scholarly article | Q13442814 |
P50 | author | Salvatore Spicuglia | Q55590537 |
Joaquin Zacarias Cabeza | Q57586671 | ||
Jean-Christophe Andrau | Q58148692 | ||
Pierre Cauchy | Q58883461 | ||
Marta Gut | Q92883604 | ||
Dirk Eick | Q96012668 | ||
Romain Fenouil | Q114778830 | ||
P2093 | author name string | Ivo Gut | |
Corinna Hintermair | |||
Frederic Koch | |||
Martin Heidemann | |||
Pierre Ferrier | |||
Thomas K Albert | |||
Albane Lamy de la Chapelle | |||
P2860 | cites work | A large fraction of extragenic RNA pol II transcription sites overlap enhancers | Q21145794 |
BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources | Q21183895 | ||
CpG islands recruit a histone H3 lysine 36 demethylase | Q24307738 | ||
Development and function of T cells in mice rendered interleukin-2 deficient by gene targeting | Q24318910 | ||
Core transcriptional regulatory circuitry in human embryonic stem cells | Q24322016 | ||
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters | Q24537436 | ||
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals | Q24630840 | ||
Combinatorial patterns of histone acetylations and methylations in the human genome | Q24647290 | ||
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets | Q24655245 | ||
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin | Q24673476 | ||
Fitting a mixture model by expectation maximization to discover motifs in biopolymers | Q27860556 | ||
High-resolution profiling of histone methylations in the human genome | Q27860906 | ||
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome | Q28131828 | ||
ChIP-seq accurately predicts tissue-specific activity of enhancers | Q28235102 | ||
Histone modifications at human enhancers reflect global cell-type-specific gene expression | Q28238467 | ||
Identification of a new cis-regulatory element of the terminal deoxynucleotidyl transferase gene in the 5' region of the murine locus | Q28248582 | ||
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters | Q28302903 | ||
Long noncoding RNAs with enhancer-like function in human cells | Q29614328 | ||
Widespread transcription at neuronal activity-regulated enhancers | Q29614330 | ||
Divergent transcription from active promoters | Q29614332 | ||
JASPAR: an open-access database for eukaryotic transcription factor binding profiles | Q29614419 | ||
Progression through the RNA polymerase II CTD cycle | Q29614782 | ||
Genome-wide analysis of mammalian promoter architecture and evolution | Q29616717 | ||
Frequency distribution of TATA Box and extension sequences on human promoters | Q33268930 | ||
Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome | Q33294656 | ||
Lineage-specific DNA methylation in T cells correlates with histone methylation and enhancer activity. | Q33459679 | ||
CD4/CD8-lineage differentiation in the thymus: from nuclear effectors to membrane signals | Q35824059 | ||
A T cell-specific enhancer is located in a DNase I-hypersensitive area at the 3' end of the CD3-delta gene | Q36063013 | ||
The role of enhancers as centres for general transcription factor recruitment. | Q36242528 | ||
At the crossroads: diverse roles of early thymocyte transcriptional regulators | Q36382771 | ||
Identification and characterization of a T-cell-specific enhancer adjacent to the murine CD4 gene | Q36747167 | ||
Long-range regulation of alpha-globin gene expression | Q37087582 | ||
CoCAS: a ChIP-on-chip analysis suite | Q37140347 | ||
Genome-wide RNA polymerase II: not genes only! | Q37158133 | ||
The basal initiation machinery: beyond the general transcription factors | Q37467909 | ||
The Ets-1 transcription factor is required for complete pre-T cell receptor function and allelic exclusion at the T cell receptor beta locus | Q37595701 | ||
A spectrum of gene regulatory phenomena at mammalian beta-globin gene loci | Q37629622 | ||
Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA. | Q38314036 | ||
A complex network of regulatory elements in Ikaros and their activity during hemo-lymphopoiesis | Q38355035 | ||
RSAT: regulatory sequence analysis tools | Q39786125 | ||
Promoter activation by enhancer-dependent and -independent loading of activator and coactivator complexes | Q42435164 | ||
A cis element in the recombination activating gene locus regulates gene expression by counteracting a distant silencer | Q47949602 | ||
A defined locus control region determinant links chromatin domain acetylation with long-range gene activation. | Q48678431 | ||
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. | Q51593177 | ||
Hierarchical interactions of control elements determine CD8alpha gene expression in subsets of thymocytes and peripheral T cells. | Q52182524 | ||
Multiple developmental stage-specific enhancers regulate CD8 expression in developing thymocytes and in thymus-independent T cells. | Q52182525 | ||
P433 | issue | 8 | |
P304 | page(s) | 956-963 | |
P577 | publication date | 2011-07-17 | |
P1433 | published in | Nature Structural & Molecular Biology | Q1071739 |
P1476 | title | Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters | |
P478 | volume | 18 |
Q40189006 | 'Lnc'-ing enhancers to MYC regulation |
Q89621483 | 4See: A Flexible Browser to Explore 4C Data |
Q92446141 | A Single Cell but Many Different Transcripts: A Journey into the World of Long Non-Coding RNAs |
Q37024235 | A threshold level of NFATc1 activity facilitates thymocyte differentiation and opposes notch-driven leukaemia development |
Q42367984 | ARS2 is a general suppressor of pervasive transcription |
Q35568449 | An anti-silencer- and SATB1-dependent chromatin hub regulates Rag1 and Rag2 gene expression during thymocyte development |
Q37299008 | An autonomous CEBPA enhancer specific for myeloid-lineage priming and neutrophilic differentiation |
Q22122150 | An integrated encyclopedia of DNA elements in the human genome |
Q38099943 | An update on recent methods applied for deciphering the diversity of the noncoding RNA genome structure and function |
Q34626036 | Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers |
Q26796369 | Architectural and Functional Commonalities between Enhancers and Promoters |
Q26865323 | Architecture and expression of the nfatc1 gene in lymphocytes |
Q52430543 | Assessing sufficiency and necessity of enhancer activities for gene expression and the mechanisms of transcription activation. |
Q66678776 | Beyond the Exome: The Non-coding Genome and Enhancers in Neurodevelopmental Disorders and Malformations of Cortical Development |
Q37401763 | Boosting transcription by transcription: enhancer-associated transcripts. |
Q88718519 | Characterization of noncoding regulatory DNA in the human genome |
Q38698881 | Chromatin Immunoprecipitation (ChIP) in Mouse T-cell Lines |
Q58541925 | Chromatin accessibility dynamics across development and ageing |
Q37289730 | Chromatin architecture underpinning transcription elongation |
Q33744682 | Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs |
Q38007358 | Chromatin signatures of active enhancers |
Q28083177 | Core promoters in transcription: old problem, new insights |
Q33723246 | Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers. |
Q34034120 | CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters |
Q35600094 | Deciphering the regulatory logic of an ancient, ultraconserved nuclear receptor enhancer module |
Q26777924 | Decoding the non-coding genome: elucidating genetic risk outside the coding genome |
Q36600950 | Dephosphorylating eukaryotic RNA polymerase II |
Q90663956 | Determinants of enhancer and promoter activities of regulatory elements |
Q59058533 | Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes |
Q38817874 | Divergent transcription and epigenetic directionality of human promoters |
Q35074692 | Divergent transcription is associated with promoters of transcriptional regulators |
Q93016720 | Diversity and Emerging Roles of Enhancer RNA in Regulation of Gene Expression and Cell Fate |
Q36158104 | Dynamic enhancer-gene body contacts during transcription elongation |
Q34045615 | Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation. |
Q42256986 | Dynamic transitions in RNA polymerase II density profiles during transcription termination |
Q26865277 | Enhancer RNAs and regulated transcriptional programs |
Q96230995 | Enhancer RNAs are an important regulatory layer of the epigenome |
Q38183529 | Enhancer RNAs: the new molecules of transcription |
Q47162405 | Enhancer SINEs Link Pol III to Pol II Transcription in Neurons. |
Q34624854 | Enhancer alterations in cancer: a source for a cell identity crisis |
Q92493381 | Enhancer and super-enhancer: Positive regulators in gene transcription |
Q38193691 | Enhancer biology and enhanceropathies |
Q39077355 | Enhancer transcribed RNAs arise from hypomethylated, Tet-occupied genomic regions. |
Q38394580 | Enhancer-associated RNAs as therapeutic targets |
Q38958989 | Enhancers and their dynamics during hematopoietic differentiation and emerging strategies for therapeutic action |
Q34046402 | Enhancers as non-coding RNA transcription units: recent insights and future perspectives |
Q35931823 | Enhancers: emerging roles in cell fate specification |
Q22121999 | Enhancers: five essential questions |
Q41252240 | Epigenetic regulation of the extrinsic oncosuppressor PTX3 gene in inflammation and cancer |
Q37315416 | Epigenomic profiling of primary gastric adenocarcinoma reveals super-enhancer heterogeneity |
Q38097110 | Epigenomics and the regulation of aging |
Q57232452 | Eukaryotic core promoters and the functional basis of transcription initiation |
Q38365224 | Eukaryotic enhancers: common features, regulation, and participation in diseases |
Q57029706 | Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies |
Q35590286 | Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells |
Q46261346 | Functional annotation of structural ncRNAs within enhancer RNAs in the human genome: implications for human disease. |
Q92560311 | Functional impacts of non-coding RNA processing on enhancer activity and target gene expression |
Q33676237 | Functional interactions of the RNA polymerase II-interacting proteins Gdown1 and TFIIF. |
Q37028376 | Functions of long noncoding RNAs in the nucleus |
Q33140157 | GT‐rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes |
Q52849456 | Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription. |
Q61797820 | Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation |
Q40685674 | Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues |
Q42800050 | Genome-wide characterization of mammalian promoters with distal enhancer functions |
Q41506952 | Genome-wide identification of novel intergenic enhancer-like elements: implications in the regulation of transcription in Plasmodium falciparum |
Q91683266 | HACER: an atlas of human active enhancers to interpret regulatory variants |
Q34043754 | High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. |
Q51796529 | Identification of Transcribed Enhancers by Genome-Wide Chromatin Immunoprecipitation Sequencing. |
Q30441416 | Identification of biologically relevant enhancers in human erythroid cells |
Q34998257 | Inactivation of intergenic enhancers by EBNA3A initiates and maintains polycomb signatures across a chromatin domain encoding CXCL10 and CXCL9 |
Q40646029 | Initiating RNA polymerase II and TIPs as hallmarks of enhancer activity and tissue-specificity |
Q36479035 | Integrator mediates the biogenesis of enhancer RNAs. |
Q36004601 | Junk DNA and the long non-coding RNA twist in cancer genetics. |
Q39120735 | Limb development: a paradigm of gene regulation |
Q26828561 | Long Intergenic Non-Coding RNAs: Novel Drivers of Human Lymphocyte Differentiation |
Q57179394 | Long Non-Coding RNA-Mediated Regulation of the Interferon Response: A New Perspective on a Familiar Theme |
Q47942929 | Long Noncoding RNA: Genome Organization and Mechanism of Action |
Q36394663 | Long non-coding RNAs in corticogenesis: deciphering the non-coding code of the brain |
Q36720404 | Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins |
Q33938960 | Long noncoding RNAs usher in a new era in the biology of enhancers |
Q57458213 | Macrophage-specific MHCII expression is regulated by a remote enhancer controlled by NFAT5 |
Q39012142 | Mapping the Phosphorylation Pattern of Drosophila melanogaster RNA Polymerase II Carboxyl-Terminal Domain Using Ultraviolet Photodissociation Mass Spectrometry |
Q26752329 | Mechanisms of long noncoding RNA function in development and disease |
Q26774972 | Molecular control of activation and priming in macrophages |
Q58713866 | Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation |
Q38094558 | Non-coding transcription at cis-regulatory elements: computational and experimental approaches. |
Q47099658 | Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes |
Q46815592 | Nuclear stability and transcriptional directionality separate functionally distinct RNA species |
Q38094436 | Predicting long non-coding RNAs using RNA sequencing |
Q64882504 | Production of Spliced Long Noncoding RNAs Specifies Regions with Increased Enhancer Activity. |
Q47808045 | Profiles of Long Noncoding RNAs in Human Naive and Memory T Cells |
Q38275663 | Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model. |
Q41135535 | Promoter type influences transcriptional topography by targeting genes to distinct nucleoplasmic sites |
Q35378833 | RNA transcribed from a distal enhancer is required for activating the chromatin at the promoter of the gonadotropin α-subunit gene. |
Q34089154 | RUNX1-dependent RAG1 deposition instigates human TCR-δ locus rearrangement |
Q39424726 | Recent advances in high-throughput approaches to dissect enhancer function |
Q37067108 | Recruitment of transcription complexes to enhancers and the role of enhancer transcription |
Q41734326 | Regulation of cancer epigenomes with a histone-binding synthetic transcription factor |
Q91292216 | Regulation of gene expression by cis-acting long non-coding RNAs |
Q38641320 | Regulatory Domains and Their Mechanisms |
Q57030049 | Repurposing of promoters and enhancers during mammalian evolution |
Q42320782 | SMADs and YAP compete to control elongation of β-catenin:LEF-1-recruited RNAPII during hESC differentiation. |
Q35050495 | Site- and allele-specific polycomb dysregulation in T-cell leukaemia |
Q39500409 | Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36. |
Q89837706 | Splicing of enhancer-associated lincRNAs contributes to enhancer activity |
Q34502652 | Stimulus-specific combinatorial functionality of neuronal c-fos enhancers |
Q39441366 | Super-Enhancer-Driven Transcriptional Dependencies in Cancer |
Q90017708 | Super-enhancer function and its application in cancer targeted therapy |
Q28661442 | Super-enhancers in the control of cell identity and disease |
Q39689800 | T-bet Activates Th1 Genes through Mediator and the Super Elongation Complex |
Q33858223 | Terminate and make a loop: regulation of transcriptional directionality |
Q37197820 | The Igf2/H19 muscle enhancer is an active transcriptional complex |
Q40330362 | The chromatin environment shapes DNA replication origin organization and defines origin classes |
Q48148100 | The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription |
Q47152412 | The effect of genetic variation on promoter usage and enhancer activity |
Q35191305 | The intriguing complexities of mammalian gene regulation: how to link enhancers to regulated genes. Are we there yet? |
Q37061192 | The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures |
Q35903450 | The many faces of long noncoding RNAs |
Q28081960 | The selection and function of cell type-specific enhancers |
Q48277455 | The worm has turned: unexpected similarities between the transcription of enhancers and promoters in the worm and mammalian genomes |
Q28728197 | Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation |
Q51827112 | Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. |
Q42106622 | Transcription factor binding at enhancers: shaping a genomic regulatory landscape in flux |
Q55263322 | Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities. |
Q91610618 | Transcriptional control by enhancers and enhancer RNAs |
Q39329012 | Transcriptional enhancers: Transcription, function and flexibility. |
Q37272025 | Transcriptional regulation of the Ikzf1 locus |
Q36348389 | Transcriptional regulatory logic of the diurnal cycle in the mouse liver |
Q61445278 | Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection |
Q46037062 | Trim24-repressed VL30 retrotransposons regulate gene expression by producing noncoding RNA. |
Q38903344 | Two possible modes of pioneering associated with combinations of H2A.Z and p300/CBP at nucleosome-occupied enhancers |
Q33703908 | Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells |
Q35351225 | Uncovering enhancer functions using the α-globin locus |
Q38636437 | Vascular Endothelial Regulation of Obesity-Associated Insulin Resistance |
Q26829133 | Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications |
Search more.