Automated classification of tailed bacteriophages according to their neck organization.

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Automated classification of tailed bacteriophages according to their neck organization. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1186/1471-2164-15-1027
P932PMC publication ID4362835
P698PubMed publication ID25428721
P5875ResearchGate publication ID268878052

P50authorPaulo TavaresQ58323458
Marie-Agnès PetitQ62096228
P2093author name stringSophie Zinn-Justin
Anne Lopes
Raphaël Guérois
P2860cites workImproved isolation of undersampled bacteriophages: finding of distant terminase genes.Q51590091
Development and application of a method for the purification of free shigatoxigenic bacteriophage from environmental samples.Q54293012
Purification and characterization of the major protein and the terminator protein of the bacteriophage lambda tailQ67544052
Comments on the arrangement of the morphogenetic genes of bacteriophage lambdaQ68881232
Head assembly steps controlled by genes F and W in bacteriophage lambdaQ70363444
Phage morphology recapitulates phylogeny: the comparative genomics of a new group of myovirusesQ21090887
ETE: a python Environment for Tree ExplorationQ21093654
The marine viromes of four oceanic regionsQ21146032
Classification of Myoviridae bacteriophages using protein sequence similarityQ21263044
Genomics of Bacterial and Archaeal Viruses: Dynamics within the Prokaryotic VirosphereQ22061800
The HHpred interactive server for protein homology detection and structure predictionQ24530456
The Phage Proteomic Tree: a genome-based taxonomy for phageQ24539335
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
ACLAME: a CLAssification of Mobile genetic Elements, update 2010Q24644500
The solution structure of bacteriophage lambda protein W, a small morphogenetic protein possessing a novel foldQ27631197
Virus maturation involving large subunit rotations and local refoldingQ27631423
Structural framework for DNA translocation via the viral portal proteinQ27644088
The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forcesQ27653281
An unexpected twist in viral capsid maturationQ27653708
The tail sheath structure of bacteriophage T4: a molecular machine for infecting bacteriaQ27653859
The phage   major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion systemQ27653979
Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gatingQ27655446
Structural basis for the nuclease activity of a bacteriophage large terminaseQ27655480
The crystal structure of bacteriophage HK97 gp6: defining a large family of head-tail connector proteinsQ27658088
Three-dimensional structure of a viral genome-delivery portal vertexQ27667540
Solution structure of gp17 from the Siphoviridae bacteriophage SPP1: insights into its role in virion assemblyQ27675489
Structural Conservation of the Myoviridae Phage Tail Sheath Protein FoldQ27676049
The Molecular Architecture of the Bacteriophage T4 NeckQ27676589
Capsid Structure and Its Stability at the Late Stages of Bacteriophage SPP1 AssemblyQ27678606
Protein secondary structure prediction based on position-specific scoring matricesQ27860483
Protein homology detection by HMM-HMM comparisonQ28292161
Topologically linked protein rings in the bacteriophage HK97 capsidQ29615513
Symmetry mismatch and DNA packaging in large bacteriophagesQ30400289
5500 Phages examined in the electron microscopeQ33260858
Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systemsQ33364420
Genotypic and phenotypic diversity among induced, stx2-carrying bacteriophages from environmental Escherichia coli strainsQ33384593
Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestryQ33821613
The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteriaQ34154001
Genome packaging in virusesQ34167999
Global phage diversityQ34191803
Phage cluster relationships identified through single gene analysis.Q34777305
Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22Q34785823
Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based toolsQ34786602
Metagenomic species profiling using universal phylogenetic marker genesQ35021237
Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversityQ36897235
Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion siteQ37451405
Mechanism of length determination in bacteriophage lambda tailsQ37867008
A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineriesQ37925356
Viral connectors for DNA encapsulationQ37970243
Long noncontractile tail machines of bacteriophages.Q37980624
Genome gating in tailed bacteriophage capsidsQ37980641
Structure of the bacteriophage P2 tailQ38526902
Structural changes of bacteriophage phi29 upon DNA packaging and releaseQ38977515
Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approachesQ39680086
Structure of a viral DNA gatekeeper at 10 A resolution by cryo-electron microscopyQ39738151
Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its hostQ41628166
Phage or PhagesQ41781361
Portal protein diversity and phage ecology.Q41971052
Detection of novel recombinases in bacteriophage genomes unveils Rad52, Rad51 and Gp2.5 remote homologs.Q42060342
DNA poised for release in bacteriophage phi29.Q43010634
The NMR structure of the gpU tail-terminator protein from bacteriophage lambda: identification of sites contributing to Mg(II)-mediated oligomerization and biological functionQ43464206
Reticulate representation of evolutionary and functional relationships between phage genomesQ43581270
The headful packaging nuclease of bacteriophage T4.Q43920863
Role of gene 10 protein in the hierarchical assembly of the bacteriophage P22 portal vertex structureQ44553030
Structural organisation of the head-to-tail interface of a bacterial virusQ45736142
P407language of work or nameEnglishQ1860
P921main subjectbacteriophageQ165028
automationQ184199
P304page(s)1027
P577publication date2014-11-27
P1433published inBMC GenomicsQ15765854
P1476titleAutomated classification of tailed bacteriophages according to their neck organization
P478volume15

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cites work (P2860)
Q57024367Active Crossfire Between Cyanobacteria and Cyanophages in Phototrophic Mat Communities Within Hot Springs
Q41606098Adaptation of Surface-Associated Bacteria to the Open Ocean: A Genomically Distinct Subpopulation of Phaeobacter gallaeciensis Colonizes Pacific Mesozooplankton
Q90363375Application of a Novel Phage LPSEYT for Biological Control of Salmonella in Foods
Q35055657Bacteriophage SPP1 tail tube protein self-assembles into β-structure-rich tubes
Q47422584Bacteriophage Taxonomy: An Evolving Discipline
Q58117643Bacteriophage vB_PagS_Vid5: A Low-Temperature Siphovirus That Harbors a Cluster of Genes Involved in the Biosynthesis of Archaeosine
Q40136737Characterization of Sinorhizobium sp. LM21 Prophages and Virus-Encoded DNA Methyltransferases in the Light of Comparative Genomic Analyses of the Sinorhizobial Virome
Q61798707Characterization of a Highly Virulent Edwardsiella anguillarum Strain Isolated From Greek Aquaculture, and a Spontaneously Induced Prophage Therein
Q67311490Characterization of the virome of Paracoccus spp. (Alphaproteobacteria) by combined in silico and in vivo approaches.
Q37735689Communication between viruses guides lysis-lysogeny decisions.
Q42620354Complete Genome Sequence of Alteromonas Virus vB_AspP-H4/4.
Q41103611Complete Genome Sequence of Citrobacter Phage CVT22 Isolated from the Gut of the Formosan Subterranean Termite, Coptotermes formosanus Shiraki
Q49922709Culture-facilitated Comparative Genomics of the Facultative Symbiont Hamiltonella defensa
Q36128097Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers
Q64268801Elucidating Viral Communities During a Phytoplankton Bloom on the West Antarctic Peninsula
Q59356725Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy
Q93115342Generation of a Prophage-Free Variant of the Fast-Growing Bacterium Vibrio natriegens
Q99564685Genome Sequences of 38 Bacteriophages Infecting Escherichia coli, Isolated from Raw Sewage
Q58556368Genome Structure of the Opportunistic Pathogen () and Identification of Putative Virulence Factors
Q64101374Genomic Analysis of sp. O23S-The Natural Host of the pSheB Plasmid Carrying Genes for Arsenic Resistance and Dissimilatory Reduction
Q40422574Genomic Diversity of Phages Infecting Probiotic Strains of Lactobacillus paracasei.
Q64077140Halobacterium salinarum virus ChaoS9, a Novel Halovirus Related to PhiH1 and PhiCh1
Q90602458Isolation and characterization of bacteriophage NTR1 infectious for Nocardia transvalensis and other Nocardia species
Q64271021May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot : spp. and spp
Q47550806Metavirome Sequencing of the Termite Gut Reveals the Presence of an Unexplored Bacteriophage Community.
Q38998918Molecular Analysis of Arthrobacter Myovirus vB_ArtM-ArV1: We Blame It on the Tail
Q46289250Molecular analysis of the low-temperature Escherichia coli phage vB_EcoS_NBD2.
Q91964064New Genus Fibralongavirus in Siphoviridae Phages of Staphylococcus pseudintermedius
Q99557422New insights into the biodiversity of coliphages in the intestine of poultry
Q35819786Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity.
Q52609381Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes.
Q40722640Phagonaute: A web-based interface for phage synteny browsing and protein function prediction
Q55316668Screening and characterization of prophages in Desulfovibrio genomes.
Q49247849The Novel Phages phiCD5763 and phiCD2955 Represent Two Groups of Big Plasmidial Siphoviridae Phages of Clostridium difficile
Q60960755The Revisited Genome of Bacillus subtilis Bacteriophage SPP1
Q91892303The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition
Q54247539The lytic Myoviridae of Enterobacteriaceae form tight recombining assemblages separated by discontinuities in genome average nucleotide identity and lateral gene flow.
Q38820742The role of bacteriophages in periodontal health and disease.
Q46250239Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter
Q36069994Two Inducible Prophages of an Antarctic Pseudomonas sp. ANT_H14 Use the Same Capsid for Packaging Their Genomes - Characterization of a Novel Phage Helper-Satellite System
Q46284338VICTOR: genome-based phylogeny and classification of prokaryotic viruses
Q92739733Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages
Q55426934Viruses of the Nahant Collection, characterization of 251 marine Vibrionaceae viruses.
Q49640242Whole-Genome Sequence of the Novel Enterobacter Bacteriophage Arya with an Integrase Pseudogene, Isolated from the Gut of the Formosan Subterranean Termite
Q49206459Whole-Genome Sequence of the Novel Temperate Enterobacter Bacteriophage Tyrion, Isolated from the Gut of the Formosan Subterranean Termite.

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