| scholarly article | Q13442814 |
| P50 | author | Kai Tan | Q77884909 |
| P2093 | author name string | Bing He | |
| P2860 | cites work | Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles | Q21145898 |
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| The GATA2 transcriptional network is requisite for RAS oncogene-driven non-small cell lung cancer | Q27851771 | ||
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| Integration of external signaling pathways with the core transcriptional network in embryonic stem cells | Q29547179 | ||
| Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
| Mapping and analysis of chromatin state dynamics in nine human cell types | Q29547552 | ||
| Network motifs: theory and experimental approaches | Q29615325 | ||
| The long-range interaction landscape of gene promoters | Q29615403 | ||
| Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation | Q29615949 | ||
| Architecture of the human regulatory network derived from ENCODE data | Q29617046 | ||
| Using Bayesian networks to analyze expression data | Q29617295 | ||
| Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data | Q29618517 | ||
| Reverse engineering of regulatory networks in human B cells | Q30004211 | ||
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| Spatiotemporal control of gene expression with pulse-generating networks. | Q30579452 | ||
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| Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks | Q30641188 | ||
| ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking | Q30646627 | ||
| Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data | Q31111868 | ||
| A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data | Q33205902 | ||
| Deciphering the transcriptional network of the dendritic cell lineage | Q37700905 | ||
| Emerging properties of animal gene regulatory networks | Q37821745 | ||
| Design principles of regulatory networks: searching for the molecular algorithms of the cell | Q38076910 | ||
| Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo | Q38304339 | ||
| Reconstructing dynamic regulatory maps | Q38305740 | ||
| Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4. | Q38313431 | ||
| Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function. | Q38855841 | ||
| Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. | Q39649034 | ||
| Conservation of trans-acting circuitry during mammalian regulatory evolution | Q39843784 | ||
| Least absolute regression network analysis of the murine osteoblast differentiation network | Q40342790 | ||
| Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity | Q42136153 | ||
| Circuitry and dynamics of human transcription factor regulatory networks | Q42150273 | ||
| Regulatory analysis of the C. elegans genome with spatiotemporal resolution | Q42429601 | ||
| Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits | Q42770081 | ||
| Computational discovery of gene modules and regulatory networks | Q44615395 | ||
| A gene-centered C. elegans protein-DNA interaction network | Q47594680 | ||
| Inferring subnetworks from perturbed expression profiles | Q47618074 | ||
| Genome-wide analysis of transcriptional regulators in human HSPCs reveals a densely interconnected network of coding and noncoding genes. | Q47708383 | ||
| A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription. | Q48449923 | ||
| Decision by committee: new light on the CD4/CD8-lineage choice | Q58615693 | ||
| Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information | Q33382271 | ||
| The transcriptional network for mesenchymal transformation of brain tumours. | Q33572162 | ||
| Modularity and design principles in the sea urchin embryo gene regulatory network | Q33606036 | ||
| Global view of enhancer-promoter interactome in human cells. | Q33694443 | ||
| Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements | Q33910269 | ||
| Reverse engineering gene networks using singular value decomposition and robust regression | Q34028331 | ||
| Discovering transcription factor regulatory targets using gene expression and binding data | Q34074703 | ||
| PU.1 inhibits the erythroid program by binding to GATA-1 on DNA and creating a repressive chromatin structure | Q34116913 | ||
| Constructing logical models of gene regulatory networks by integrating transcription factor-DNA interactions with expression data: an entropy-based approach | Q34118077 | ||
| The Coherent Feedforward Loop Serves as a Sign-sensitive Delay Element in Transcription Networks | Q34275513 | ||
| Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks | Q34278184 | ||
| A high-resolution map of the three-dimensional chromatin interactome in human cells | Q34378943 | ||
| TIGRESS: Trustful Inference of Gene REgulation using Stability Selection. | Q34485897 | ||
| NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth | Q34582832 | ||
| A comparative encyclopedia of DNA elements in the mouse genome | Q34700119 | ||
| Network component analysis: reconstruction of regulatory signals in biological systems | Q34788818 | ||
| Combinatorial binding predicts spatio-temporal cis-regulatory activity | Q35011328 | ||
| A cell-type-specific transcriptional network required for estrogen regulation of cyclin D1 and cell cycle progression in breast cancer | Q35052559 | ||
| Decoding the regulatory network of early blood development from single-cell gene expression measurements. | Q35218146 | ||
| A cis-regulatory map of the Drosophila genome. | Q35229726 | ||
| A core transcriptional network for early mesoderm development in Drosophila melanogaster | Q35649396 | ||
| Integration of regulatory networks by NKX3-1 promotes androgen-dependent prostate cancer survival | Q35665662 | ||
| The 8;21 translocation in leukemogenesis | Q35779709 | ||
| Identification of a dynamic core transcriptional network in t(8;21) AML that regulates differentiation block and self-renewal | Q35806108 | ||
| Reverse engineering of TLX oncogenic transcriptional networks identifies RUNX1 as tumor suppressor in T-ALL. | Q35816648 | ||
| Core transcriptional regulatory circuit controlled by the TAL1 complex in human T cell acute lymphoblastic leukemia. | Q36174127 | ||
| Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering | Q36700199 | ||
| Dynamic regulatory network controlling TH17 cell differentiation | Q36799525 | ||
| A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation | Q37129406 | ||
| Structure and evolution of the C. elegans embryonic endomesoderm network | Q37263501 | ||
| Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions | Q37309445 | ||
| Developmental gene regulatory networks in the zebrafish embryo | Q37320892 | ||
| Simplified models of biological networks | Q37700652 | ||
| P304 | page(s) | 101-108 | |
| P577 | publication date | 2016-03-04 | |
| P1433 | published in | Current Opinion in Genetics & Development | Q13505684 |
| P1476 | title | Understanding transcriptional regulatory networks using computational models | |
| P478 | volume | 37 |
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| Q89121242 | Widespread Effects of Chemokine 3' Untranslated Regions on mRNA Degradation and Protein Production in Human Cells |
| Q89514312 | scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles |
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