| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1000268052 |
| P356 | DOI | 10.1186/GB-2011-12-2-R18 |
| P2888 | exact match | https://scigraph.springernature.com/pub.10.1186/gb-2011-12-2-r18 |
| P8608 | Fatcat ID | release_6ouremy7uzdixm2tdomtucg73y |
| P932 | PMC publication ID | 3188800 |
| P698 | PubMed publication ID | 21338519 |
| P5875 | ResearchGate publication ID | 49852627 |
| P50 | author | Chad Nusbaum | Q28036203 |
| Andreas Gnirke | Q29397647 | ||
| P2093 | author name string | David B Jaffe | |
| Timothy Fennell | |||
| Daniel Aird | |||
| Michael G Ross | |||
| Carsten Russ | |||
| Wei-Sheng Chen | |||
| Maxwell Danielsson | |||
| P2860 | cites work | Genome sequence, comparative analysis and haplotype structure of the domestic dog | Q22122465 |
| The genome of the social amoeba Dictyostelium discoideum | Q22122479 | ||
| Genome sequence of the human malaria parasite Plasmodium falciparum | Q22122524 | ||
| Genome sequencing in microfabricated high-density picolitre reactors | Q24544260 | ||
| Accurate whole human genome sequencing using reversible terminator chemistry | Q24641887 | ||
| Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding | Q24647100 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| A large genome center's improvements to the Illumina sequencing system | Q24656090 | ||
| Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays | Q28263829 | ||
| Real-time DNA sequencing from single polymerase molecules | Q28301519 | ||
| Genome analysis of multi- and extensively-drug-resistant tuberculosis from KwaZulu-Natal, South Africa | Q28471774 | ||
| Substantial biases in ultra-short read data sets from high-throughput DNA sequencing | Q29617050 | ||
| Single-molecule sequencing of an individual human genome | Q30434015 | ||
| Closing the gaps on human chromosome 19 revealed genes with a high density of repetitive tandemly arrayed elements | Q33196739 | ||
| Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes | Q33418269 | ||
| Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing | Q37035282 | ||
| High-resolution mapping of copy-number alterations with massively parallel sequencing | Q37072451 | ||
| Closing gaps in the human genome using sequencing by synthesis | Q37282857 | ||
| ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads | Q37442931 | ||
| Rapid whole-genome mutational profiling using next-generation sequencing technologies | Q43012575 | ||
| Validation of two ribosomal RNA removal methods for microbial metatranscriptomics | Q44744271 | ||
| Whole-genome sequencing and variant discovery in C. elegans. | Q47595683 | ||
| P433 | issue | 2 | |
| P921 | main subject | bias | Q742736 |
| P304 | page(s) | R18 | |
| P577 | publication date | 2011-02-21 | |
| P1433 | published in | Genome Biology | Q5533480 |
| P1476 | title | Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries | |
| P478 | volume | 12 |
| Q36280276 | 2.7 million samples genotyped for HLA by next generation sequencing: lessons learned |
| Q36099019 | A Cost-Effective Approach to Sequence Hundreds of Complete Mitochondrial Genomes |
| Q90176943 | A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project |
| Q55092841 | A Leveraged Signal-to-Noise Ratio (LSTNR) Method to Extract Differentially Expressed Genes and Multivariate Patterns of Expression From Noisy and Low-Replication RNAseq Data. |
| Q46272041 | A New Resistance Gene against Potato Late Blight Originating from Solanum pinnatisectum Located on Potato Chromosome 7. |
| Q93054978 | A Review of the Role of the Gut Microbiome in Personalized Sports Nutrition |
| Q30749786 | A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data |
| Q36171091 | A comparative study of ChIP-seq sequencing library preparation methods |
| Q37504982 | A comparison of in vitro nucleosome positioning mapped with chicken, frog and a variety of yeast core histones |
| Q31109005 | A comparison of tools for the simulation of genomic next-generation sequencing data |
| Q34434721 | A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium |
| Q92321833 | A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes |
| Q36329297 | A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments |
| Q51543538 | A computational pipeline for comparative ChIP-seq analyses. |
| Q90480994 | A droplet microfluidic platform for efficient enzymatic chromatin digestion enables robust determination of nucleosome positioning |
| Q35530102 | A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes |
| Q36567950 | A gene-expression screen identifies a non-toxic sumoylation inhibitor that mimics SUMO-less human LRH-1 in liver |
| Q30620390 | A high-throughput optomechanical retrieval method for sequence-verified clonal DNA from the NGS platform |
| Q34403997 | A mechanistic basis for amplification differences between samples and between genome regions |
| Q45049473 | A method for noninvasive detection of fetal large deletions/duplications by low coverage massively parallel sequencing |
| Q38690620 | A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform |
| Q91891904 | A qPCR method for genome editing efficiency determination and single-cell clone screening in human cells |
| Q34794604 | A robust method to analyze copy number alterations of less than 100 kb in single cells using oligonucleotide array CGH. |
| Q34284395 | A shot in the genome: how accurately do shotgun 454 sequences represent a genome? |
| Q34543255 | ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies |
| Q93160534 | ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation |
| Q64067243 | Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication |
| Q92579040 | Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard |
| Q61444158 | Accessible molecular phylogenomics at no cost: obtaining 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data |
| Q47652803 | Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data |
| Q24604867 | Accurate and comprehensive sequencing of personal genomes |
| Q34772601 | Accurately identifying low-allelic fraction variants in single samples with next-generation sequencing: applications in tumor subclone resolution |
| Q30404787 | Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments. |
| Q90734255 | Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext) |
| Q90091437 | Adapting SureSelect enrichment protocol to the Ion Torrent S5 platform in molecular diagnostics of craniosynostosis |
| Q28728385 | Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity |
| Q36939744 | Advanced Characterization of DNA Molecules in rAAV Vector Preparations by Single-stranded Virus Next-generation Sequencing |
| Q34873285 | Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes |
| Q38726211 | Affinity Maturation of a Cyclic Peptide Handle for Therapeutic Antibodies Using Deep Mutational Scanning |
| Q36882486 | Alternative mutational pathways to intermediate resistance to vancomycin in methicillin-resistant Staphylococcus aureus |
| Q55514230 | AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing. |
| Q34134030 | Amplification biases and consistent recovery of loci in a double-digest RAD-seq protocol |
| Q34647373 | An RNA-seq protocol to identify mRNA expression changes in mouse diaphyseal bone: applications in mice with bone property altering Lrp5 mutations |
| Q33622625 | An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations |
| Q35783860 | An improved genome reference for the African cichlid, Metriaclima zebra. |
| Q31165581 | An integrative method to normalize RNA-Seq data |
| Q33659736 | Analysis of plant microbe interactions in the era of next generation sequencing technologies |
| Q34268888 | Analysis of the p53/CEP-1 regulated non-coding transcriptome in C. elegans by an NSR-seq strategy |
| Q48254505 | Anchored multiplex PCR for targeted next-generation sequencing |
| Q35147240 | Ancient DNA sheds new light on the Svalbard foraminiferal fossil record of the last millennium |
| Q21284438 | Ancient DNA studies: new perspectives on old samples |
| Q38696378 | Ancient whole genome enrichment using baits built from modern DNA. |
| Q91588819 | Applying a Linear Amplification Strategy to Recombinase Polymerase Amplification for Uniform DNA Library Amplification |
| Q30581144 | Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data |
| Q40121767 | Assessing the performance of the Oxford Nanopore Technologies MinION. |
| Q35621583 | Automated Gel Size Selection to Improve the Quality of Next-generation Sequencing Libraries Prepared from Environmental Water Samples |
| Q37707802 | Barcode extension for analysis and reconstruction of structures |
| Q92525232 | Benchmarking Metagenomics Tools for Taxonomic Classification |
| Q36110990 | Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations |
| Q35081844 | Bias from removing read duplication in ultra-deep sequencing experiments |
| Q34193443 | Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments |
| Q30689935 | Biases in small RNA deep sequencing data |
| Q36290345 | Biases in the SMART-DNA library preparation method associated with genomic poly dA/dT sequences |
| Q92703295 | Bioinformatics and Computational Tools for Next-Generation Sequencing Analysis in Clinical Genetics |
| Q64228265 | Biophysical Characterization Platform Informs Protein Scaffold Evolvability |
| Q30731247 | BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution |
| Q30573512 | CHANCE: comprehensive software for quality control and validation of ChIP-seq data |
| Q30887163 | CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data |
| Q35995950 | CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing. |
| Q34219588 | CONTRA: copy number analysis for targeted resequencing |
| Q35690516 | Calibrating ChIP-Seq with Nucleosomal Internal Standards to Measure Histone Modification Density Genome Wide |
| Q64066380 | Calling Variants in the Clinic: Informed Variant Calling Decisions Based on Biological, Clinical, and Laboratory Variables |
| Q55692870 | Cancer Diagnosis Using a Liquid Biopsy: Challenges and Expectations. |
| Q52364252 | Capturing the 'ome': the expanding molecular toolbox for RNA and DNA library construction. |
| Q41890649 | ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions. |
| Q64067224 | ChIPulate: A comprehensive ChIP-seq simulation pipeline |
| Q37940824 | Challenges in studying genomic structural variant formation mechanisms: the short-read dilemma and beyond |
| Q34691666 | Changes in diversity, abundance, and structure of soil bacterial communities in Brazilian Savanna under different land use systems. |
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| Q33725699 | Characterization of porcine simple sequence repeat variation on a population scale with genome resequencing data |
| Q36587175 | Characterization of the Core and Caste-Specific Microbiota in the Termite, Reticulitermes flavipes. |
| Q30635784 | Characterizing and measuring bias in sequence data |
| Q49747061 | Chemical biology of genomic DNA: minimizing PCR bias. |
| Q33989742 | Cleavage of rRNA ensures translational cessation in sperm at fertilization |
| Q39824867 | Clinical exome performance for reporting secondary genetic findings |
| Q58608541 | Clustering-local-unique-enriched-signals (CLUES) promotes identification of novel regulators of ES cell self-renewal and pluripotency |
| Q31044157 | CoNVaDING: Single Exon Variation Detection in Targeted NGS Data |
| Q38661204 | Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides |
| Q58606919 | Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection |
| Q93051896 | Comparative Analysis of Gene Expression in Virulent and Attenuated Strains of Infectious Bronchitis Virus at Subcodon Resolution |
| Q34345427 | Comparative analysis of RNA sequencing methods for degraded or low-input samples |
| Q42220191 | Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds |
| Q30385702 | Comparison of DNA Quantification Methods for Next Generation Sequencing. |
| Q35755166 | Comparison of Hi-C results using in-solution versus in-nucleus ligation |
| Q35915975 | Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis |
| Q55127927 | Comparison of single cell sequencing data between two whole genome amplification methods on two sequencing platforms. |
| Q92306856 | Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes |
| Q37970068 | Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph |
| Q54966069 | Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data. |
| Q33584087 | Comprehensive evaluation and optimization of amplicon library preparation methods for high-throughput antibody sequencing |
| Q40506324 | Comprehensive genetic exploration of skeletal dysplasia using targeted exome sequencing. |
| Q37598116 | Comprehensive molecular diagnosis of 179 Leber congenital amaurosis and juvenile retinitis pigmentosa patients by targeted next generation sequencing |
| Q38828544 | Computational analysis of stochastic heterogeneity in PCR amplification efficiency revealed by single molecule barcoding. |
| Q26864808 | Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges |
| Q35208886 | Conducting a microbiome study |
| Q58800363 | Conducting metagenomic studies in microbiology and clinical research |
| Q47659265 | Considerations on Experimental Design and Data Analysis of Chromatin Immunoprecipitation Experiments |
| Q35977708 | Construction of a Sequencing Library from Circulating Cell-Free DNA. |
| Q35060470 | Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products |
| Q33609561 | Construction of a map-based reference genome sequence for barley, Hordeum vulgare L |
| Q31105539 | Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants |
| Q35551381 | Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors |
| Q34832300 | Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster |
| Q38933985 | Count ratio model reveals bias affecting NGS fold changes |
| Q35929102 | Coverage analysis in a targeted amplicon-based next-generation sequencing panel for myeloid neoplasms |
| Q34776833 | Coverage bias and sensitivity of variant calling for four whole-genome sequencing technologies |
| Q39283243 | Critical points for an accurate human genome analysis. |
| Q35768989 | Cross Platform Standardisation of an Experimental Pipeline for Use in the Identification of Dysregulated Human Circulating MiRNAs |
| Q34251827 | Current challenges in de novo plant genome sequencing and assembly |
| Q36186424 | Current genomics in cardiovascular medicine |
| Q41983212 | DNA polymerase preference determines PCR priming efficiency |
| Q28652878 | DNA polymerases engineered by directed evolution to incorporate non-standard nucleotides |
| Q54240378 | DREAMing of a patent-free human genome for clinical sequencing. |
| Q39489184 | DSBCapture: in situ capture and sequencing of DNA breaks. |
| Q34252845 | De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. |
| Q30971336 | De novo meta-assembly of ultra-deep sequencing data |
| Q92937218 | Deconvolution of nucleic-acid length distributions: a gel electrophoresis analysis tool and applications |
| Q36108032 | Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools. |
| Q38260554 | Demystifying the RAD fad. |
| Q58795625 | Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches |
| Q57783644 | Detecting Copy Number Variation via Next Generation Technology |
| Q64004317 | Detecting Expansions of Tandem Repeats in Cohorts Sequenced with Short-Read Sequencing Data |
| Q53836887 | Detecting Rare Mutations and DNA Damage with Sequencing-Based Methods. |
| Q30844399 | Detecting and correcting systematic variation in large-scale RNA sequencing data |
| Q35828069 | Detecting false-positive signals in exome sequencing |
| Q34992854 | Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq |
| Q64075063 | Detection of False-Positive Deletions from the Database of Genomic Variants |
| Q33833183 | Detection of gene rearrangements in targeted clinical next-generation sequencing. |
| Q37077006 | Development and evaluation of a non-ribosomal random PCR and next-generation sequencing based assay for detection and sequencing of hand, foot and mouth disease pathogens. |
| Q42206019 | Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites |
| Q35750134 | Development of Genomic Microsatellite Markers in Carthamus tinctorius L. (Safflower) Using Next Generation Sequencing and Assessment of Their Cross-Species Transferability and Utility for Diversity Analysis |
| Q30540469 | Differences in microRNA detection levels are technology and sequence dependent |
| Q98735781 | Digital RNA Sequencing of Human Epidermal Keratinocytes Carrying Human Papillomavirus Type 16 E7 |
| Q35709067 | Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes |
| Q34799922 | Digital genotyping of sorghum - a diverse plant species with a large repeat-rich genome |
| Q40265792 | Direct Estimate of the Spontaneous Mutation Rate Uncovers the Effects of Drift and Recombination in the Chlamydomonas reinhardtii Plastid Genome |
| Q95272498 | Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts |
| Q31125424 | Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling |
| Q36358463 | Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth |
| Q35237953 | Dissecting microbial community structure and methane-producing pathways of a full-scale anaerobic reactor digesting activated sludge from wastewater treatment by metagenomic sequencing. |
| Q37580333 | Distinct chromatin features characterize different classes of repeat sequences in Drosophila melanogaster |
| Q30935585 | Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data |
| Q21090595 | Diversity and community composition of methanogenic archaea in the rumen of Scottish upland sheep assessed by different methods |
| Q42761674 | Draft Genome Sequence of Amycolatopsis mediterranei DSM 40773, a Tangible Antibiotic Producer |
| Q37061001 | Droplet barcoding for massively parallel single-molecule deep sequencing |
| Q36083782 | Dual randomization of oligonucleotides to reduce the bias in ribosome-profiling libraries. |
| Q38379253 | Effect of method of deduplication on estimation of differential gene expression using RNA-seq |
| Q38900918 | Effect of minichromosome maintenance protein 2 deficiency on the locations of DNA replication origins |
| Q35128698 | Effective variant detection by targeted deep sequencing of DNA pools: an example from Parkinson's disease |
| Q30620847 | Effects of GC bias in next-generation-sequencing data on de novo genome assembly |
| Q30463597 | Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes |
| Q31076343 | Efficient depletion of host DNA contamination in malaria clinical sequencing |
| Q64962178 | Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers. |
| Q38168221 | Emerging technologies for hybridization based single nucleotide polymorphism detection |
| Q34349930 | Engineered DNA ligases with improved activities in vitro |
| Q28551087 | Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments |
| Q42277813 | Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii |
| Q34124838 | Estimating abundances of retroviral insertion sites from DNA fragment length data. |
| Q46238590 | Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding. |
| Q35202622 | Evaluating bias-reducing protocols for RNA sequencing library preparation |
| Q34311393 | Evaluation and optimisation of preparative semi-automated electrophoresis systems for Illumina library preparation |
| Q36367163 | Evaluation of MC1R high-throughput nucleotide sequencing data generated by the 1000 Genomes Project |
| Q98158822 | Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer |
| Q38665568 | Evaluation of Quality Assessment Protocols for High Throughput Genome Resequencing Data |
| Q35977470 | Evaluation of TagSeq, a reliable low-cost alternative for RNAseq |
| Q30717960 | Evaluation of assembly strategies using RNA-seq data associated with grain development of wheat (Triticum aestivum L.). |
| Q55459312 | Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses. |
| Q34070099 | Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems |
| Q60913075 | Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing |
| Q35803179 | Evaluation of whole-genome sequencing of four Chinese crested dogs for variant detection using the ion proton system |
| Q35312667 | Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis. |
| Q26766434 | Evolutionary Insights into RNA trans-Splicing in Vertebrates |
| Q35200827 | Exome sequencing from nanogram amounts of starting DNA: comparing three approaches |
| Q34070048 | Exploring the gonad transcriptome of two extreme male pigs with RNA-seq |
| Q36199596 | Extensive de novo mutation rate variation between individuals and across the genome of Chlamydomonas reinhardtii |
| Q31137728 | Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples |
| Q31114379 | Findings made in gene panel to whole genome sequencing: data, knowledge, ethics - and consequences? |
| Q52726149 | Fine-tuning of substrate preferences of the Src-family kinase Lck revealed through a high-throughput specificity screen. |
| Q34350757 | Finished bacterial genomes from shotgun sequence data |
| Q92085639 | ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest |
| Q35527797 | From benchtop to desktop: important considerations when designing amplicon sequencing workflows |
| Q31137675 | From next-generation resequencing reads to a high-quality variant data set. |
| Q36157800 | Fungal diversity and seasonal succession in ash leaves infected by the invasive ascomycete Hymenoscyphus fraxineus |
| Q30357091 | Future microfluidic and nanofluidic modular platforms for nucleic acid liquid biopsy in precision medicine. |
| Q89692195 | GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms |
| Q52599473 | GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data. |
| Q21128696 | GROM-RD: resolving genomic biases to improve read depth detection of copy number variants |
| Q92282989 | Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data |
| Q50211505 | Gene Duplication and Dosage Effects During The Early Emergence of C4 Photosynthesis in The Grass Genus Alloteropsis. |
| Q34122807 | Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation |
| Q35178159 | Genetic variation in human DNA replication timing |
| Q30052127 | Genome Reduction and Co-evolution between the Primary and Secondary Bacterial Symbionts of Psyllids |
| Q35915715 | Genome Survey Sequencing for the Characterization of the Genetic Background of Rosa roxburghii Tratt and Leaf Ascorbate Metabolism Genes |
| Q41660716 | Genome Survey Sequencing of Luffa Cylindrica L. and Microsatellite High Resolution Melting (SSR-HRM) Analysis for Genetic Relationship of Luffa Genotypes |
| Q28816945 | Genome data on the extinct Bison schoetensacki establish it as a sister species of the extant European bison (Bison bonasus) |
| Q39029280 | Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines. |
| Q91825967 | Genome investigations show host adaptation and transmission of LA-MRSA CC398 from pigs into Danish healthcare institutions |
| Q92240173 | Genome size, chromosome number determination, and analysis of the repetitive elements in Cissus quadrangularis |
| Q64973153 | Genome survey and SSR analysis of Apocynum venetum. |
| Q89986737 | Genome survey and development of polymorphic microsatellite loci for Sillago sihama based on Illumina sequencing technology |
| Q90317363 | Genome survey of Chinese fir (Cunninghamia lanceolata): Identification of genomic SSRs and demonstration of their utility in genetic diversity analysis |
| Q36214379 | Genome survey of pistachio (Pistacia vera L.) by next generation sequencing: Development of novel SSR markers and genetic diversity in Pistacia species. |
| Q34854692 | Genome survey sequencing and genetic background characterization of Gracilariopsis lemaneiformis (Rhodophyta) based on next-generation sequencing |
| Q60302223 | Genome survey sequencing for the characterization of genetic background of Dracaena cambodiana and its defense response during dragon's blood formation |
| Q89184361 | Genome survey sequencing of red swamp crayfish Procambarus clarkii |
| Q38619058 | Genome-wide Target Enrichment-aided Chip Design: a 66 K SNP Chip for Cashmere Goat |
| Q34102972 | Genome-wide mutant fitness profiling identifies nutritional requirements for optimal growth of Yersinia pestis in deep tissue |
| Q97587581 | Genome-wide piggyBac transposon-based mutagenesis and quantitative insertion-site analysis in haploid Candida species |
| Q34375163 | Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity |
| Q57152977 | Genomic approaches for studying crop evolution |
| Q28545256 | HCV genotyping from NGS short reads and its application in genotype detection from HCV mixed infected plasma |
| Q36103962 | HLA genotyping in the clinical laboratory: comparison of next-generation sequencing methods |
| Q34057278 | Heterochromatin controls γH2A localization in Neurospora crassa |
| Q31042123 | HiCUP: pipeline for mapping and processing Hi-C data |
| Q35748469 | Hidden genes in birds. |
| Q92283498 | High efficiency error suppression for accurate detection of low-frequency variants |
| Q64082765 | High information capacity DNA-based data storage with augmented encoding characters using degenerate bases |
| Q96950522 | High throughput single cell analysis of mitochondrial heteroplasmy in mitochondrial diseases |
| Q55000873 | High-throughput construction of multiple cas9 gene variants via assembly of high-depth tiled and sequence-verified oligonucleotides. |
| Q55215076 | Highly multiplexed and quantitative cell-surface protein profiling using genetically barcoded antibodies. |
| Q47865612 | How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data |
| Q63740162 | Human cytomegalovirus genomics and transcriptomics through the lens of next-generation sequencing: revision and future challenges |
| Q33355941 | HvLUX1 is a candidate gene underlying the early maturity 10 locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways |
| Q21999522 | IVT-seq reveals extreme bias in RNA sequencing |
| Q36325651 | Identification of Low-Confidence Regions in the Pig Reference Genome (Sscrofa10.2). |
| Q90076396 | Identification of tissue-specific and cold-responsive lncRNAs in Medicago truncatula by high-throughput RNA sequencing |
| Q35616475 | Identifying Human Genome-Wide CNV, LOH and UPD by Targeted Sequencing of Selected Regions |
| Q99554953 | Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise |
| Q49229074 | Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA. |
| Q60044970 | Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing |
| Q30400521 | Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community |
| Q35534620 | Impact of three Illumina library construction methods on GC bias and HLA genotype calling. |
| Q42411189 | Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes |
| Q35047676 | Improved workflows for high throughput library preparation using the transposome-based Nextera system |
| Q35852303 | In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae. |
| Q47398162 | Incorporation of unique molecular identifiers in TruSeq adapters improves the accuracy of quantitative sequencing |
| Q35755784 | Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact |
| Q41874710 | Individual genome assembly from complex community short-read metagenomic datasets |
| Q31137996 | Inferring neutral biodiversity parameters using environmental DNA data sets |
| Q98944948 | Insufficiently complex unique-molecular identifiers (UMIs) distort small RNA sequencing |
| Q89542348 | Integrative DNA copy number detection and genotyping from sequencing and array-based platforms |
| Q28607510 | Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification |
| Q92735265 | Investigating appropriate molecular and chemical methods for ingredient identity testing of plant-based protein powder dietary supplements |
| Q42064995 | Ion Torrent sequencing as a tool for mutation discovery in the flax (Linum usitatissimum L.) genome. |
| Q64062909 | Issues and current standards of controls in microbiome research |
| Q26991755 | Issues and prospects of microRNA-based biomarkers in blood and other body fluids |
| Q28115000 | Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes |
| Q35832097 | Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape. |
| Q34354530 | Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals |
| Q26995193 | Library construction for next-generation sequencing: overviews and challenges |
| Q30573417 | Library preparation and data analysis packages for rapid genome sequencing |
| Q38179760 | Library preparation methods for next-generation sequencing: tone down the bias |
| Q58725483 | Long Non-Coding RNAs Guide the Fine-Tuning of Gene Regulation in B-Cell Development and Malignancy |
| Q96172138 | Long-read human genome sequencing and its applications |
| Q36104839 | Low Input Whole-Exome Sequencing to Determine the Representation of the Tumor Exome in Circulating DNA of Non-Small Cell Lung Cancer Patients |
| Q55192719 | MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications. |
| Q28084399 | Manipulating microRNAs for improved biomass and biofuels from plant feedstocks |
| Q50204728 | Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq. |
| Q43019217 | Mapping of active replication origins in vivo in thaum- and euryarchaeal replicons. |
| Q29346609 | Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation |
| Q35944850 | Mariner Transposons Contain a Silencer: Possible Role of the Polycomb Repressive Complex 2. |
| Q45876564 | Massively parallel sequencing for early molecular diagnosis in Leber congenital amaurosis |
| Q26830619 | Massively parallel sequencing: the new frontier of hematologic genomics |
| Q91153655 | Measurement of copy number variation in single cancer cells using rapid-emulsification digital droplet MDA |
| Q57646393 | Measuring coverage and accuracy of whole-exome sequencing in clinical context |
| Q30853974 | Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis |
| Q64081328 | Measuring sequencer size bias using REcount: a novel method for highly accurate Illumina sequencing-based quantification |
| Q43791398 | Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities |
| Q64100609 | Metagenomic Approach to Characterizing Disease Epidemiology in a Disease-Endemic Environment in Northern Thailand |
| Q49170275 | Metagenomic analysis of anammox communities in three different microbial aggregates. |
| Q90535608 | Methods for the analysis of transcriptome dynamics |
| Q39266253 | Methyl CpG binding domain ultra-sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation |
| Q37342829 | MethylMeter(®): bisulfite-free quantitative and sensitive DNA methylation profiling and mutation detection in FFPE samples |
| Q30867945 | Methylated DNA is over-represented in whole-genome bisulfite sequencing data |
| Q57073747 | Microbial Communities Associated With Indigo Fermentation That Thrive in Anaerobic Alkaline Environments |
| Q38578772 | Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform |
| Q94474070 | Model-driven generation of artificial yeast promoters |
| Q33878956 | Modeling bias and variation in the stochastic processes of small RNA sequencing. |
| Q37482304 | Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation. |
| Q30417775 | Molecular diagnosis of autosomal dominant polycystic kidney disease using next-generation sequencing |
| Q59326781 | Monensin Alters the Functional and Metabolomic Profile of Rumen Microbiota in Beef Cattle |
| Q34204436 | Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study. |
| Q35275073 | Multiplex single-molecule interaction profiling of DNA-barcoded proteins |
| Q34803562 | Multiplexed Illumina sequencing libraries from picogram quantities of DNA |
| Q56688655 | Multiplexed enrichment of rare DNA variants via sequence-selective and temperature-robust amplification |
| Q90240103 | Nanopore sequencing: An enrichment-free alternative to mitochondrial DNA sequencing |
| Q92162410 | Networks of mRNA Processing and Alternative Splicing Regulation in Health and Disease |
| Q46241596 | New specific primers for amplification of the Internal Transcribed Spacer region in Clitellata (Annelida). |
| Q52375104 | Next Generation Sequencing Methods for Diagnosis of Epilepsy Syndromes. |
| Q38456577 | Next Generation Sequencing-based analysis of RNA polymerase functions |
| Q38014423 | Next generation quantitative genetics in plants |
| Q34077829 | Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia |
| Q90212657 | Next-generation forward genetic screens: using simulated data to improve the design of mapping-by-sequencing experiments in Arabidopsis |
| Q45999197 | Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae). |
| Q35199471 | Next-generation sequencing fragment library construction |
| Q57801296 | Noise cancellation using total variation for copy number variation detection |
| Q55334173 | Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data. |
| Q54184929 | Non-invasive prenatal diagnostic testing for β-thalassaemia using cell-free fetal DNA and next generation sequencing. |
| Q50051267 | Non-invasive prenatal testing for fetal inheritance of maternal β-thalassaemia mutations using targeted sequencing and relative mutation dosage: a feasibility study. |
| Q36392412 | Non-random fragmentation patterns in circulating cell-free DNA reflect epigenetic regulation |
| Q34147576 | Noncoding RNAs as emerging regulators of Plasmodium falciparum virulence gene expression. |
| Q34496747 | Noninvasive Fetal Trisomy (NIFTY) test: an advanced noninvasive prenatal diagnosis methodology for fetal autosomal and sex chromosomal aneuploidies |
| Q35930225 | Normalization, bias correction, and peak calling for ChIP-seq |
| Q33686861 | Novel Algorithms for Improved Sensitivity in Non-Invasive Prenatal Testing |
| Q33678448 | Novel metrics to measure coverage in whole exome sequencing datasets reveal local and global non-uniformity. |
| Q35754535 | Nucleosome Organization in Human Embryonic Stem Cells |
| Q33768883 | OccuPeak: ChIP-Seq peak calling based on internal background modelling |
| Q38053654 | Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline. |
| Q28646132 | Odintifier--A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing |
| Q50033786 | Optimal enzymes for amplifying sequencing libraries. |
| Q36407303 | Optimization of design and production strategies for novel adeno-associated viral display peptide libraries |
| Q30383764 | Optimized Illumina PCR-free library preparation for bacterial whole genome sequencing and analysis of factors influencing de novo assembly |
| Q31076879 | Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes. |
| Q34902839 | Optimizing information in Next-Generation-Sequencing (NGS) reads for improving de novo genome assembly |
| Q36050120 | PCR Strategies for Complete Allele Calling in Multigene Families Using High-Throughput Sequencing Approaches |
| Q89688947 | PCR inhibition in qPCR, dPCR and MPS-mechanisms and solutions |
| Q90095467 | PCR-free whole exome sequencing: Cost-effective and efficient in detecting rare mutations |
| Q57274915 | PM-Seq: Using Finite Poisson Mixture Models for RNA-Seq Data Analysis and Transcript Expression Level Quantification |
| Q30611167 | PRICE: software for the targeted assembly of components of (Meta) genomic sequence data |
| Q34338922 | Paired-end sequencing of Fosmid libraries by Illumina |
| Q30953170 | PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets |
| Q30378821 | Pattern Recognition on Read Positioning in Next Generation Sequencing. |
| Q33805165 | Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria |
| Q38387997 | PeakXus: comprehensive transcription factor binding site discovery from ChIP-Nexus and ChIP-Exo experiments. |
| Q35126522 | Performance comparison between rapid sequencing platforms for ultra-low coverage sequencing strategy |
| Q34023426 | Performance comparison of exome DNA sequencing technologies |
| Q35184230 | Performance comparison of four exome capture systems for deep sequencing |
| Q36896837 | Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies |
| Q33359151 | Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq |
| Q88423042 | Polyamine Control of Translation Elongation Regulates Start Site Selection on Antizyme Inhibitor mRNA via Ribosome Queuing |
| Q93115146 | Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata |
| Q36532705 | Precision methylome characterization of Mycobacterium tuberculosis complex (MTBC) using PacBio single-molecule real-time (SMRT) technology |
| Q30743735 | Prevention, diagnosis and treatment of high-throughput sequencing data pathologies |
| Q51518031 | Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. |
| Q34195606 | Producing parasitic helminth reference and draft genomes at the Wellcome Trust Sanger Institute. |
| Q46724083 | Progressive retinal atrophy in the Polski Owczarek Nizinny dog: a clinical and genetic study |
| Q49468107 | Proper experimental design requires randomization/balancing of molecular ecology experiments. |
| Q28084330 | Protein-DNA binding in high-resolution |
| Q36214540 | Q-RRBS: a quantitative reduced representation bisulfite sequencing method for single-cell methylome analyses. |
| Q33663633 | Quality control on the frontier |
| Q46063281 | Quantification of Inter-Sample Differences in T-Cell Receptor Repertoires Using Sequence-Based Information |
| Q36051182 | Quantitation of next generation sequencing library preparation protocol efficiencies using droplet digital PCR assays - a systematic comparison of DNA library preparation kits for Illumina sequencing |
| Q34530591 | Quantitative assessment of mitochondrial DNA copies from whole genome sequencing |
| Q35579082 | RNA sequencing for transcript 5'-end mapping in mycobacteria |
| Q35541156 | RNA-Rocket: an RNA-Seq analysis resource for infectious disease research |
| Q34284546 | RNA-Seq and human complex diseases: recent accomplishments and future perspectives. |
| Q64091356 | RNA-sequencing in ophthalmology research: considerations for experimental design and analysis |
| Q28607995 | Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals |
| Q55091835 | Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation sequencing strategies. |
| Q35856749 | Reassessment of the Genome Size in Elaeis guineensis and Elaeis oleifera, and Its Interspecific Hybrid |
| Q48105064 | Recent Advances in Detecting Mitochondrial DNA Heteroplasmic Variations. |
| Q47558038 | Recent insights into the tick microbiome gained through next-generation sequencing |
| Q34143874 | Removing technical variability in RNA-seq data using conditional quantile normalization |
| Q31027821 | Replicate exome-sequencing in a multiple-generation family: improved interpretation of next-generation sequencing data |
| Q42774137 | Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories |
| Q53276840 | Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens. |
| Q89582757 | Robust RNA-Seq of aRNA-amplified single cell material collected by patch clamp |
| Q49718011 | Rolling circle amplification shows a sinusoidal template length-dependent amplification bias. |
| Q33557378 | SPlinted Ligation Adapter Tagging (SPLAT), a novel library preparation method for whole genome bisulphite sequencing |
| Q92752880 | Screening and evaluating of long non-coding RNAs in prenatal and postnatal pituitary gland of sheep |
| Q36049287 | Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics |
| Q36765190 | Sequence features accurately predict genome-wide MeCP2 binding in vivo. |
| Q90698816 | Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies |
| Q34398440 | Sequencing depth and coverage: key considerations in genomic analyses |
| Q38816948 | Sequencing on the SOLiD 5500xl System - in-depth characterization of the GC bias |
| Q30454551 | Sequencing platform and library preparation choices impact viral metagenomes |
| Q30455439 | Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data |
| Q22003039 | Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi |
| Q47095620 | Single molecule sequencing of the M13 virus genome without amplification |
| Q36914760 | Single molecule targeted sequencing for cancer gene mutation detection |
| Q34369763 | Single nucleotide analysis of cytosine methylation by whole-genome shotgun bisulfite sequencing |
| Q57897811 | Single-cell genomics: An overview |
| Q64089553 | Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation |
| Q47447856 | Size-selective DNA separation: recovery spectra help determine the sodium chloride (NaCl) and polyethylene glycol (PEG) concentrations required |
| Q28296073 | Small, smaller, smallest: the origins and evolution of ancient dual symbioses in a Phloem-feeding insect |
| Q58116117 | Solid-phase enzyme catalysis of DNA end repair and 3' A-tailing reduces GC-bias in next-generation sequencing of human genomic DNA |
| Q33822089 | Sources and Functions of Extracellular Small RNAs in Human Circulation |
| Q30981347 | Sources of PCR-induced distortions in high-throughput sequencing data sets |
| Q39748197 | Spatial distribution of aquatic marine fungi across the western Arctic and sub-arctic. |
| Q94960300 | Spatially resolved and multiplexed MicroRNA quantification from tissue using nanoliter well arrays |
| Q30575346 | Special features of RAD Sequencing data: implications for genotyping |
| Q56980480 | Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples |
| Q38040034 | Statistical challenges associated with detecting copy number variations with next-generation sequencing. |
| Q35662591 | Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA. |
| Q38296746 | Strategies for validation and testing of DNA methylation biomarkers. |
| Q35142841 | Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics. |
| Q57045853 | Succession of picophytoplankton during the spring bloom 2012 in Disko Bay (West Greenland)—an unexpectedly low abundance of green algae |
| Q28728245 | Summarizing and correcting the GC content bias in high-throughput sequencing |
| Q28647332 | Swabs to genomes: a comprehensive workflow |
| Q49911969 | Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias. |
| Q91968519 | Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing |
| Q36084768 | Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies |
| Q35826318 | TARDIS, a targeted RNA directional sequencing method for rare RNA discovery |
| Q53280647 | TRUmiCount: Correctly counting absolute numbers of molecules using unique molecular identifiers. |
| Q38630683 | Talking the talk, but not walking the walk: RT-qPCR as a paradigm for the lack of reproducibility in molecular research |
| Q34035161 | Targeted high throughput sequencing in clinical cancer settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity |
| Q36404734 | Targeted sequencing of both DNA strands barcoded and captured individually by RNA probes to identify genome-wide ultra-rare mutations |
| Q41674738 | Technical Advances in the Measurement of Residual Disease in Acute Myeloid Leukemia. |
| Q35060890 | Testing the reproducibility of multiple displacement amplification on genomes of clonal endosymbiont populations |
| Q91045004 | The Personal Genome Project-UK, an open access resource of human multi-omics data |
| Q89666114 | The Progress of Multi-Omics Technologies: Determining Function in Lactic Acid Bacteria Using a Systems Level Approach |
| Q104608401 | The RNA Architecture of the SARS-CoV-2 3'-Untranslated Region |
| Q92821693 | The Tempo and Mode of Angiosperm Mitochondrial Genome Divergence Inferred from Intraspecific Variation in Arabidopsis thaliana |
| Q27313398 | The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification |
| Q38707847 | The draft genome sequence of Hymenobacter sp. CRA2 isolated from Nama Karoo shrub land soils from South Africa. |
| Q35346690 | The effects of variable sample biomass on comparative metagenomics |
| Q38058682 | The expanding scope of DNA sequencing |
| Q21560744 | The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation |
| Q36292756 | The impact of RNA secondary structure on read start locations on the Illumina sequencing platform |
| Q46306438 | The microbiome associated with two Synechococcus ribotypes at different levels of ecological interaction. |
| Q38983137 | The mitochondrial genome of the lone star tick (Amblyomma americanum). |
| Q38811527 | The present and future of de novo whole-genome assembly |
| Q34325516 | The rhoptry proteins ROP18 and ROP5 mediate Toxoplasma gondii evasion of the murine, but not the human, interferon-gamma response. |
| Q97072562 | The role of Long Non-Coding RNAs (lncRNAs) and downstream signaling pathways in Leukemia progression |
| Q33921022 | The role of replicates for error mitigation in next-generation sequencing |
| Q28298852 | The statistical-mechanics of chromosome conformation capture |
| Q36947263 | The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice |
| Q34008445 | Titration-free 454 sequencing using Y adapters |
| Q58553934 | Toward Integrative Bacterial Monitoring of Metolachlor Toxicity in Groundwater |
| Q39157662 | Toward a Resilient, Functional Microbiome: Drought Tolerance-Alleviating Microbes for Sustainable Agriculture |
| Q30363613 | Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow |
| Q34196783 | Towards accurate characterization of clonal heterogeneity based on structural variation |
| Q28771734 | Translation of 5' leaders is pervasive in genes resistant to eIF2 repression |
| Q34007229 | Transposable element dynamics among asymbiotic and ectomycorrhizal Amanita fungi. |
| Q38382209 | UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy |
| Q34557106 | Understanding nucleosome dynamics and their links to gene expression and DNA replication |
| Q28647858 | Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data |
| Q36997969 | User guide for mapping-by-sequencing in Arabidopsis |
| Q41845857 | Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects |
| Q45823548 | Validation of a next-generation sequencing assay for clinical molecular oncology. |
| Q48512286 | Variable rates of simple satellite gains across the Drosophila phylogeny. |
| Q35209205 | Variant detection sensitivity and biases in whole genome and exome sequencing |
| Q27016083 | Viral surveillance and discovery |
| Q47286390 | WISExome: a within-sample comparison approach to detect copy number variations in whole exome sequencing data |
| Q36129644 | Whole Genome Sequencing of Enterovirus species C Isolates by High-Throughput Sequencing: Development of Generic Primers. |
| Q57667365 | Whole exome sequencing is an efficient and sensitive method for detection of germline mutations in patients with phaeochromcytomas and paragangliomas |
| Q38651500 | Whole-genome sequencing approaches for conservation biology: advantages, limitations, and practical recommendations. |
| Q36013634 | Whole-genome sequencing overcomes pseudogene homology to diagnose autosomal dominant polycystic kidney disease |
| Q33954128 | Whole-transcriptome RNAseq analysis from minute amount of total RNA. |
| Q33565173 | Why assembling plant genome sequences is so challenging |
| Q58553596 | omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data |
| Q43759417 | pIRS: Profile-based Illumina pair-end reads simulator |
| Q38396444 | proovread: large-scale high-accuracy PacBio correction through iterative short read consensus |
| Q64069742 | scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data |
| Q116675556 | Genome-wide survey reveals the phylogenomic relationships of Chirolophis japonicus Herzenstein, 1890 (Stichaeidae, Perciformes) |
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