| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2014PLoSO...996946O |
| P356 | DOI | 10.1371/JOURNAL.PONE.0096946 |
| P932 | PMC publication ID | 4016200 |
| P698 | PubMed publication ID | 24816929 |
| P5875 | ResearchGate publication ID | 262228105 |
| P50 | author | Takeshi Itoh | Q55459148 |
| Hirokazu Handa | Q56863323 | ||
| P2093 | author name string | Jianzhong Wu | |
| Takashi Matsumoto | |||
| Hiroyuki Kanamori | |||
| Yoshihiro Kawahara | |||
| Youko Oono | |||
| Takayuki Yazawa | |||
| Fuminori Kobayashi | |||
| Satomi Mori | |||
| Harumi Sasaki | |||
| P2860 | cites work | Ultrafast and memory-efficient alignment of short DNA sequences to the human genome | Q21183894 |
| Mapping and quantifying mammalian transcriptomes by RNA-Seq | Q22122035 | ||
| A map of rice genome variation reveals the origin of cultivated rice | Q22122144 | ||
| Phytochelatin synthase genes from Arabidopsis and the yeast Schizosaccharomyces pombe | Q24543974 | ||
| RNA-Seq: a revolutionary tool for transcriptomics | Q24596169 | ||
| Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation | Q24627354 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| TopHat: discovering splice junctions with RNA-Seq | Q24655505 | ||
| Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family | Q28183538 | ||
| Catalytic properties of rice alpha-oxygenase. A comparison with mammalian prostaglandin H synthases | Q28192604 | ||
| Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence | Q29032100 | ||
| Oxygen toxicity, oxygen radicals, transition metals and disease | Q29615096 | ||
| The class III peroxidase multigenic family in rice and its evolution in land plants. | Q50797504 | ||
| Sequence and expression analysis of the thioredoxin protein gene family in rice. | Q51956738 | ||
| Regulation of gene expression programs during Arabidopsis seed development: roles of the ABI3 locus and of endogenous abscisic acid. | Q52213365 | ||
| The IRT1 protein from Arabidopsis thaliana is a metal transporter with a broad substrate range. | Q53983833 | ||
| Rice 1Cys-peroxiredoxin over-expressed in transgenic tobacco does not maintain dormancy but enhances antioxidant activity. | Q54027009 | ||
| Molecular analyses of the metallothionein gene family in rice (Oryza sativa L.). | Q54579362 | ||
| Cutadapt removes adapter sequences from high-throughput sequencing reads | Q55953584 | ||
| mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress | Q59255498 | ||
| Stress tolerance in transgenic tobacco seedlings that overexpress glutathione S-transferase/glutathione peroxidase | Q73227403 | ||
| Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway | Q74597689 | ||
| Metal-binding thermodynamics of the histidine-rich sequence from the metal-transport protein IRT1 of Arabidopsis thaliana | Q79212422 | ||
| Cloning of three ZIP/Nramp transporter genes from a Ni hyperaccumulator plant Thlaspi japonicum and their Ni2+-transport abilities | Q81296741 | ||
| Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice | Q83272833 | ||
| Proteome changes in Arabidopsis thaliana roots upon exposure to Cd2+. | Q30319939 | ||
| Transcriptional profiling in cadmium-treated rice seedling roots using suppressive subtractive hybridization | Q30406186 | ||
| Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of zinc and cadmium | Q30410061 | ||
| Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification | Q30776706 | ||
| Expression analysis of the Arabidopsis peroxidase multigenic family | Q33204430 | ||
| Transcriptomic changes and signalling pathways induced by arsenic stress in rice roots | Q33354347 | ||
| Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor | Q33495608 | ||
| Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq | Q34085150 | ||
| Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis | Q34088871 | ||
| Gene limiting cadmium accumulation in rice | Q34151615 | ||
| A large family of class III plant peroxidases | Q34267750 | ||
| Phytochelatins, the heavy-metal-binding peptides of plants, are synthesized from glutathione by a specific gamma-glutamylcysteine dipeptidyl transpeptidase (phytochelatin synthase). | Q34302487 | ||
| Molecular distinction between alternative oxidase from monocots and dicots | Q34525234 | ||
| Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice | Q34559402 | ||
| A long way ahead: understanding and engineering plant metal accumulation. | Q34740963 | ||
| Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis | Q34833561 | ||
| Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains | Q35641299 | ||
| Reactive oxygen gene network of plants. | Q35909671 | ||
| Performing the paradoxical: how plant peroxidases modify the cell wall | Q35926067 | ||
| Abscisic acid and water-stress induce the expression of a novel rice gene. | Q36062557 | ||
| The elusive function of metallothioneins | Q36069228 | ||
| Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses | Q36466575 | ||
| Genome-wide analysis of plant glutaredoxin systems | Q36486869 | ||
| Transition metal transport. | Q36803080 | ||
| Specific functions of individual class III peroxidase genes | Q37352502 | ||
| ROS signaling: the new wave? | Q37863874 | ||
| The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice | Q38342491 | ||
| Four tightly linked rab genes are differentially expressed in rice. | Q38342510 | ||
| Over-expression of OsDREB genes lead to enhanced drought tolerance in rice | Q38941805 | ||
| OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. | Q38978927 | ||
| THE MOLECULAR BASIS OF DEHYDRATION TOLERANCE IN PLANTS. | Q39094357 | ||
| Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice | Q39096837 | ||
| Expression of a bifunctional fusion of the Escherichia coli genes for trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase in transgenic rice plants increases trehalose accumulation and abiotic stress tolerance without stunting growt | Q39100801 | ||
| Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions | Q39318348 | ||
| Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth | Q39318358 | ||
| Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development | Q39339069 | ||
| Overexpression of a 9-cis-epoxycarotenoid dioxygenase gene in Nicotiana plumbaginifolia increases abscisic acid and phaseic acid levels and enhances drought tolerance | Q39373695 | ||
| Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress | Q39478646 | ||
| Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana | Q39505609 | ||
| Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter | Q39532162 | ||
| Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice | Q39607215 | ||
| Over-expression of a LEA gene in rice improves drought resistance under the field conditions | Q39607299 | ||
| Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.). | Q39608439 | ||
| Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice | Q39615262 | ||
| A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance | Q39633787 | ||
| Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy | Q42164589 | ||
| The responses of Arabidopsis thaliana to cadmium exposure explored via metabolite profiling | Q43203941 | ||
| Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium | Q43255686 | ||
| Reactive oxygen species are involved in plant defense against a gall midge | Q43543445 | ||
| Genome-wide identification of rice class I metallothionein gene: tissue expression patterns and induction in response to heavy metal stress | Q43597261 | ||
| Manganese efficiency in barley: identification and characterization of the metal ion transporter HvIRT1. | Q43804405 | ||
| The use of multiple transcription starts causes the dual targeting of Arabidopsis putative monodehydroascorbate reductase to both mitochondria and chloroplasts | Q44087100 | ||
| Heavy metal toxicity: cadmium permeates through calcium channels and disturbs the plant water status. | Q44224794 | ||
| Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots | Q44627999 | ||
| Organisation and structural evolution of the rice glutathione S-transferase gene family | Q44834188 | ||
| Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice | Q45163190 | ||
| Stress-responsive alpha-dioxygenase expression in tomato roots | Q45200741 | ||
| Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct | Q46303463 | ||
| Rice fatty acid alpha-dioxygenase is induced by pathogen attack and heavy metal stress: activation through jasmonate signaling | Q46690282 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | drought | Q43059 |
| transcriptome | Q252857 | ||
| P304 | page(s) | e96946 | |
| P577 | publication date | 2014-05-09 | |
| P1433 | published in | PLOS One | Q564954 |
| P1476 | title | Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in rice | |
| P478 | volume | 9 |
| Q55036260 | Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and Their Response to Stress. |
| Q49693510 | Annotation and characterization of Cd-responsive metal transporter genes in rapeseed (Brassica napus). |
| Q39196671 | Asymmetrical development of root endodermis and exodermis in reaction to abiotic stresses |
| Q47114714 | Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes. |
| Q58695015 | Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs |
| Q36182525 | Comparative transcriptome profiling of upland (VS16) and lowland (AP13) ecotypes of switchgrass |
| Q38444278 | Comparative transcriptomics of rice plants under cold, iron, and salt stresses. |
| Q99579723 | Exploring genomic variation associated with drought stress in Picea mariana populations |
| Q47113274 | Genome-Wide Identification of the PHD-Finger Family Genes and Their Responses to Environmental Stresses in Oryza sativa L. |
| Q38961727 | Genome-Wide Transcriptome Analysis of Cadmium Stress in Rice. |
| Q49216913 | Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance. |
| Q47686335 | Genome-wide analysis of rice cis-natural antisense transcription under cadmium exposure using strand-specific RNA-Seq. |
| Q57052757 | Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments |
| Q64989391 | Genome-wide analysis reveals four key transcription factors associated with cadmium stress in creeping bentgrass (Agrostis stolonifera L.). |
| Q99709699 | Genome-wide association studies of ionomic and agronomic traits in USDA mini core collection of rice and comparative analyses of different mapping methods |
| Q39302453 | Genome-wide identification and analysis of Catharanthus roseus RLK1-like kinases in rice |
| Q39627329 | Genome-wide identification of gene expression in contrasting maize inbred lines under field drought conditions reveals the significance of transcription factors in drought tolerance |
| Q64110220 | Identification and expression analysis of the GDSL esterase/lipase family genes, and the characterization of in Hance under cadmium stress |
| Q61812792 | Lectin Sequence Distribution in QTLs from Rice (Oryza sativa) Suggest A Role in Morphological Traits and Stress Responses |
| Q37601911 | Modulating AtDREB1C Expression Improves Drought Tolerance in Salvia miltiorrhiza |
| Q100416606 | Molecular study of drought response in the Mediterranean conifer Pinus pinaster Ait.: Differential transcriptomic profiling reveals constitutive water deficit-independent drought tolerance mechanisms |
| Q88283056 | Oxidative and genotoxic damages in plants in response to heavy metal stress and maintenance of genome stability |
| Q36239956 | Role of Recombinant DNA Technology to Improve Life |
| Q36118357 | Systematic Isolation and Characterization of Cadmium Tolerant Genes in Tobacco: A cDNA Library Construction and Screening Approach |
| Q39124759 | TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice |
| Q26742016 | The Nipponbare genome and the next-generation of rice genomics research in Japan |
| Q36133577 | Transcriptome Analysis of Cadmium-Treated Roots in Maize (Zea mays L.). |
| Q91903703 | Transcriptome analysis of rice (Oryza sativa L.) shoots responsive to cadmium stress |
| Q36747710 | Transcriptomic Changes Drive Physiological Responses to Progressive Drought Stress and Rehydration in Tomato |
| Q92921719 | Transcriptomic Responses to Water Deficit and Nematode Infection in Mycorrhizal Tomato Roots |
| Q38976896 | Transcriptomic, biochemical and physio-anatomical investigations shed more light on responses to drought stress in two contrasting sesame genotypes |
| Q54376025 | Validation of reference genes for accurate normalization of gene expression with quantitative real-time PCR in Haloxylon ammodendron under different abiotic stresses. |
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