| scholarly article | Q13442814 |
| P2093 | author name string | Douglas L Black | |
| Amy Pandya-Jones | |||
| P2860 | cites work | The human SWI/SNF subunit Brm is a regulator of alternative splicing | Q24298527 |
| Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals | Q24537300 | ||
| Splicing regulation: from a parts list of regulatory elements to an integrated splicing code | Q24642620 | ||
| Alternative isoform regulation in human tissue transcriptomes | Q27861118 | ||
| The 3'-end-processing factor CPSF is required for the splicing of single-intron pre-mRNAs in vivo | Q27863699 | ||
| Mechanisms of alternative pre-messenger RNA splicing | Q28131822 | ||
| Steroid hormone receptor coactivation and alternative RNA splicing by U2AF65-related proteins CAPERalpha and CAPERbeta | Q28305986 | ||
| The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins | Q28570708 | ||
| The dynamics of a pre-mRNA splicing factor in living cells | Q29617746 | ||
| Interactions between small nuclear ribonucleoprotein particles in formation of spliceosomes | Q29618293 | ||
| Splice site selection, rate of splicing, and alternative splicing on nascent transcripts | Q30461752 | ||
| Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns | Q33241167 | ||
| Nascent pre-mRNA transcripts are associated with nuclear regions enriched in splicing factors | Q33283824 | ||
| Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers | Q33935979 | ||
| The splicing of U12-type introns can be a rate-limiting step in gene expression | Q34089608 | ||
| Disruption of base pairing between the 5' splice site and the 5' end of U1 snRNA is required for spliceosome assembly | Q34345743 | ||
| Functional coupling of RNAP II transcription to spliceosome assembly | Q34650438 | ||
| Polypyrimidine tract sequences direct selection of alternative branch sites and influence protein binding. | Q34876508 | ||
| A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional | Q35688363 | ||
| Intron-dependent recruitment of pre-mRNA splicing factors to sites of transcription | Q36236894 | ||
| Molecular dissection of mammalian RNA polymerase II transcriptional termination | Q36528493 | ||
| The polypyrimidine tract binding protein binds upstream of neural cell-specific c-src exon N1 to repress the splicing of the intron downstream | Q36570481 | ||
| Functional association between promoter structure and transcript alternative splicing. | Q36597450 | ||
| Physical Isolation of Nascent RNA Chains Transcribed by RNA Polymerase II: Evidence for Cotranscriptional Splicing | Q36669203 | ||
| Ordered splicing of thymidine kinase pre-mRNA during the S phase of the cell cycle | Q36730280 | ||
| Order of intron removal during splicing of endogenous adenine phosphoribosyltransferase and dihydrofolate reductase pre-mRNA. | Q36823565 | ||
| The Carboxyl-terminal Domain of RNA Polymerase II Is Not Sufficient to Enhance the Efficiency of Pre-mRNA Capping or Splicing in the Context of a Different Polymerase | Q37136812 | ||
| Cracking the RNA polymerase II CTD code | Q37155088 | ||
| Polyadenylation releases mRNA from RNA polymerase II in a process that is licensed by splicing | Q37168944 | ||
| Processing of phosphoenolpyruvate carboxykinase (GTP) RNA in vivo | Q37522414 | ||
| Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer | Q38320513 | ||
| RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20. | Q40222409 | ||
| The carboxyl terminus of vertebrate poly(A) polymerase interacts with U2AF 65 to couple 3'-end processing and splicing | Q40442143 | ||
| Transcriptional termination in the Balbiani ring 1 gene is closely coupled to 3'-end formation and excision of the 3'-terminal intron | Q40445738 | ||
| A slow RNA polymerase II affects alternative splicing in vivo | Q40627617 | ||
| In vitro splicing pathways of pre-mRNAs containing multiple intervening sequences? | Q40671335 | ||
| The fibronectin gene as a model for splicing and transcription studies. | Q40993754 | ||
| Functional coupling of last-intron splicing and 3'-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage | Q41911100 | ||
| In vivo cooperation between introns during pre-mRNA processing | Q42805040 | ||
| The intranuclear site of excision of each intron in Balbiani ring 3 pre-mRNA is influenced by the time remaining to transcription termination and different excision efficiencies for the various introns. | Q43205918 | ||
| SR protein family members display diverse activities in the formation of nascent and mature mRNPs in vivo. | Q47942040 | ||
| Meiosis-specific RNA splicing in yeast | Q48209478 | ||
| Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals. | Q48531006 | ||
| Isolation of an active step I spliceosome and composition of its RNP core. | Q50336090 | ||
| Correlation of hnRNP structure and nascent transcript cleavage | Q52516604 | ||
| Splicing of Balbiani ring 1 gene pre-mRNA occurs simultaneously with transcription. | Q52544550 | ||
| Modified nuclear processing of alpha 1-acid glycoprotein RNA during inflammation | Q58479995 | ||
| Positive patches and negative noodles: linking RNA processing to transcription? | Q70716691 | ||
| Upstream introns influence the efficiency of final intron removal and RNA 3'-end formation | Q72668341 | ||
| Distribution of pre-mRNA splicing factors at sites of RNA polymerase II transcription | Q73355867 | ||
| RNA polymerase II targets pre-mRNA splicing factors to transcription sites in vivo | Q77962891 | ||
| Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing | Q79451334 | ||
| Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells | Q80143464 | ||
| P4510 | describes a project that uses | ImageQuant | Q112270642 |
| P433 | issue | 10 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1896-1908 | |
| P577 | publication date | 2009-08-05 | |
| P1433 | published in | RNA | Q7277164 |
| P1476 | title | Co-transcriptional splicing of constitutive and alternative exons | |
| P478 | volume | 15 |
| Q37620941 | "Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions |
| Q27308081 | A Conserved Nuclear Cyclophilin Is Required for Both RNA Polymerase II Elongation and Co-transcriptional Splicing in Caenorhabditis elegans |
| Q42777925 | A Detailed Protocol for Subcellular RNA Sequencing (subRNA-seq). |
| Q40562957 | A Splicing Reporter Tuned to Non-AG Acceptor Sites Reveals that Luteolin Enhances the Recognition of Non-canonical Acceptor Sites |
| Q36532639 | A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis |
| Q24294892 | A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination |
| Q33855473 | A mutation in a splicing factor that causes retinitis pigmentosa has a transcriptome-wide effect on mRNA splicing. |
| Q99248814 | A protein assembly mediates Xist localization and gene silencing |
| Q64113172 | A slow transcription rate causes embryonic lethality and perturbs kinetic coupling of neuronal genes |
| Q33822991 | Adventures in time and space: splicing efficiency and RNA polymerase II elongation rate |
| Q39803624 | Alternative Splicing of Fibroblast Growth Factor Receptor IgIII Loops in Cancer |
| Q39268958 | Alternative splicing switches: Important players in cell differentiation. |
| Q38079475 | Alternative splicing: a pivotal step between eukaryotic transcription and translation |
| Q33623094 | An Rrp6-like protein positively regulates noncoding RNA levels and DNA methylation in Arabidopsis. |
| Q37173219 | An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication |
| Q35176396 | Cell-to-cell variability of alternative RNA splicing |
| Q52847390 | Cellular Fractionation and Isolation of Chromatin-Associated RNA. |
| Q58541925 | Chromatin accessibility dynamics across development and ageing |
| Q26999294 | Chromatin and epigenetic regulation of pre-mRNA processing |
| Q37734851 | Chromatin density and splicing destiny: on the cross-talk between chromatin structure and splicing |
| Q38126379 | Chromatin's thread to alternative splicing regulation |
| Q28081880 | Chromatin, DNA structure and alternative splicing |
| Q38826835 | Circular RNAs: Unexpected outputs of many protein-coding genes |
| Q36019901 | Co-transcriptional regulation of alternative pre-mRNA splicing |
| Q51513312 | Co-transcriptional splicing and the CTD code. |
| Q36441240 | Connecting the dots: chromatin and alternative splicing in EMT. |
| Q38052877 | Connections between chromatin signatures and splicing |
| Q35097988 | Considering the kinetics of mRNA synthesis in the analysis of the genome and epigenome reveals determinants of co-transcriptional splicing. |
| Q42702238 | Cotranscriptional assembly of mRNP complexes that determine the cytoplasmic fate of mRNA. |
| Q36418605 | Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse |
| Q39663252 | Counting on co-transcriptional splicing |
| Q37130394 | Coupling between alternative polyadenylation and alternative splicing is limited to terminal introns |
| Q35006630 | Coupling mRNA processing with transcription in time and space. |
| Q38815706 | Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing |
| Q41836697 | DNA hypermethylation of alternatively spliced and repeat sequences in humans |
| Q35970681 | Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements |
| Q24609086 | Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs |
| Q61803766 | Deregulation of Circular RNAs in Cancer From the Perspectives of Aberrant Biogenesis, Transport and Removal |
| Q34799985 | Detained introns are a novel, widespread class of post-transcriptionally spliced introns |
| Q92513205 | Emerging roles of histone modifications and HDACs in RNA splicing |
| Q35870551 | Epigenetic regulation of CDH1 exon 8 alternative splicing in gastric cancer |
| Q24625879 | Epigenetics in alternative pre-mRNA splicing |
| Q33799119 | First come, first served revisited: factors affecting the same alternative splicing event have different effects on the relative rates of intron removal |
| Q35969015 | Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing. |
| Q36165982 | Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A. |
| Q63359372 | Global donor and acceptor splicing site kinetics in human cells. |
| Q34605595 | Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation |
| Q93047547 | H3K36 Methylation and the Chromodomain Protein Eaf3 Are Required for Proper Cotranscriptional Spliceosome Assembly |
| Q52631103 | HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes. |
| Q28480856 | High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region |
| Q33818140 | Histone deacetylase activity modulates alternative splicing. |
| Q38971520 | Histone modifications influence skipped exons inclusion |
| Q24293198 | Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cells |
| Q40364345 | In silico analysis of regulatory and structural motifs of the ovine HSP90AA1 gene. |
| Q33567881 | Inhibition of U4 snRNA in human cells causes the stable retention of polyadenylated pre-mRNA in the nucleus |
| Q39185469 | Integration of mRNP formation and export |
| Q37224753 | Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs |
| Q93269984 | Integrative functional genomics decodes herpes simplex virus 1 |
| Q36958121 | Interconnections Between RNA-Processing Pathways Revealed by a Sequencing-Based Genetic Screen for Pre-mRNA Splicing Mutants in Fission Yeast |
| Q39524575 | Intron cleavage affects processing of alternatively spliced transcripts. |
| Q39229528 | Intron retention as a component of regulated gene expression programs. |
| Q38204716 | Isoforms of receptors of fibroblast growth factors |
| Q46371240 | Isolation of Newly Transcribed RNA Using the Metabolic Label 4-Thiouridine |
| Q35556509 | K-homology nuclear ribonucleoproteins regulate floral organ identity and determinacy in arabidopsis. |
| Q37690728 | LOX-1 and Its Splice Variants: A New Challenge for Atherosclerosis and Cancer-Targeted Therapies |
| Q38838948 | Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy |
| Q34467642 | Mechanisms and Regulation of Alternative Pre-mRNA Splicing |
| Q46299517 | Methods for Extraction of RNA, Proteins, or Protein Complexes from Subcellular Compartments of Eukaryotic Cells |
| Q40950687 | Molecular Outcome, Prediction, and Clinical Consequences of Splice Variants in COL1A1, Which Encodes the proα1(I) Chains of Type I Procollagen |
| Q50875432 | Mot1, Ino80C, and NC2 Function Coordinately to Regulate Pervasive Transcription in Yeast and Mammals. |
| Q26825096 | Mutual interdependence of splicing and transcription elongation |
| Q26851218 | Mutual relationships between transcription and pre-mRNA processing in the synthesis of mRNA |
| Q35182763 | NFAT1 and NFAT3 cooperate with HDAC4 during regulation of alternative splicing of PMCA isoforms in PC12 cells |
| Q35624734 | Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila |
| Q35927818 | Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution |
| Q35869261 | Non-sequential and multi-step splicing of the dystrophin transcript. |
| Q34221402 | Nonsense mutation-associated Becker muscular dystrophy: interplay between exon definition and splicing regulatory elements within the DMD gene |
| Q33635469 | Nonsense-mediated decay as a terminating mechanism for antisense oligonucleotides |
| Q39361232 | Normal and altered pre-mRNA processing in the DMD gene |
| Q47099658 | Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes |
| Q58549132 | Order of removal of conventional and nonconventional introns from nuclear transcripts of Euglena gracilis |
| Q36023229 | POF regulates the expression of genes on the fourth chromosome in Drosophila melanogaster by binding to nascent RNA |
| Q58608601 | Polypyrimidine tract-binding protein blocks miRNA-124 biogenesis to enforce its neuronal-specific expression in the mouse |
| Q46686083 | Post-transcriptional spliceosomes are retained in nuclear speckles until splicing completion |
| Q39013218 | Posttranscriptional coordination of splicing and miRNA biogenesis in plants. |
| Q35158090 | Pre-mRNA splicing during transcription in the mammalian system |
| Q35170883 | Pre-mRNA splicing is a determinant of histone H3K36 methylation |
| Q34590283 | Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate. |
| Q37868141 | Pre-mRNA splicing: where and when in the nucleus |
| Q100758258 | Preparation of Mammalian Nascent RNA for Long Read Sequencing |
| Q30941350 | Quantification of co-transcriptional splicing from RNA-Seq data |
| Q41940904 | RNA Polymerase II Elongation at the Crossroads of Transcription and Alternative Splicing |
| Q58599873 | RNA Polymerase II Phosphorylated on CTD Serine 5 Interacts with the Spliceosome during Co-transcriptional Splicing |
| Q40528081 | Rbfox Proteins Regulate Splicing as Part of a Large Multiprotein Complex LASR. |
| Q35018262 | Real-time imaging of cotranscriptional splicing reveals a kinetic model that reduces noise: implications for alternative splicing regulation |
| Q36915028 | Reflections on the history of pre-mRNA processing and highlights of current knowledge: a unified picture |
| Q38858919 | Regulation of Tissue-Specific Alternative Splicing: C. elegans as a Model System |
| Q26999239 | Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms |
| Q41609371 | Repetitive elements regulate circular RNA biogenesis |
| Q24607867 | Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros |
| Q35633440 | Single-molecule imaging of transcriptionally coupled and uncoupled splicing |
| Q92602462 | Smu1 and RED are required for activation of spliceosomal B complexes assembled on short introns |
| Q35107880 | SnapShot-Seq: a method for extracting genome-wide, in vivo mRNA dynamics from a single total RNA sample |
| Q35842466 | SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing |
| Q26798148 | Splicing Regulation: A Molecular Device to Enhance Cancer Cell Adaptation |
| Q39500409 | Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36. |
| Q36932889 | Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression |
| Q39999542 | Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II. |
| Q93177519 | Splicing of long non-coding RNAs primarily depends on polypyrimidine tract and 5' splice-site sequences due to weak interactions with SR proteins |
| Q42095047 | Splicing of many human genes involves sites embedded within introns |
| Q39323969 | Splicing of mouse p53 pre-mRNA does not always follow the "first come, first served" principle and may be influenced by cisplatin treatment and serum starvation |
| Q82527147 | Synonymous polymorphisms at splicing regulatory sites are associated with CpGs in neurodegenerative disease-related genes |
| Q28830393 | Synthetic oligonucleotides recruit ILF2/3 to RNA transcripts to modulate splicing |
| Q39579491 | TALE-directed local modulation of H3K9 methylation shapes exon recognition. |
| Q36543721 | TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing |
| Q38297247 | Temporal Dissection of Rate Limiting Transcriptional Events Using Pol II ChIP and RNA Analysis of Adrenergic Stress Gene Activation. |
| Q46302412 | The 5' region of Xist RNA has the potential to associate with chromatin through the A-repeat |
| Q90341087 | The Exon Junction Complex: A Multitasking Guardian of the Transcriptome |
| Q24292831 | The RNA recognition motif protein RBM11 is a novel tissue-specific splicing regulator |
| Q33742058 | The RNA-binding protein hnRNPLL induces a T cell alternative splicing program delineated by differential intron retention in polyadenylated RNA. |
| Q34342920 | The exon junction complex controls transposable element activity by ensuring faithful splicing of the piwi transcript. |
| Q47244412 | The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture. |
| Q33987519 | The translation initiation factor eIF4E regulates the sex-specific expression of the master switch gene Sxl in Drosophila melanogaster |
| Q42772904 | Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain |
| Q36118451 | Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions |
| Q37319464 | Transcript processing and export kinetics are rate-limiting steps in expressing vertebrate segmentation clock genes. |
| Q39414832 | Transcription and splicing: when the twain meet |
| Q34461342 | Transcription-coupled RNA surveillance in human genetic diseases caused by splice site mutations |
| Q37828274 | Understanding splicing regulation through RNA splicing maps |
| Q37912004 | Where splicing joins chromatin. |
| Q37706395 | Whole genome DNA methylation: beyond genes silencing |
| Q92217036 | Writing a wrong: Coupled RNA polymerase II transcription and RNA quality control |
| Q47116845 | hnRNPM guides an alternative splicing program in response to inhibition of the PI3K/AKT/mTOR pathway in Ewing sarcoma cells |
| Q33865334 | m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover. |
| Q47340474 | pre-mRNA processing includes N6 methylation of adenosine residues that are retained in mRNA exons and the fallacy of "RNA epigenetics". |
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