Genome-wide identification and characterisation of HOT regions in the human genome.

scientific article

Genome-wide identification and characterisation of HOT regions in the human genome. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1186/S12864-016-3077-4
P8608Fatcat IDrelease_cyon4zlacjhbnnnktxcjgwohym
P932PMC publication ID5025555
P698PubMed publication ID27633377

P50authorWenjie ShuQ54937138
P2093author name stringHao Li
Feng Liu
Xiaochen Bo
Chao Ren
P2860cites workIdentification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectQ21061203
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factorsQ21183997
An integrated encyclopedia of DNA elements in the human genomeQ22122150
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotesQ24538709
The accessible chromatin landscape of the human genomeQ24595581
UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactionsQ24607175
Functional annotation of HOT regions in the human genome: implications for human disease and cancer.Q35784256
BEDOPS: high-performance genomic feature operationsQ36076319
iFORM: Incorporating Find Occurrence of Regulatory MotifsQ36228406
Chromatin connections to pluripotency and cellular reprogrammingQ36874359
Global mapping of protein-DNA interactions in vivo by digital genomic footprintingQ37157318
Epigenomic analysis of multilineage differentiation of human embryonic stem cellsQ37205415
eRNAs promote transcription by establishing chromatin accessibility at defined genomic lociQ37205802
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regionsQ37309445
Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.Q37340291
The transcriptional and signalling networks of pluripotencyQ37871828
Reprogramming cellular identity for regenerative medicineQ37994281
Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sitesQ39109246
Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.Q39604123
Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cellsQ39840959
HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signatureQ41766976
Extreme HOT regions are CpG-dense promoters in C. elegans and humansQ42209149
Regulatory analysis of the C. elegans genome with spatiotemporal resolutionQ42429601
DNA-binding factors shape the mouse methylome at distal regulatory regionsQ42818364
Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.Q42972194
Molecular biology: A fly in the face of genomicsQ43984796
HS2 enhancer function is blocked by a transcriptional terminator inserted between the enhancer and the promoterQ45091142
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cellsQ46678698
Genetics. Revealing the dark matter of the genome.Q52713285
GENCODE: the reference human genome annotation for The ENCODE ProjectQ24608743
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identitiesQ24617969
miRBase: tools for microRNA genomicsQ24649872
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesQ27860739
A bivalent chromatin structure marks key developmental genes in embryonic stem cellsQ27860977
Insulators: exploiting transcriptional and epigenetic mechanismsQ28257767
High-resolution mapping and characterization of open chromatin across the genomeQ28266995
In vivo reprogramming of adult pancreatic exocrine cells to beta-cellsQ28292190
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
miRBase: annotating high confidence microRNAs using deep sequencing dataQ28660701
Super-enhancers in the control of cell identity and diseaseQ28661442
Landscape of transcription in human cellsQ29547467
Long noncoding RNAs with enhancer-like function in human cellsQ29614328
Widespread transcription at neuronal activity-regulated enhancersQ29614330
Control of the embryonic stem cell stateQ29614793
In vivo enhancer analysis of human conserved non-coding sequencesQ29616554
Selective inhibition of tumor oncogenes by disruption of super-enhancersQ29617301
Identification of functional elements and regulatory circuits by Drosophila modENCODEQ29617551
Master transcription factors and mediator establish super-enhancers at key cell identity genesQ29618062
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profilesQ29619342
Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genomeQ31076872
Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genomeQ33294656
Locus control regions: coming of age at a decade plusQ33739349
Identifying dispersed epigenomic domains from ChIP-Seq dataQ33821787
Forcing cells to change lineagesQ34020397
Transcriptional regulation and its misregulation in disease.Q34036033
Nuclease hypersensitive sites in chromatinQ34164152
Activating RNAs associate with Mediator to enhance chromatin architecture and transcriptionQ34328232
Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activationQ34348069
Transcription factor cooperativity in early adipogenic hotspots and super-enhancers.Q34421229
FIMO: scanning for occurrences of a given motifQ34729603
Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell linesQ35020492
Hotspots of transcription factor colocalization in the genome of Drosophila melanogasterQ35033165
An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscapeQ35086669
A cis-regulatory map of the Drosophila genome.Q35229726
Large-scale discovery of enhancers from human heart tissueQ35635739
P4510describes a project that usesggplot2Q326489
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)733
P577publication date2016-09-15
P1433published inBMC GenomicsQ15765854
P1476titleGenome-wide identification and characterisation of HOT regions in the human genome
P478volume17

Reverse relations

cites work (P2860)
Q38883044BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone.
Q46261346Functional annotation of structural ncRNAs within enhancer RNAs in the human genome: implications for human disease.
Q38921974Network Reconstruction Reveals that Valproic Acid Activates Neurogenic Transcriptional Programs in Adult Brain Following Traumatic Injury
Q47327363Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription
Q36228406iFORM: Incorporating Find Occurrence of Regulatory Motifs

Search more.