genomics of a new group of myoviruses
Q57986502Phage vB_PatP_CB5: A Member of the Proposed Genus ''
Q52609381Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes.
Q34183348PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity.
Q39690702Potential of bacteriophages and their lysins in the treatment of MRSA: current status and future perspectives
Q113481920Proteomics analysis of the soil textile imprints from tomb M6043 of the Dahekou Cemetery site in Yicheng County, Shanxi Province, China
Q39397651Pseudomonas predators: understanding and exploiting phage-host interactions.
Q33533663Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0.
Q35007181Retracted: Isolation and Characterization of a ``phiKMV-Like'' Bacteriophage and Its Therapeutic Effect on Mink Hemorrhagic Pneumonia
Q35275357Salmonella phages and prophages: genomics, taxonomy, and applied aspects
Q42207066Supersize me: Cronobacter sakazakii phage GAP32.
Q91806036Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
Q40513633Taxonomic reassessment of N4-like viruses using comparative genomics and proteomics suggests a new subfamily - "Enquartavirinae".
Q40844518Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee
Q61813277The Ability of Lytic Staphylococcal Podovirus vB_SauP_phiAGO1.3 to Coexist in Equilibrium With Its Host Facilitates the Selection of Host Mutants of Attenuated Virulence but Does Not Preclude the Phage Antistaphylococcal Activity in a Nematode Infect
Q28709436The Caulobacter crescentus phage phiCbK: genomics of a canonical phage
Q38076134The Staphylococci phages family: an overview
Q37530236The XXIIIrd Phage/Virus Assembly Meeting
Q42275023The genome and proteome of the Kluyvera bacteriophage Kvp1--another member of the T7-like Autographivirinae
Q42268581The genome of VP3, a T7-like phage used for the typing of Vibrio cholerae
Q34261523The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors
Q36710787The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5
Q42748020The lysis cassette of bacteriophage ϕKMV encodes a signal-arrest-release endolysin and a pinholin
Q54247539The lytic Myoviridae of Enterobacteriaceae form tight recombining assemblages separated by discontinuities in genome average nucleotide identity and lateral gene flow.
Q24634323The proteome and interactome of Streptococcus pneumoniae phage Cp-1
Q35023371The search for therapeutic bacteriophages uncovers one new subfamily and two new genera of Pseudomonas-infecting Myoviridae
Q38286239The η-class carbonic anhydrases as drug targets for antimalarial agents
Q34370080Three proposed new bacteriophage genera of staphylococcal phages: "3alikevirus", "77likevirus" and "Phietalikevirus".
Q30655485Twelve previously unknown phage genera are ubiquitous in global oceans
Q59351144Unlocking the Potential of 46 New Bacteriophages for Biocontrol of
Q27006745Using signature genes as tools to assess environmental viral ecology and diversity
Q46284338VICTOR: genome-based phylogeny and classification of prokaryotic viruses
Q38853376ViPTree: the viral proteomic tree server
Q35209768Viral tagging reveals discrete populations in Synechococcus viral genome sequence space.
Q45326207Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV).

Search more.