Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (scientific article)

cites work (P2860)

Q43129984	"Genes".
Q28744052	'Sciencenet'--towards a global search and share engine for all scientific knowledge
Q28756596	28-way vertebrate alignment and conservation track in the UCSC Genome Browser
Q28728229	29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome
Q24655376	3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA
Q33521098	3PD: Rapid design of optimal primers for chromosome conformation capture assays
Q42370429	5'-UTR G-quadruplex structures acting as translational repressors
Q56459678	5-Hydroxymethylcytosine alterations in the human postmortem brains of autism spectrum disorder
Q42723362	5-hydroxymethylcytosine, a modified mammalian DNA base with a potential regulatory role.
Q39048288	9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response
Q33886721	A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites
Q34153604	A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution
Q92879976	A Cohesin-Mediated Intrachromosomal Loop Drives Oncogenic ROR lncRNA to Accelerate Tumorigenesis
Q37005064	A Common Variant at the 14q32 Endometrial Cancer Risk Locus Activates AKT1 through YY1 Binding
Q34869496	A DNA variant within the MYO7A promoter regulates YY1 transcription factor binding and gene expression serving as a potential dominant DFNA11 auditory genetic modifier
Q36219945	A Highly Coupled Network of Tertiary Interactions in the SAM-I Riboswitch and Their Role in Regulatory Tuning
Q38557896	A Long Journey Ahead: Long Non-coding RNAs in Bacterial Infections.
Q90176608	A Long Non-coding RNA IVRPIE Promotes Host Antiviral Immune Responses Through Regulating Interferon β1 and ISG Expression
Q89474658	A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism
Q60927686	A Novel Approach Based on a Weighted Interactive Network to Predict Associations of MiRNAs and Diseases
Q90477586	A Novel Approach for Predicting Disease-lncRNA Associations Based on the Distance Correlation Set and Information of the miRNAs
Q64969464	A Novel Method for Predicting Disease-Associated LncRNA-MiRNA Pairs Based on the Higher-Order Orthogonal Iteration.
Q58567619	A Potential Competitive Endogenous RNA Pathway Involved in Chronic Spinal Cord Injury
Q33695729	A Review on Recent Computational Methods for Predicting Noncoding RNAs.
Q56991012	A STORY OF GROWING CONFUSION: GENES AND THEIR REGULATION
Q92446141	A Single Cell but Many Different Transcripts: A Journey into the World of Long Non-Coding RNAs
Q33703875	A Study of the Distribution of Phylogenetically Conserved Blocks within Clusters of Mammalian Homeobox Genes
Q42672429	A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcripts
Q90613596	A bioinformatics approach to identify novel long, non-coding RNAs in breast cancer cell lines from an existing RNA-sequencing dataset
Q30000980	A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
Q91560142	A bird's-eye view of Italian genomic variation through whole-genome sequencing
Q27001063	A brief review on the Human Encyclopedia of DNA Elements (ENCODE) project
Q24629627	A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Q34091811	A co-ordinated interaction between CTCF and ER in breast cancer cells
Q24681483	A code for transcription initiation in mammalian genomes
Q24632651	A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
Q37467116	A common copy number variation on chromosome 6 association with the gene expression level of endothelin 1 in transformed B lymphocytes from three racial groups
Q28661061	A common set of DNA regulatory elements shapes Drosophila appendages
Q33422937	A common variant associated with dyslexia reduces expression of the KIAA0319 gene
Q24652421	A common variant in the 3'UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder
Q34700119	A comparative encyclopedia of DNA elements in the mouse genome
Q33881890	A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling
Q39622262	A comprehensive in silico analysis of non-synonymous and regulatory SNPs of human MBL2 gene
Q38779860	A computational approach for the functional classification of the epigenome
Q21132374	A computational framework to infer human disease-associated long noncoding RNAs
Q27023231	A concise review on epigenetic regulation: insight into molecular mechanisms
Q28256361	A copy number variation map of the human genome
Q36240398	A cytosine-thymine (CT)-rich haplotype in intron 4 of SNCA confers risk for Lewy body pathology in Alzheimer's disease and affects SNCA expression.
Q36761159	A death-promoting role for ISG54/IFIT2
Q34163657	A decade's perspective on DNA sequencing technology
Q35178031	A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures
Q33363117	A feature-based approach to modeling protein-DNA interactions
Q55076813	A feedback loop consisting of RUNX2/LncRNA-PVT1/miR-455 is involved in the progression of colorectal cancer.
Q28714308	A fish-specific transposable element shapes the repertoire of p53 target genes in zebrafish
Q30876900	A functional analysis of the CREB signaling pathway using HaloCHIP-chip and high throughput reporter assays
Q33694123	A functional screen for regulatory elements that improve retroviral vector gene expression
Q34478334	A gene expression atlas of the domestic pig
Q21563499	A general definition and nomenclature for alternative splicing events
Q39356451	A generative model for the behavior of RNA polymerase
Q46748190	A genetic polymorphism in lincRNA-uc003opf.1 is associated with susceptibility to esophageal squamous cell carcinoma in Chinese populations
Q33826288	A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals candidate regulatory elements for genes coordinating epididymal function
Q28727907	A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function
Q38781922	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms
Q29417078	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype
Q34768431	A genome-wide comparison of the functional properties of rare and common genetic variants in humans
Q47665719	A genome-wide interactome of DNA-associated proteins in the human liver
Q34347741	A genome-wide regulatory framework identifies maize pericarp color1 controlled genes
Q24656746	A genomewide association study of citalopram response in major depressive disorder
Q38290836	A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation
Q34812433	A germline variant in the interferon regulatory factor 4 gene as a novel skin cancer risk locus
Q34349116	A glimpse into past, present, and future DNA sequencing.
Q36478003	A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network
Q34450425	A global genome segmentation method for exploration of epigenetic patterns
Q33668309	A global view of protein expression in human cells, tissues, and organs
Q37095266	A global view of transcriptional regulation by nuclear receptors: gene expression, factor localization, and DNA sequence analysis
Q41333816	A graphical modelling approach to the dissection of highly correlated transcription factor binding site profiles
Q36446183	A heterozygous IDH1R132H/WT mutation induces genome-wide alterations in DNA methylation.
Q33745562	A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat
Q42369661	A high resolution atlas of gene expression in the domestic sheep (Ovis aries).
Q33987644	A high resolution genome-wide scan of HNF4α recognition sites infers a regulatory gene network in colon cancer
Q21145782	A high-resolution anatomical atlas of the transcriptome in the mouse embryo
Q42321970	A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells
Q21145794	A large fraction of extragenic RNA pol II transcription sites overlap enhancers
Q37665457	A lincRNA-DYNLRB2-2/GPR119/GLP-1R/ABCA1-dependent signal transduction pathway is essential for the regulation of cholesterol homeostasis
Q35833239	A long natural-antisense RNA is accumulated in the conidia of Aspergillus oryzae
Q29614326	A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
Q28509769	A long noncoding RNA mediates both activation and repression of immune response genes
Q52339846	A long noncoding RNA promotes cellulase expression in Trichoderma reesei.
Q33687905	A map of open chromatin in human pancreatic islets
Q29615404	A map of the cis-regulatory sequences in the mouse genome
Q41425687	A model of evolution and structure for multiple sequence alignment
Q38378667	A molecular conundrum involving hypothalamic responses to and roles of long non-coding RNAs following food deprivation
Q34053870	A motif-independent metric for DNA sequence specificity.
Q33628922	A mouse tissue transcription factor atlas
Q24657435	A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
Q60310760	A natural antisense lncRNA controls breast cancer progression by promoting tumor suppressor gene mRNA stability
Q45987241	A natural history of FUT2 polymorphism in humans.
Q35194634	A network of RNA and protein interactions in Fronto Temporal Dementia
Q37379744	A new link between epigenetic progenitor lesions in cancer and the dynamics of signal transduction.
Q33520368	A new measurement of sequence conservation
Q33528382	A new strategy for genome assembly using short sequence reads and reduced representation libraries
Q36804825	A novel DNA sequence database for analyzing human demographic history
Q36248469	A novel MeCP2 acetylation site regulates interaction with ATRX and HDAC1.
Q35022483	A novel RNA in situ hybridization assay for the long noncoding RNA SChLAP1 predicts poor clinical outcome after radical prostatectomy in clinically localized prostate cancer
Q21562300	A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome
Q38377228	A novel computational model based on super-disease and miRNA for potential miRNA-disease association prediction
Q38882922	A novel long noncoding RNA LINC01133 is upregulated in lung squamous cell cancer and predicts survival
Q38988228	A novel long-range enhancer regulates postnatal expression of Zeb2: implications for Mowat-Wilson syndrome phenotypes
Q36740740	A novel noncoding RNA processed by Drosha is restricted to nucleus in mouse
Q37719164	A novel regulatory network among LncRpa, CircRar1, MiR-671 and apoptotic genes promotes lead-induced neuronal cell apoptosis
Q33327606	A novel representation of RNA secondary structure based on element-contact graphs
Q50422080	A novel variant associated with HDL-C levels by modifying DAGLB expression levels: An annotation-based genome-wide association study.
Q36166673	A novel variant on chromosome 6p21.1 is associated with the risk of developing colorectal cancer: a two-stage case-control study in Han Chinese
Q35288950	A nucleolar protein, H19 opposite tumor suppressor (HOTS), is a tumor growth inhibitor encoded by a human imprinted H19 antisense transcript.
Q34210459	A p53-dependent promoter associated with polymorphic tandem repeats controls the expression of a viral transcript encoding clustered microRNAs
Q41736003	A periodic pattern of SNPs in the human genome
Q36262493	A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients
Q33710067	A potential role for intragenic miRNAs on their hosts' interactome.
Q38838102	A predictive modeling approach for cell line-specific long-range regulatory interactions
Q38512987	A probabilistic generative model for GO enrichment analysis
Q36993194	A quality assessment of genetic association studies supporting susceptibility and outcome in acute lung injury
Q33818821	A quantitative model of transcriptional regulation reveals the influence of binding location on expression
Q28756249	A recurrent inversion on the eutherian X chromosome
Q33313456	A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.
Q21030654	A revised nomenclature for transcribed human endogenous retroviral loci
Q39446385	A role for insulator elements in the regulation of gene expression response to hypoxia
Q84865221	A role for the MS analysis of nucleic acids in the post-genomics age
Q45004431	A scalable and flexible approach for investigating the genomic landscapes of phylogenetic incongruence
Q34471646	A small, variable, and irregular killer cell Ig-like receptor locus accompanies the absence of MHC-C and MHC-G in gibbons
Q42588671	A spatial and temporal map of C. elegans gene expression
Q28305422	A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets
Q80694619	A step forward for restless legs syndrome
Q34128521	A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
Q49570765	A systematic analysis highlights multiple long non-coding RNAs associated with cardiometabolic disorders.
Q42537912	A systematic approach to identify functional motifs within vertebrate developmental enhancers.
Q35870195	A systematic approach to understand the functional consequences of non-protein coding risk regions
Q33785737	A systematic enhancer screen using lentivector transgenesis identifies conserved and non-conserved functional elements at the Olig1 and Olig2 locus
Q35210901	A systematic evaluation of short tandem repeats in lipid candidate genes: riding on the SNP-wave
Q41889818	A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs.
Q33772837	A thymus-specific noncoding RNA, Thy-ncR1, is a cytoplasmic riboregulator of MFAP4 mRNA in immature T-cell lines
Q28681689	A tiered hidden Markov model characterizes multi-scale chromatin states
Q33929606	A tissue-specific landscape of sense/antisense transcription in the mouse intestine
Q31140817	A transcription factor hierarchy defines an environmental stress response network
Q33432300	A transcriptional sketch of a primary human breast cancer by 454 deep sequencing
Q51929568	A transposon-based chromosomal engineering method to survey a large cis-regulatory landscape in mice.
Q21092716	A user's guide to the encyclopedia of DNA elements (ENCODE)
Q43594403	A variant near the melanocortin-4 receptor gene regulates postprandial lipid metabolism in a healthy Caucasian population.
Q36667799	A virally encoded small peptide regulates RTA stability and facilitates Kaposi's sarcoma-associated herpesvirus lytic replication
Q37964772	A vision for a biomedical cloud.
Q24658122	A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts
Q34897211	A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks
Q38905862	AB209630, a long non-coding RNA decreased expression in hypopharyngeal squamous cell carcinoma, influences proliferation, invasion, metastasis, and survival
Q33829467	ACT: aggregation and correlation toolbox for analyses of genome tracks.
Q38126479	ALREX-elements and introns: two identity elements that promote mRNA nuclear export
Q36491323	APPRIS: annotation of principal and alternative splice isoforms
Q93892192	ARTICLE WATCH
Q41433486	ASSIMILATOR: a new tool to inform selection of associated genetic variants for functional studies
Q30410198	ATR checkpoint kinase and CRL1βTRCP collaborate to degrade ASF1a and thus repress genes overlapping with clusters of stalled replication forks
Q37442748	Aberrant DNA hypermethylation-silenced SOX21-AS1 gene expression and its clinical importance in oral cancer.
Q39148572	Aberrant TAL1 activation is mediated by an interchromosomal interaction in human T-cell acute lymphoblastic leukemia
Q89687445	Aberrant expression of long non-coding RNAs (lncRNAs) is involved in brain glioma development
Q56891180	Abstracts of the 11th Annual UT-ORNL-KBRIN Bioinformatics Summit 2012. Louisville, Kentucky, USA. March 30-April 1, 2012
Q36915070	Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
Q36240287	Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
Q30898472	Accurate inference of isoforms from multiple sample RNA-Seq data.
Q24614616	Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
Q24641887	Accurate whole human genome sequencing using reversible terminator chemistry
Q36315750	Acetylated histone H3 and H4 mark the upregulated LMP2A promoter of Epstein-Barr virus in lymphoid cells
Q50885121	Acetylation on histone H3 lysine 9 mediates a switch from transcription initiation to elongation.
Q34328232	Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
Q34713712	Activation of DNA damage response signaling by condensed chromatin
Q28247627	Activation of alternative Jdp2 promoters and functional protein isoforms in T-cell lymphomas by retroviral insertion mutagenesis
Q34277532	Activation of the carbon concentrating mechanism by CO2 deprivation coincides with massive transcriptional restructuring in Chlamydomonas reinhardtii.
Q34129576	Active DNA demethylation: many roads lead to Rome.
Q42035089	Adaptive evolution of UGT2B17 copy-number variation
Q42734415	Additional layers of gene regulatory complexity from recently discovered microRNA mechanisms
Q57158379	Adenoviromics: Mining the Human Adenovirus Species D Genome
Q28741608	Advanced computational biology methods identify molecular switches for malignancy in an EGF mouse model of liver cancer
Q33840345	Advanced methods for the analysis of chromatin-associated proteins.
Q35709124	Advances in epigenetics and epigenomics for neurodegenerative diseases
Q49018891	Age-Related Expression of a Repeat-Rich Intergenic Long Noncoding RNA in the Rat Brain.
Q36766079	Aging by epigenetics--a consequence of chromatin damage?
Q22241964	Alcoholism: A Systems Approach From Molecular Physiology to Addictive Behavior
Q33419102	Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution
Q24658520	Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
Q34062101	Allele-specific FKBP5 DNA demethylation mediates gene-childhood trauma interactions
Q37408201	Allele-specific chromatin remodeling in the ZPBP2/GSDMB/ORMDL3 locus associated with the risk of asthma and autoimmune disease.
Q35225247	Allele-specific distribution of RNA polymerase II on female X chromosomes
Q24655104	Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation
Q35526123	AlleleSeq: analysis of allele-specific expression and binding in a network framework
Q34565579	Alleles in the HtrA serine peptidase 1 gene alter the risk of neovascular age-related macular degeneration
Q34059809	Altered microRNA expression in frontotemporal lobar degeneration with TDP-43 pathology caused by progranulin mutations
Q37578769	Alternative splicing during Arabidopsis flower development results in constitutive and stage-regulated isoforms
Q38292530	Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis
Q33519498	Alu and b1 repeats have been selectively retained in the upstream and intronic regions of genes of specific functional classes
Q34085123	An 8q24 gene desert variant associated with prostate cancer risk confers differential in vivo activity to a MYC enhancer
Q47901543	An International Laboratory for Systems and Computational Neuroscience
Q42621989	An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma.
Q33518463	An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data
Q24614360	An atlas of the Epstein-Barr virus transcriptome and epigenome reveals host-virus regulatory interactions
Q35921154	An enhancer from the 8q24 prostate cancer risk region is sufficient to direct reporter gene expression to a subset of prostate stem-like epithelial cells in transgenic mice
Q34000857	An enhancer polymorphism at the cardiomyocyte intercalated disc protein NOS1AP locus is a major regulator of the QT interval
Q33345230	An evolutionarily conserved sexual signature in the primate brain
Q47073861	An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation.
Q34682675	An evolutionary and developmental perspective
Q34079396	An evolving view of epigenetic complexity in the brain
Q22122150	An integrated encyclopedia of DNA elements in the human genome
Q95660427	An integrated multi-omics approach identifies the landscape of interferon-α-mediated responses of human pancreatic beta cells
Q36119908	An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors
Q24655589	An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
Q33382059	An integrated software system for analyzing ChIP-chip and ChIP-seq data
Q35086669	An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape
Q38820649	An interaction proteomics survey of transcription factor binding at recurrent TERT promoter mutations
Q30484692	An optimized procedure for the design and evaluation of Ecotilling assays
Q37608793	An overview of recent developments in genomics and associated statistical methods
Q38099943	An update on recent methods applied for deciphering the diversity of the noncoding RNA genome structure and function
Q41979389	AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource
Q35840707	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
Q47770082	Analysis and Annotation of Whole-Genome or Whole-Exome Sequencing Derived Variants for Clinical Diagnosis
Q43590500	Analysis and annotation of whole-genome or whole-exome sequencing-derived variants for clinical diagnosis
Q92372112	Analysis of Survival-Related lncRNA Landscape Identifies A Role for LINC01537 in Energy Metabolism and Lung Cancer Progression
Q39848269	Analysis of a t(18;21)(p11.1;p11.1) translocation in a family with schizophrenia
Q34249565	Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation
Q42638414	Analysis of four-way junctions in RNA structures
Q28740767	Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project
Q33556086	Analysis of human CYP1A1 and CYP1A2 genes and their shared bidirectional promoter in eight world populations
Q37417717	Analysis of in vitro insulin-resistance models and their physiological relevance to in vivo diet-induced adipose insulin resistance
Q33948991	Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools
Q36949047	Analysis of intergenic transcription and histone modification across the human immunoglobulin heavy-chain locus
Q92035395	Analysis of lncRNA-miRNA-mRNA Interactions in Hyper-proliferative Human Pulmonary Arterial Smooth Muscle Cells
Q36775456	Analysis of long-range interactions in primary human cells identifies cooperative CFTR regulatory elements
Q28755362	Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences
Q24673569	Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1
Q37948799	Analysis of primary structure of chromatin with next-generation sequencing
Q33312848	Analysis of sequence conservation at nucleotide resolution
Q33750087	Analysis of the 10q11 cancer risk locus implicates MSMB and NCOA4 in human prostate tumorigenesis
Q33366557	Analysis of transposon interruptions suggests selection for L1 elements on the X chromosome
Q64442692	Androgen and Oestrogen Affect the Expression of Long Non-Coding RNAs During Phallus Development in a Marsupial
Q35176984	Androgen receptor driven transcription in molecular apocrine breast cancer is mediated by FoxA1.
Q38762346	Androgen-induced Long Noncoding RNA (lncRNA) SOCS2-AS1 Promotes Cell Growth and Inhibits Apoptosis in Prostate Cancer Cells
Q37543845	Aneuploidy: from a physiological mechanism of variance to Down syndrome
Q42507422	Annotating conserved and novel features of primate transcriptomes using sequencing
Q34023095	Annotating non-coding regions of the genome
Q37387944	Annotating non-coding transcription using functional genomics strategies.
Q34209592	Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
Q36990734	Annotation of tertiary interactions in RNA structures reveals variations and correlations
Q37955073	Annotation of the domestic dog genome sequence: finding the missing genes
Q28748444	Antarctic notothenioid fishes: genomic resources and strategies for analyzing an adaptive radiation
Q39664050	Antiapoptotic function of charged multivesicular body protein 5: A potentially relevant gene in acute myeloid leukemia
Q31166222	Antibodypedia, a portal for sharing antibody and antigen validation data
Q35607134	Antisense RNA controls LRP1 Sense transcript expression through interaction with a chromatin-associated protein, HMGB2
Q34715161	Antisense expression increases gene expression variability and locus interdependency
Q37320544	Antisense oligonucleotide mediated therapy of spinal muscular atrophy
Q28272333	Antisense transcription in gammaretroviruses as a mechanism of insertional activation of host genes
Q36952980	Antisense transcripts are targets for activating small RNAs
Q64110537	Applications of ENCODE data to Systematic Analyses via Data Integration
Q34383048	Applications of alignment-free methods in epigenomics
Q34539515	Applying genome-wide gene-based expression quantitative trait locus mapping to study population ancestry and pharmacogenetics
Q37112503	Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes
Q33604860	Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.
Q26796369	Architectural and Functional Commonalities between Enhancers and Promoters
Q35867143	Argonaute and the nuclear RNAs: new pathways for RNA-mediated control of gene expression
Q37105909	Assaying the regulatory potential of mammalian conserved non-coding sequences in human cells
Q44769045	Assessing both genetic variation (SNPs/CNVs) and gene-environment interactions may lead to personalized gastric cancer prevention
Q33769725	Assessing computational methods of cis-regulatory module prediction
Q35101492	Assessing the impact of human genome annotation choice on RNA-seq expression estimates
Q33418306	Association and haplotype analyses of positional candidate genes in five genomic regions linked to scrotal hernia in commercial pig lines
Q47105467	Association between genetic polymorphisms of long non-coding RNA PRNCR1 and prostate cancer risk in a sample of the Iranian population
Q30360945	Association of Forced Vital Capacity with the Developmental Gene NCOR2.
Q35012624	Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus
Q53370941	Association of common variants in TOMM40/APOE/APOC1 region with human longevity in a Chinese population.
Q28943463	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium
Q53670271	Associations between polymorphisms of HOTAIR and risk of gastric cardia adenocarcinoma in a population of north China.
Q44191009	Associations between variants near a monoaminergic pathways gene (PHOX2B) and amygdala reactivity: a genome-wide functional imaging study
Q21267236	Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend
Q36893097	Authorship: why not just toss a coin?
Q41898357	Automated identification of RNA 3D modules with discriminative power in RNA structural alignments
Q36844430	Automated mapping of large-scale chromatin structure in ENCODE
Q28251370	Autophagy driven by a master regulator of hematopoiesis
Q24634217	BMI1 is recruited to DNA breaks and contributes to DNA damage-induced H2A ubiquitination and repair
Q59136386	BPLLDA: Predicting lncRNA-Disease Associations Based on Simple Paths With Limited Lengths in a Heterogeneous Network
Q36021702	BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration
Q41694107	BRWLDA: bi-random walks for predicting lncRNA-disease associations
Q36796433	Back to the origin: reconsidering replication, transcription, epigenetics, and cell cycle control
Q38345727	Basal core promoters control the equilibrium between negative cofactor 2 and preinitiation complexes in human cells
Q37217525	Bayesian refinement of association signals for 14 loci in 3 common diseases
Q34094010	Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases
Q33822676	Benefits of random-priming: exhaustive survey of a cDNA library from lung tissue of a SARS patient
Q52559580	Beyond mRNA: The role of non-coding RNAs in normal and aberrant hematopoiesis.
Q26862414	Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution
Q33530851	Beyond the HapMap Genotypic Data: Prospects of Deep Resequencing Projects
Q33307531	Beyond the gene
Q29614766	Bidirectional promoters generate pervasive transcription in yeast
Q36204353	Big (sequencing) future of non-coding RNA research for the understanding of cocaine
Q27350595	Big genomes facilitate the comparative identification of regulatory elements
Q30415446	Binary Interval Search: a scalable algorithm for counting interval intersections
Q57248453	Bioinformatic Software Developments in Spain
Q30395256	Bioinformatics and Drug Discovery
Q37079445	Bioinformatics and cancer research: building bridges for translational research
Q57267877	Bioinformatics for High-Throughput Toxico-Epigenomics Studies
Q64928314	Bioinformatics identification of lncRNA biomarkers associated with the progression of esophageal squamous cell carcinoma.
Q28710308	Bioinformatics of Cancer ncRNA in High Throughput Sequencing: Present State and Challenges
Q26822725	Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis
Q37886659	Biomarkers for the prediction of type 2 diabetes and cardiovascular disease
Q90458011	Blocking LINC00152 suppresses glioblastoma malignancy by impairing mesenchymal phenotype through the miR-612/AKT2/NF-κB pathway
Q24630508	Blood pressure loci identified with a gene-centric array
Q36131672	BmncRNAdb: a comprehensive database of non-coding RNAs in the silkworm, Bombyx mori
Q37401763	Boosting transcription by transcription: enhancer-associated transcripts.
Q33730924	Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain
Q34374480	Bovine ncRNAs are abundant, primarily intergenic, conserved and associated with regulatory genes
Q46007895	Breaking free from the chains of pathway annotation: de novo pathway discovery for the analysis of disease processes.
Q37569928	Breast Cancer Malignant Processes are Regulated by Pax-5 Through the Disruption of FAK Signaling Pathways
Q38765793	Breast cancer stem cells programs: enter the (non)-code.
Q38092646	Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models
Q27314001	Broad epigenetic signature of maternal care in the brain of adult rats
Q30430861	Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription
Q30413341	Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins
Q28066025	Building an RNA Sequencing Transcriptome of the Central Nervous System
Q38341537	Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.
Q24298149	C6orf176: a novel possible regulator of cAMP-mediated gene expression
Q87248345	CCAT2 is a lung adenocarcinoma-specific long non-coding RNA and promotes invasion of non-small cell lung cancer
Q93040670	CDK-Mediator and FBXL19 prime developmental genes for activation by promoting atypical regulatory interactions
Q36084308	CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins
Q33640298	CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression
Q35047609	CIRI: an efficient and unbiased algorithm for de novo circular RNA identification.
Q38313487	CLIP: viewing the RNA world from an RNA-protein interactome perspective.
Q41902591	CORUM: the comprehensive resource of mammalian protein complexes
Q52427463	CRISPR/Cas9-mediated deletion of lncRNA Gm26878 in the distant Foxf1 enhancer region.
Q30430339	CRL4(Cdt2) regulates cell proliferation and histone gene expression by targeting PR-Set7/Set8 for degradation
Q28249503	CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
Q34530550	CTF: a CRF-based transcription factor binding sites finding system
Q38972115	Calculating Higher-Order Moments of Phylogenetic Stochastic Mapping Summaries in Linear Time
Q34051772	Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
Q63188933	Cancer stem cell-associated microRNAs: searching for markers and targets in hepatocellular carcinoma
Q38874534	Cancer. The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer.
Q43123105	Canine Mammary Carcinomas: A Comparative Analysis of Altered Gene Expression
Q28744480	Cardiovascular genomics, personalized medicine, and the National Heart, Lung, and Blood Institute: part I: the beginning of an era
Q37463403	Cardiovascular translational medicine (IV): The genetic basis of malignant arrhythmias and cardiomyopathies.
Q34964589	Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
Q33303668	Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor.
Q33744631	Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs
Q64075894	Cell-Selective Regulation of CFTR Gene Expression: Relevance to Gene Editing Therapeutics
Q24651915	Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers
Q39996434	Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
Q34365955	Cell-type specificity of ChIP-predicted transcription factor binding sites
Q34020234	Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene
Q34078388	Cellular adhesion gene SELP is associated with rheumatoid arthritis and displays differential allelic expression
Q46179887	Cellular, physiological and pathological aspects of the long non-coding RNA NEAT1.
Q36709762	Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons.
Q39303678	Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells
Q34394806	ChIA-PET analysis of transcriptional chromatin interactions.
Q37402654	ChIP'ing the mammalian genome: technical advances and insights into functional elements
Q28291198	ChIP-Seq identification of weakly conserved heart enhancers
Q33718807	ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites
Q39766038	ChIP-chip analysis of neurexins and other candidate genes for addiction and neuropsychiatric disorders
Q28235102	ChIP-seq accurately predicts tissue-specific activity of enhancers
Q38855307	ChIP-seq reveals cell type-specific binding patterns of BMP-specific Smads and a novel binding motif
Q29615336	ChIP-seq: advantages and challenges of a maturing technology
Q34368738	ChIPnorm: a statistical method for normalizing and identifying differential regions in histone modification ChIP-seq libraries.
Q57167693	Challenges and Approaches to Predicting RNA with Multiple Functional Structures
Q34539646	Chapter 12: Human microbiome analysis
Q43954038	Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis
Q34472208	Characteristics of de novo structural changes in the human genome
Q37293212	Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome
Q38457243	Characterization and machine learning prediction of allele-specific DNA methylation.
Q41877467	Characterization and regulation of the hb9/mnx1 beta-cell progenitor specific enhancer in zebrafish
Q55269381	Characterization of Transcription Termination-Associated RNAs: New Insights into their Biogenesis, Tailing, and Expression in Primary Tumors.
Q52659215	Characterization of dysregulated lncRNA-mRNA network based on ceRNA hypothesis to reveal the occurrence and recurrence of myocardial infarction.
Q37235487	Characterization of human epigenomes
Q28660423	Characterization of human pseudogene-derived non-coding RNAs for functional potential
Q38298690	Characterization of pancreatic transcription factor Pdx-1 binding sites using promoter microarray and serial analysis of chromatin occupancy
Q33940935	Characterization of the RNA content of chromatin
Q42243001	Characterization of the intronic portion of cadherin superfamily members, common cancer orchestrators
Q41050897	Characterization of transcription start sites of putative non-coding RNAs by multifaceted use of massively paralleled sequencer
Q38737055	Characters, functions and clinical perspectives of long non-coding RNAs
Q39784592	Charting a course for genomic medicine from base pairs to bedside
Q29620707	Charting histone modifications and the functional organization of mammalian genomes
Q30870920	ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts
Q39144538	ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions.
Q30577119	ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.
Q26853446	Child development and molecular genetics: 14 years later
Q31152527	ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data
Q34275201	Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts
Q34477489	Choosing the Right Tool for the Job: RNAi, TALEN, or CRISPR.
Q26799886	Chromatin Dynamics in the Regulation of CFTR Expression
Q47659201	Chromatin Immunoprecipitation of Skeletal Muscle Tissue
Q37040274	Chromatin and DNA replication
Q38114411	Chromatin and epigenetic features of long-range gene regulation
Q26825836	Chromatin architecture defines the glucocorticoid response
Q36460959	Chromatin immunoprecipitation in adult zebrafish red cells
Q35075589	Chromatin modifications and genomic contexts linked to dynamic DNA methylation patterns across human cell types
Q35909653	Chromatin occupancy analysis reveals genome-wide GATA factor switching during hematopoiesis
Q36859258	Chromatin profiling across the human tumour necrosis factor gene locus reveals a complex, cell type-specific landscape with novel regulatory elements
Q42778020	Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers.
Q38793084	Chromatin remodeling effects on enhancer activity
Q38007358	Chromatin signatures of active enhancers
Q34548240	Chromatin signatures of the Drosophila replication program
Q36794035	Chromatin state maps: new technologies, new insights
Q34170920	Chromatin states accurately classify cell differentiation stages
Q37141498	Chromatin structure and the inheritance of epigenetic information
Q28756588	Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
Q37374136	Chromatin-associated ncRNA activities
Q24307883	Chromatin-bound IκBα regulates a subset of polycomb target genes in differentiation and cancer
Q33847675	Chromosome conformation capture uncovers potential genome-wide interactions between human conserved non-coding sequences
Q47115165	Circular Mitochondrial DNA: A Geant4-DNA User Application for Evaluating Radiation-induced Damage in Circular Mitochondrial DNA.
Q36700678	Circular RNA enrichment in platelets is a signature of transcriptome degradation
Q38432168	Circular RNAs play an important role in late-stage gastric cancer: Circular RNA expression profiles and bioinformatics analyses
Q64972007	Circulating HOTAIR RNA Is Potentially Up-regulated in Coronary Artery Disease.
Q34778143	Circulating microRNA signature in non-alcoholic fatty liver disease: from serum non-coding RNAs to liver histology and disease pathogenesis
Q24655354	Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells
Q38058250	Cis-acting noncoding RNAs: friends and foes
Q37343922	Cis-regulatory mutations in human disease
Q37102652	Cis-regulatory variation is typically polyallelic in Drosophila
Q28727255	Cistrome plasticity and mechanisms of cistrome reprogramming
Q55299954	Classification of Transcription Boundary-Associated RNAs (TBARs) in Animals and Plants.
Q21183997	Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
Q37314487	Clinically available pharmacogenomics tests
Q34083278	Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements
Q35145504	Coassembly of REST and its cofactors at sites of gene repression in embryonic stem cells.
Q47637522	Cocaine alters Homer1 natural antisense transcript in the nucleus accumbens
Q24294499	Codanin-1 mutations in congenital dyserythropoietic anemia type 1 affect HP1{alpha} localization in erythroblasts
Q42610549	Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes
Q34158533	CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences
Q37111303	Coherent but overlapping expression of microRNAs and their targets during vertebrate development
Q35091271	Coherent functional modules improve transcription factor target identification, cooperativity prediction, and disease association
Q30431896	Cohesin organizes chromatin loops at DNA replication factories.
Q37137926	Collective behavior in gene regulation: metabolic clocks and cross-talking
Q57279723	Colocalization analyses of genomic elements: approaches, recommendations and challenges
Q35017822	Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering.
Q33622736	Combinatorial control of suicide gene expression by tissue-specific promoter and microRNA regulation for cancer therapy
Q42770081	Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits
Q35852758	Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
Q24647290	Combinatorial patterns of histone acetylations and methylations in the human genome
Q34582354	Combined ChIP-Seq and transcriptome analysis identifies AP-1/JunD as a primary regulator of oxidative stress and IL-1β synthesis in macrophages
Q30664860	Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome
Q36201224	Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
Q38484704	Combining animal personalities with transcriptomics resolves individual variation within a wild-type zebrafish population and identifies underpinning molecular differences in brain function
Q37873547	Commentary: will analyzing the epigenome yield cohesive principles of ethanol teratology?
Q35882541	Common genetic variants in the PSCA gene influence gene expression and bladder cancer risk
Q29614882	Common regulatory variation impacts gene expression in a cell type-dependent manner
Q34263078	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma
Q42165706	Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture
Q47177746	Comparative RNA Genomics
Q26778783	Comparative Transcriptomes and EVO-DEVO Studies Depending on Next Generation Sequencing
Q34091481	Comparative analysis of human protein-coding and noncoding RNAs between brain and 10 mixed cell lines by RNA-Seq.
Q34045466	Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression
Q30597594	Comparative annotation of functional regions in the human genome using epigenomic data
Q34179692	Comparative epigenomic analysis of murine and human adipogenesis
Q42718687	Comparative epigenomics in distantly related teleost species identifies conserved cis-regulatory nodes active during the vertebrate phylotypic period
Q26992001	Comparative genomics as a tool to understand evolution and disease
Q36388822	Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
Q34469236	Comparative genomics of neuroglobin reveals its early origins
Q36179867	Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function
Q35221430	Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies
Q35673975	Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction
Q33747657	Comparison of REST cistromes across human cell types reveals common and context-specific functions
Q33890984	Comparison of long non‑coding RNAs, microRNAs and messenger RNAs involved in initiation and progression of esophageal squamous cell carcinoma
Q35534941	Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved
Q33483748	Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis.
Q36436964	Complex effects of nucleotide variants in a mammalian cis-regulatory element.
Q33680184	Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution
Q37147179	Complex genetics of obesity in mouse models
Q31113363	Complex genomic interactions in the dynamic regulation of transcription by the glucocorticoid receptor
Q33398161	Complex nature of SNP genotype effects on gene expression in primary human leucocytes
Q37018410	Complexities of gammaherpesvirus transcription revealed by microarrays and RNAseq
Q33797835	Composite effects of polymorphisms near multiple regulatory elements create a major-effect QTL
Q34024454	Composition and regulation of maternal and zygotic transcriptomes reflects species-specific reproductive mode
Q47845318	Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome.
Q33399905	Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome
Q36121589	Comprehensive Transcriptome Analyses of the Fructose-Fed Syrian Golden Hamster Liver Provides Novel Insights into Lipid Metabolism.
Q42697364	Comprehensive analysis of circRNA expression profiles in humans by RAISE.
Q92201065	Comprehensive analysis of competing endogenous RNA network and 3-mRNA signature predicting survival in papillary renal cell cancer
Q33869653	Comprehensive analysis of transcript start sites in ly49 genes reveals an unexpected relationship with gene function and a lack of upstream promoters
Q50027269	Comprehensive characterisation of compartment-specific long non-coding RNAs associated with pancreatic ductal adenocarcinoma.
Q34975754	Comprehensive characterization of erythroid-specific enhancers in the genomic regions of human Krüppel-like factors
Q34239260	Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
Q31076872	Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome
Q35886598	Comprehensive resequence analysis of a 123-kb region of chromosome 11q13 associated with prostate cancer
Q42081959	Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development
Q24599149	Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea
Q33999125	Computation for ChIP-seq and RNA-seq studies
Q38532043	Computational Approaches for the Analysis of ncRNA through Deep Sequencing Techniques
Q55204066	Computational Methods for Assessing Chromatin Hierarchy.
Q89920226	Computational Models in Non-Coding RNA and Human Disease
Q30837098	Computational RNomics of drosophilids
Q37769476	Computational RNomics: structure identification and functional prediction of non-coding RNAs in silico
Q35853471	Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs
Q27014185	Computational analysis of noncoding RNAs
Q34110365	Computational analysis of tissue-specific gene networks: application to murine retinal functional studies.
Q33632265	Computational analysis of whole-genome differential allelic expression data in human
Q37852524	Computational approaches to 3D modeling of RNA.
Q28082457	Computational approaches towards understanding human long non-coding RNA biology
Q26852710	Computational biology of RNA interactions
Q28750481	Computational challenges in the analysis of ancient DNA
Q45886254	Computational discovery of human coding and non-coding transcripts with conserved splice sites.
Q36844885	Computational discovery of transcription factors associated with drug response
Q34715061	Computational epigenetics
Q48257294	Computational evidence for functionality of noncoding mouse transcripts
Q30885763	Computational identification of epigenetically regulated lncRNAs and their associated genes based on integrating genomic data
Q36144746	Computational inference of mRNA stability from histone modification and transcriptome profiles
Q38367824	Computational methodology for ChIP-seq analysis
Q42101967	Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish.
Q34427568	Computational prediction of polycomb-associated long non-coding RNAs
Q28256647	Computer-aided drug design: the next 20 years
Q37628326	Computing the probability of RNA hairpin and multiloop formation
Q33334373	Concordant gene expression in leukemia cells and normal leukocytes is associated with germline cis-SNPs
Q36752464	Congenital disease SNPs target lineage specific structural elements in protein kinases
Q30855812	Conservation and implications of eukaryote transcriptional regulatory regions across multiple species
Q33524650	Conservation and regulatory associations of a wide affinity range of mouse transcription factor binding sites
Q37209981	Conservation of core gene expression in vertebrate tissues
Q33730914	Conservation of human microsatellites across 450 million years of evolution
Q28596350	Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle
Q34378106	Conserved cis-regulatory regions in a large genomic landscape control SHH and BMP-regulated Gremlin1 expression in mouse limb buds
Q36509106	Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes
Q37247048	Conserved introns reveal novel transcripts in Drosophila melanogaster
Q56527574	Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci
Q33575514	Consistent annotation of gene expression arrays
Q35563959	Constraint and divergence of global gene expression in the mammalian embryo
Q35660195	Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity
Q90196898	Construction and Analysis of a Long Non-Coding RNA (lncRNA)-Associated ceRNA Network in β-Thalassemia and Hereditary Persistence of Fetal Hemoglobin
Q34085568	Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data
Q37636634	Construction and analysis of dysregulated lncRNA-associated ceRNA network identified novel lncRNA biomarkers for early diagnosis of human pancreatic cancer
Q42735407	Construction of gene/transcription regulatory networks
Q64064477	Construction of lncRNA-mediated ceRNA network to reveal clinically relevant lncRNA biomarkers in glioblastomas
Q30652200	Contrasting expression patterns of coding and noncoding parts of the human genome upon oxidative stress.
Q39680518	Contrasting signals of positive selection in genes involved in human skin-color variation from tests based on SNP scans and resequencing
Q61124603	Contribution of rare and common variants to intellectual disability in a sub-isolate of Northern Finland
Q91844209	Contributions of Gene Modules Regulated by Essential Noncoding RNA in Colon Adenocarcinoma Progression
Q36096797	Control of Chromatin Structure by Long Noncoding RNA.
Q37163479	Control of IL-4 expression in T helper 1 and 2 cells.
Q37866372	Control of nuclear receptor function by local chromatin structure.
Q26781275	Controlling HIV-1: Non-Coding RNA Gene Therapy Approaches to a Functional Cure
Q49340216	Conventional and pioneer modes of glucocorticoid receptor interaction with enhancer chromatin in vivo.
Q90307943	Coordinate regulation of ELF5 and EHF at the chr11p13 CF modifier region
Q39455041	Copy number variation at 6q13 functions as a long-range regulator and is associated with pancreatic cancer risk
Q34328787	Copy number variation upstream of PMP22 in Charcot-Marie-Tooth disease
Q28652392	Core and region-enriched networks of behaviorally regulated genes and the singing genome
Q33561283	Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns
Q28972453	Correlation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 Cells
Q34483455	Correlation of long non-coding RNA expression with metastasis, drug resistance and clinical outcome in cancer.
Q33580167	Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly
Q42381392	Covalent Modifications of Histone H3K9 Promote Binding of CHD3.
Q28315762	CpG islands and the regulation of transcription
Q51051010	Cracking the ENCODE: from transcription to therapeutics.
Q56987479	Critical evaluation of the FANTOM3 non-coding RNA transcripts
Q35612915	Cross-population joint analysis of eQTLs: fine mapping and functional annotation
Q90332039	Crosstalk of mRNA, miRNA, lncRNA, and circRNA and Their Regulatory Pattern in Pulmonary Fibrosis
Q58049785	Current Advances in Noncoding RNA Relevant to Epigenetic Mechanisms
Q30887489	DASMiner: discovering and integrating data from DAS sources
Q33494114	DATE analysis: A general theory of biological change applied to microarray data
Q39775538	DBTSS provides a tissue specific dynamic view of Transcription Start Sites
Q24619908	DBTSS: DataBase of Transcriptional Start Sites progress report in 2012
Q43032565	DBTSS: database of transcription start sites, progress report 2008.
Q35668888	DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications
Q34530091	DFI: gene feature discovery in RNA-seq experiments from multiple sources
Q42290943	DMAK: A curated pan-cancer DNA methylation annotation knowledgebase
Q93197734	DNA Methylation Inhibits the Expression of CFSH in Mud Crab
Q37012443	DNA damage, DNA repair, ageing and age-related disease
Q26999369	DNA dynamics and single-molecule biology
Q34223098	DNA fragments binding CTCF in vitro and in vivo are capable of blocking enhancer activity.
Q84005747	DNA free energy-based promoter prediction and comparative analysis of Arabidopsis and rice genomes
Q36961726	DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
Q36622511	DNA methylation and its implications and accessibility for neuropsychiatric therapeutics.
Q36811567	DNA methylation and transcriptional noise
Q33952447	DNA methylation changes in atypical adenomatous hyperplasia, adenocarcinoma in situ, and lung adenocarcinoma.
Q35754822	DNA methylation of IGF2, GNASAS, INSIGF and LEP and being born small for gestational age.
Q21184030	DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
Q34096524	DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas.
Q51360345	DNA methylation profiling of pediatric B-cell lymphoblastic leukemia with KMT2A rearrangement identifies hypomethylation at enhancer sites.
Q31133498	DNA methylation profiling of the fibrinogen gene landscape in human cells and during mouse and zebrafish development
Q37921080	DNA methylation-associated silencing of tumor-suppressor microRNAs in cancer
Q33453979	DNA methylation-histone modification relationships across the desmin locus in human primary cells.
Q28480986	DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis
Q33407748	DNA motif alignment by evolving a population of Markov chains
Q37212976	DNA replication origins-where do we begin?
Q42950586	DNA replication timing is deterministic at the level of chromosomal domains but stochastic at the level of replicons in Xenopus egg extracts.
Q35038701	DNA shape, genetic codes, and evolution
Q35875028	DNA-Binding Motif of the Imprinted Transcription Factor PEG3.
Q42818364	DNA-binding factors shape the mouse methylome at distal regulatory regions
Q37696323	DNA-centered approaches to characterize regulatory protein-DNA interaction complexes
Q40613576	DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements
Q24633746	DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells
Q30557846	DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data
Q42535809	Dark Matter RNA: Existence, Function, and Controversy
Q33358608	Dark matter RNA illuminates the puzzle of genome-wide association studies
Q37425001	Darwin and genetics
Q30884322	Data interpretation: deciphering the biological function of Type 2 diabetes associated risk loci
Q58062131	De longs ARN non codants activateurs de la transcription des gènes
Q37207895	De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements.
Q41554907	De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance
Q21145759	De novo genesis of enhancers in vertebrates
Q33550659	De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis.
Q22065248	De novo origins of human genes
Q38269075	De-repressing LncRNA-Targeted Genes to Upregulate Gene Expression: Focus on Small Molecule Therapeutics
Q55668859	Deciphering Non-coding RNAs in Cardiovascular Health and Disease.
Q37385352	Deciphering diatom biochemical pathways via whole-cell proteomics.
Q36668743	Deciphering the transcriptional regulation of microRNA genes in humans with ACTLocater.
Q92684397	Decision tree-based classifiers for lung cancer diagnosis and subtyping using TCGA miRNA expression data
Q38960929	Decoding sORF translation - from small proteins to gene regulation
Q36201188	Decoding the human genome
Q92441975	Decreased H19, GAS5, and linc0597 Expression and Association Analysis of Related Gene Polymorphisms in Rheumatoid Arthritis
Q35298358	Decreased T-cell receptor signaling through CARD11 differentially compromises forkhead box protein 3-positive regulatory versus T(H)2 effector cells to cause allergy
Q47784394	Decreased expression of lncRNA VPS9D1-AS1 in gastric cancer and its clinical significance
Q36520223	Decreased expression of long non-coding RNA GAS5 indicates a poor prognosis and promotes cell proliferation and invasion in hepatocellular carcinoma by regulating vimentin
Q33618023	Decreased expression of long noncoding RNA GAS5 indicates a poor prognosis and promotes cell proliferation in gastric cancer
Q37598887	Decreased expression of pseudogene PTENP1 promotes malignant behaviours and is associated with the poor survival of patients with HNSCC.
Q31106241	Deep sequencing and expression of microRNAs from early honeybee (Apis mellifera) embryos reveals a role in regulating early embryonic patterning
Q33544031	Deep sequencing of coding and non-coding RNA in the CNS
Q44226581	Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
Q39449912	Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells
Q42124559	Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention
Q39960732	Defining a chromatin pattern that characterizes DNA-hypermethylated genes in colon cancer cells
Q22066251	Defining functional DNA elements in the human genome
Q42707531	Defining the pathogenicity of DNA sequence variation
Q34780596	Defining the replication program through the chromatin landscape
Q34476804	Defining the transcriptome and proteome in three functionally different human cell lines
Q34175243	Deletion of the betaine-GABA transporter (BGT1; slc6a12) gene does not affect seizure thresholds of adult mice
Q38396682	Demystifying computer science for molecular ecologists
Q38085071	Deregulation of glycolysis in cancer: glyceraldehyde-3-phosphate dehydrogenase as a therapeutic target
Q38848335	Deregulation of the non-coding genome in leukemia
Q42815091	Derivation of an endogenous small RNA from double-stranded Sox4 sense and natural antisense transcripts in the mouse brain
Q38372679	Designing optogenetically controlled RNA for regulating biological systems
Q39094259	Destabilization of B2 RNA by EZH2 Activates the Stress Response.
Q37139041	Detecting and comparing non-coding RNAs in the high-throughput era
Q47179702	Detecting differential copy number variation between groups of samples.
Q35044206	Detecting rare and common variants for complex traits: sibpair and odds ratio weighted sum statistics (SPWSS, ORWSS).
Q41863513	Detection and characterization of regulatory elements using probabilistic conditional random field and hidden Markov models
Q36804854	Detection and characterization of silencers and enhancer-blockers in the greater CFTR locus
Q38113565	Detection and impact of rare regulatory variants in human disease
Q35840738	Detection of DNA structural motifs in functional genomic elements.
Q31127104	Detection of RNA structures in porcine EST data and related mammals.
Q46729724	Detection of RNA-Protein Interactions Using Tethered RNA Affinity Capture.
Q39219357	Detection of a common chimeric transcript between human chromosomes 7 and 16.
Q30080028	Detection of nonneutral substitution rates on mammalian phylogenies
Q33938584	Determinants of antigenicity and specificity in immune response for protein sequences
Q30365867	Determination and validation of principal gene products.
Q24644698	Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model
Q34244371	Determination of the obesity-associated gene variants within the entire FTO gene by ultra-deep targeted sequencing in obese and lean children
Q38207502	Determining causality and consequence of expression quantitative trait loci
Q33480086	Determining spatial chromatin organization of large genomic regions using 5C technology
Q39319196	Development of a RNA-Seq Based Prognostic Signature in Lung Adenocarcinoma.
Q35806876	Development of an Ontology for Periodontitis
Q58782209	Developmental Dynamics of Long Noncoding RNA Expression during Sexual Fruiting Body Formation in Fusarium graminearum
Q33928452	Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex
Q37309445	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
Q27304405	De novo identification of replication-timing domains in the human genome by deep learning
Q92130384	Diabetic Retinopathy, lncRNAs, and Inflammation: A Dynamic, Interconnected Network
Q38113302	Dial M(RF) for myogenesis
Q35022449	Diatom proteomics reveals unique acclimation strategies to mitigate Fe limitation
Q35233181	Differences among brain tumor stem cell types and fetal neural stem cells in focal regions of histone modifications and DNA methylation, broad regions of modifications, and bivalent promoters
Q34993956	Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites
Q104471947	Different expression of lipid metabolism-related genes in Shandong black cattle and Luxi cattle based on transcriptome analysis
Q31130870	Differential analysis for high density tiling microarray data
Q34530302	Differential combinatorial regulatory network analysis related to venous metastasis of hepatocellular carcinoma
Q49731832	Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles.
Q33828397	Differential expression of non-coding RNAs and continuous evolution of the X chromosome in testicular transcriptome of two mouse species
Q37416999	Differential involvement of E2A-corepressor interactions in distinct leukemogenic pathways.
Q39202382	Differential roles for MBD2 and MBD3 at methylated CpG islands, active promoters and binding to exon sequences
Q21563495	Differentiating protein-coding and noncoding RNA: challenges and ambiguities
Q33700553	Differentiation of zebrafish melanophores depends on transcription factors AP2 alpha and AP2 epsilon
Q33730088	Dindel: accurate indel calls from short-read data
Q36142013	Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment
Q30692715	Discover context-specific combinatorial transcription factor interactions by integrating diverse ChIP-Seq data sets
Q33918760	Discover regulatory DNA elements using chromatin signatures and artificial neural network.
Q34007213	Discovering functional DNA elements using population genomic information: a proof of concept using human mtDNA.
Q34368356	Discovering homotypic binding events at high spatial resolution.
Q34146422	Discovering modulators of gene expression
Q82976748	Discovering sequences with potential regulatory characteristics
Q34074703	Discovering transcription factor regulatory targets using gene expression and binding data
Q29614411	Discovery and characterization of chromatin states for systematic annotation of the human genome
Q28276197	Discovery and characterization of human exonic transcriptional regulatory elements
Q35120737	Discovery of SMAD4 promoters, transcription factor binding sites and deletions in juvenile polyposis patients
Q34712340	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
Q30884245	Discovery of regulatory elements is improved by a discriminatory approach
Q108126987	Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Q35581580	Discriminative prediction of mammalian enhancers from DNA sequence.
Q33845004	Disease and phenotype data at Ensembl.
Q33471397	Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening
Q28593252	Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype
Q37822860	Disruption of long-distance highly conserved noncoding elements in neurocristopathies
Q35907602	Dissecting the regulatory architecture of gene expression QTLs
Q34026313	Dissecting the transcriptional regulatory properties of human chromosome 16 highly conserved non-coding regions
Q35668917	Distal interleukin-1β (IL-1β) response element of human matrix metalloproteinase-13 (MMP-13) binds activator protein 1 (AP-1) transcription factors and regulates gene expression
Q35146035	Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species
Q34483545	Distinct Transcriptional Programs Underlie Sox9 Regulation of the Mammalian Chondrocyte
Q33842527	Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.
Q38905792	Distinct lncRNA transcriptional fingerprints characterize progressive stages of multiple myeloma.
Q47835227	Distinct patterns of genetic variations in potential functional elements in long noncoding RNAs
Q24648990	Distinctive structures between chimpanzee and human in a brain noncoding RNA
Q24670087	Distinguishing protein-coding and noncoding genes in the human genome
Q53060381	Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes.
Q33893358	Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes
Q35074692	Divergent transcription is associated with promoters of transcriptional regulators
Q21092736	Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
Q36275980	Diversity and regulatory impact of copy number variation in the primate Macaca fascicularis
Q52696362	Diversity of genome research at the 2009 Plant and Animal Genome Conference.
Q37017111	Do non-genomically encoded fusion transcripts cause recurrent chromosomal translocations?
Q43228332	Do regulatory regions matter in FOXG1 duplications?
Q55059021	Does every transcript originate from a gene?
Q38839771	Double-negative feedback loop between long non-coding RNA TUG1 and miR-145 promotes epithelial to mesenchymal transition and radioresistance in human bladder cancer cells
Q36499296	Down regulated lncRNA MEG3 eliminates mycobacteria in macrophages via autophagy
Q34964947	Down syndrome--recent progress and future prospects
Q50099153	Down-regulation of LncRNA CCAT1 enhances radiosensitivity via regulating miR-148b in breast cancer.
Q35557768	Downregulated Long Noncoding RNA BANCR Promotes the Proliferation of Colorectal Cancer Cells via Downregualtion of p21 Expression
Q45903254	Downregulated long noncoding RNA MEG3 is associated with poor prognosis and promotes cell proliferation in gastric cancer.
Q52576028	Downregulation of BANCR Promotes Aggressiveness in Papillary Thyroid Cancer via the MAPK and PI3K Pathways.
Q38910285	Downregulation of TPTE2P1 Inhibits Migration and Invasion of Gallbladder Cancer Cells
Q38813218	Downregulation of lncRNA-MALAT1 Affects Proliferation and the Expression of Stemness Markers in Glioma Stem Cell Line SHG139S.
Q35167874	Drosophila 3' UTRs are more complex than protein-coding sequences
Q36287888	Drosophila Genomes by the Baker's Dozen. Preface
Q34764038	Drosophila functional elements are embedded in structurally constrained sequences
Q21134949	Dual function of histone H3 lysine 36 methyltransferase ASH1 in regulation of Hox gene expression
Q40508997	Dunning rat prostate adenocarcinomas and alternative splicing reporters: powerful tools to study epithelial plasticity in prostate tumors in vivo
Q48071852	Duplicated RNA genes in teleost fish genomes
Q36660155	Dynamic DNA methylation across diverse human cell lines and tissues
Q35968838	Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity.
Q28660919	Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish
Q34779368	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
Q35561152	Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
Q36881872	Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping
Q49844069	Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells.
Q35451782	Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
Q92534851	Dysregulated Long Non-coding RNAs in Parkinson's Disease Contribute to the Apoptosis of Human Neuroblastoma Cells
Q42654709	Dysregulated long noncoding RNAs (lncRNAs) in hepatocellular carcinoma: implications for tumorigenesis, disease progression, and liver cancer stem cells
Q25267502	Dysregulation of Long Non-coding RNA (lncRNA) Genes and Predicted lncRNA-protein Interactions during Zika Virus Infection
Q34270499	ELK1 uses different DNA binding modes to regulate functionally distinct classes of target genes
Q80540711	ENCODE and our very busy genome
Q31015496	ENCODE data at the ENCODE portal
Q33832050	ENCODE tiling array analysis identifies differentially expressed annotated and novel 5' capped RNAs in hepatitis C infected liver
Q33516102	ENCODE whole-genome data in the UCSC Genome Browser
Q34072582	ENCODE whole-genome data in the UCSC Genome Browser: update 2012.
Q24616384	ENCODE whole-genome data in the UCSC genome browser (2011 update)
Q36778458	ENCODE: A Sourcebook of Epigenomes and Chromatin Language
Q55056659	ENCODE: The human encyclopaedia.
Q35532215	EPMA position paper in cancer: current overview and future perspectives
Q45734757	EPMDA: an expression-profile based computational model for microRNA-disease association prediction
Q24564150	EXTREME: an online EM algorithm for motif discovery
Q93350235	Early transcriptome changes in response to chemical long-term potentiation induced via activation of synaptic NMDA receptors in mouse hippocampal neurons
Q36901968	Ectopic expression of Zmiz1 induces cutaneous squamous cell malignancies in a mouse model of cancer
Q40178869	Effect of Human Genetic Variability on Gene Expression in Dorsal Root Ganglia and Association with Pain Phenotypes.
Q38113502	Effect of atmospheric gas plasmas on cancer cell signaling.
Q38335029	Effects of deranged metabolism on epigenetic changes in cancer
Q34708614	Effects of gene regulatory reprogramming on gene expression in human and mouse developing hearts
Q99551763	Effects of lncRNA TUSC7 on the malignant biological behavior of osteosarcoma cells via regulation of miR-375
Q36544920	Effects of rare and common blood pressure gene variants on essential hypertension: results from the Family Blood Pressure Program, CLUE, and Atherosclerosis Risk in Communities studies
Q38770981	Effects of the functional HOTAIR rs920778 and rs12826786 genetic variants in glioma susceptibility and patient prognosis.
Q37463331	Effects of variations in the APOA1/C3/A4/A5 gene cluster on different parameters of postprandial lipid metabolism in healthy young men.
Q36161969	Effects on promoter activity of common SNPs in 5' region of GABRB3 exon 1A.
Q27486436	Efficient Algorithms for Probing the RNA Mutation Landscape
Q30432606	Efficient detection of RNA-protein interactions using tethered RNAs
Q51533507	Efficient genomewide selection of PCA-correlated tSNPs for genotype imputation.
Q33337384	Efficient targeted transcript discovery via array-based normalization of RACE libraries
Q33775580	Efficient utilization of rare variants for detection of disease-related genomic regions
Q37216430	Efficiently identifying significant associations in genome-wide association studies
Q28748758	Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates
Q28728136	Elephant transcriptome provides insights into the evolution of eutherian placentation
Q58708051	Elevated H3K79 homocysteinylation causes abnormal gene expression during neural development and subsequent neural tube defects
Q37763940	Elucidating gene regulatory mechanisms for sperm function through the integration of classical and systems approaches in C. elegans
Q36205577	Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D
Q64956800	Emerging Roles of p53 Related lncRNAs in Cancer Progression: A Systematic Review.
Q36989921	Emerging drugs for biliary cancer
Q27002577	Emerging epigenetic mechanisms of long non-coding RNAs
Q92965197	Emerging epigenomic landscapes of pancreatic cancer in the era of precision medicine
Q38186979	Emerging evidence for functional peptides encoded by short open reading frames
Q34178419	Emerging paradigms of long non-coding RNAs in gastrointestinal cancer
Q89530752	Emerging role of tumor-related functional peptides encoded by lncRNA and circRNA
Q47974502	Emerging roles of hnRNPA1 in modulating malignant transformation
Q64254808	Emerging roles of lncRNAs in the post-transcriptional regulation in cancer
Q28080795	Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis
Q34289150	Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease
Q26774498	Emerging roles of non-coding RNAs in gastric cancer: Pathogenesis and clinical implications
Q35996566	Empirical estimation of sequencing error rates using smoothing splines
Q33548726	Empirical evaluation of oligonucleotide probe selection for DNA microarrays
Q55008894	Encoding activities of non-coding RNAs.
Q59090946	Encyclopaedia of humble DNA
Q37571599	Endogenous RNA interference is driven by copy number
Q45872960	Endogenous microRNA can be broadly exploited to regulate transgene expression according to tissue, lineage and differentiation state
Q37192871	Endoglin expression in blood and endothelium is differentially regulated by modular assembly of the Ets/Gata hemangioblast code
Q37287350	Endonuclease-sensitive regions of human spermatozoal chromatin are highly enriched in promoter and CTCF binding sequences
Q51094405	Endothelial long non-coding RNAs regulated by oxidized LDL.
Q35018720	Enhanced expression of long non-coding RNA HOTAIR is associated with the development of gastric cancer
Q38860475	Enhanced methods to detect haplotypic effects on gene expression
Q34025898	Enhancer function: new insights into the regulation of tissue-specific gene expression
Q27310315	Enhancer scanning to locate regulatory regions in genomic loci
Q34624842	Enhancer variants: evaluating functions in common disease
Q37692126	Enhancers
Q91495371	Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease
Q34266848	Enhancers as information integration hubs in development: lessons from genomics.
Q35224403	Enhancers in embryonic stem cells are enriched for transposable elements and genetic variations associated with cancers
Q35468516	Enhancers regulate progression of development in mammalian cells
Q34696647	Enhancers: the abundance and function of regulatory sequences beyond promoters
Q34683257	Enrichment of mRNA-like noncoding RNAs in the divergence of Drosophila males.
Q29614532	Ensembl 2009
Q24614810	Ensembl 2011
Q38846322	Environmental Health and Long Non-coding RNAs
Q37587846	Environmental influences on epigenetic profiles.
Q41430723	EpiExplorer: live exploration and global analysis of large epigenomic datasets
Q57790961	Epigenetic Alterations in Bladder Cancer
Q37250663	Epigenetic Control of MicroRNA Expression and Aging
Q37727992	Epigenetic Landscape during Coronavirus Infection
Q55260556	Epigenetic Modifications Associated to Neuroinflammation and Neuropathic Pain After Neural Trauma.
Q24625376	Epigenetic alterations in aging
Q37378681	Epigenetic and transcriptional features of the novel human imprinted lncRNA GPR1AS suggest it is a functional ortholog to mouse Zdbf2linc
Q34460981	Epigenetic control of aging
Q38213062	Epigenetic dysregulation in glioma.
Q34210736	Epigenetic features are significantly associated with alternative splicing
Q26740004	Epigenetic memory: A macrophage perspective
Q34911097	Epigenetic modifications are associated with inter-species gene expression variation in primates
Q50086224	Epigenetic modifications of gene expression by lifestyle and environment.
Q24657549	Epigenetic principles and mechanisms underlying nervous system functions in health and disease
Q33727060	Epigenetic regulation by long noncoding RNAs in plants
Q33723664	Epigenetic regulation of EBV persistence and oncogenesis
Q38708405	Epigenetic regulation of early neural fate commitment
Q30505676	Epigenetic regulation of human cis-natural antisense transcripts
Q35110491	Epigenetic regulation of matrix metalloproteinases and their collagen substrates in cancer
Q90185475	Epigenetic regulation of oligodendrocyte differentiation: From development to demyelinating disorders
Q26998380	Epigenetic regulation of persistent pain
Q34089717	Epigenetic regulatory mechanisms associated with infertility
Q27014190	Epigenetic setting and reprogramming for neural cell fate determination and differentiation
Q26753019	Epigenetic silencing of tumor suppressor genes: Paradigms, puzzles, and potential
Q24630926	Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
Q26740029	Epigenetics and aging
Q38153255	Epigenetics components of aging in the central nervous system.
Q28076986	Epigenetics in Schistosomes: What We Know and What We Need Know
Q43079995	Epigenetics of human T cells during the G0-->G1 transition.
Q27024835	Epigenetics, chromatin and genome organization: recent advances from the ENCODE project
Q37384283	Epigenetics: heterochromatin meets RNAi.
Q37824255	Epigenomics in cancer management
Q35557622	Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.
Q22122008	Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems
Q34764207	Epithelial cell differentiation regulated by MicroRNA-200a in mammary glands.
Q38730271	Epo reprograms the epigenome of erythroid cells
Q33826275	Error and error mitigation in low-coverage genome assemblies
Q33615286	Error, reproducibility and sensitivity: a pipeline for data processing of Agilent oligonucleotide expression arrays
Q28263560	Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
Q37615737	Establishing legitimacy and function in the new transcriptome
Q37606899	Establishment of active chromatin structure at enhancer elements by mixed-lineage leukemia 1 to initiate estrogen-dependent gene expression
Q33618555	Estimating enrichment of repetitive elements from high-throughput sequence data
Q28713966	Estimation of sequencing error rates in short reads
Q29614917	Estimation of the multiple testing burden for genomewide association studies of nearly all common variants
Q37250659	Estrogen Regulation of MicroRNA Expression
Q38808336	Estrogen receptor alpha (ESR1)-signaling regulates the expression of the taxane-response biomarker PRP4K.
Q57232452	Eukaryotic core promoters and the functional basis of transcription initiation
Q38365224	Eukaryotic enhancers: common features, regulation, and participation in diseases
Q34590894	Eukaryotic transcription factor binding sites--modeling and integrative search methods
Q33997032	Evaluating experimental bias and completeness in comparative phosphoproteomics analysis.
Q47137449	Evaluation of Sox2 binding affinities for distinct DNA patterns using steered molecular dynamics simulation
Q51836646	Evaluation of conserved and ultra-conserved non-genic sequences in chromosome 15q15-linked periodic catatonia.
Q30494853	Evaluation of the 8q24 prostate cancer risk locus and MYC expression.
Q51798863	Evidence for an intronic cis-regulatory element within CD69 gene.
Q34362921	Evidence for sequence biases associated with patterns of histone methylation
Q34119004	Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome
Q21560900	Evidence for transcript networks composed of chimeric RNAs in human cells
Q42740315	Evidence of abundant purifying selection in humans for recently acquired regulatory functions
Q33654639	Evidence that localized variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair.
Q37342144	Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation
Q38346449	Evidence-ranked motif identification
Q52316984	Evolution of DNAaseI Hypersensitive Sites in MHC Regulatory Regions of Primates.
Q38364008	Evolution of a domain conserved in microtubule-associated proteins of eukaryotes
Q37957677	Evolution of microRNA diversity and regulation in animals
Q28752287	Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana
Q41762368	Evolution of the let-7 microRNA family
Q41955907	Evolution of the mammalian transcription factor binding repertoire via transposable elements
Q35750653	Evolution of the unspliced transcriptome
Q37149799	Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites
Q56271768	Evolutionary Genomics of microRNAs and Their Relatives
Q38902856	Evolutionary clues in lncRNAs
Q36304212	Evolutionary conservation and functional roles of ncRNA.
Q33736558	Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
Q38609365	Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
Q52685322	Evolutionary genomics: come fly with us.
Q28754792	Evolutionary insights into the unique electromotility motor of mammalian outer hair cells.
Q33491547	Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence
Q37318397	Evolutionary transients in the rice transcriptome
Q58650569	Evolvability and Speed of Evolutionary Algorithms in Light of Recent Developments in Biology
Q28704585	Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong?
Q30537344	Exome RNA sequencing reveals rare and novel alternative transcripts
Q33810009	Exome localization of complex disease association signals.
Q24300588	Exome sequence identifies RIPK4 as the Bartsocas-Papas syndrome locus
Q36532209	Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications
Q24634097	Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons
Q92643883	Exosome-delivered and Y RNA-derived small RNA suppresses influenza virus replication
Q98164605	Expanded ENCODE delivers invaluable genomic encyclopedia
Q98164640	Expanded encyclopaedias of DNA elements in the human and mouse genomes
Q64921256	Expanding Alternative Splicing Identification by Integrating Multiple Sources of Transcription Data in Tomato.
Q89682233	Expanding Role of Ubiquitin in Translational Control
Q38108276	Expanding the foundation for personalized medicine: implications and challenges for dentistry.
Q33395205	Expansion of the human mu-opioid receptor gene architecture: novel functional variants
Q37585868	Expansive marker analysis replicating the association of glaucoma susceptibility with human chromosome loci 1q43 and 10p12.31.
Q43613051	Experimental design criteria in phylogenetics: where to add taxa
Q34510016	Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection
Q35861396	Exploiting Drosophila genetics to understand microRNA function and regulation
Q37724407	Exploiting Long Noncoding RNAs as Pharmacological Targets to Modulate Epigenetic Diseases
Q33946185	Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes
Q21284311	Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites
Q36102884	Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival
Q33316825	Exploration of small RNAs
Q36909786	Exploring mRNA 3'-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening
Q26991710	Exploring the effects of polymorphisms on cis-regulatory signal transduction response
Q47204725	Exploring the relationship between intron retention and chromatin accessibility in plants
Q28757247	Expressed sequence tags as a tool for phylogenetic analysis of placental mammal evolution
Q42082419	Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray.
Q37326719	Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations
Q34230381	Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer
Q44569827	Expression of LINC00312, a long intergenic non-coding RNA, is negatively correlated with tumor size but positively correlated with lymph node metastasis in nasopharyngeal carcinoma
Q21136091	Expression of conjoined genes: another mechanism for gene regulation in eukaryotes
Q30275293	Expression of lncRNAs in Low-Grade Gliomas and Glioblastoma Multiforme: An In Silico Analysis
Q37264950	Expression of polycomb targets predicts breast cancer prognosis
Q33355821	Expression patterns of transcribed human endogenous retrovirus HERV-K(HML-2) loci in human tissues and the need for a HERV Transcriptome Project
Q47343750	Expression profile analysis of long noncoding RNA in Acute Myeloid Leukemia by microarray and bioinformatics.
Q36546434	Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers
Q43451695	Expression profiles analysis of long non-coding RNAs identified novel lncRNA biomarkers with predictive value in outcome of cutaneous melanoma
Q42366627	Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2
Q33857692	Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma
Q33826197	Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline
Q35007965	Extensive chromatin remodelling and establishment of transcription factor 'hotspots' during early adipogenesis.
Q34325564	Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection
Q36056550	Extensive identification and analysis of conserved small ORFs in animals
Q42209149	Extreme HOT regions are CpG-dense promoters in C. elegans and humans
Q28235519	FAS haploinsufficiency is a common disease mechanism in the human autoimmune lymphoproliferative syndrome
Q37323340	FGFR2 variants and breast cancer risk: fine-scale mapping using African American studies and analysis of chromatin conformation
Q41926547	FOXA1 positively regulates gene expression by changing gene methylation status in human breast cancer MCF-7 cells
Q35107944	False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions
Q56350284	Familial Cancer Variant Prioritization Pipeline version 2 (FCVPPv2) applied to a papillary thyroid cancer family
Q39465541	Fast and Accurate Approximation to Significance Tests in Genome-Wide Association Studies
Q33883121	Fast evolution of core promoters in primate genomes
Q36306108	Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data
Q35003131	Faster than neutral evolution of constrained sequences: the complex interplay of mutational biases and weak selection.
Q46567523	Feasibility of occurrence of different types of protonated base pairs in RNA: a quantum chemical study
Q59793196	Filtered reproductive long non-coding RNAs by genome-wide analyses of goat ovary at different estrus periods
Q33567158	Finding Occurrences of Relevant Functional Elements in Genomic Signatures
Q37919798	Finding aptamers and small ribozymes in unexpected places
Q33287630	Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data
Q37621072	Finding distal regulatory elements in the human genome
Q34325891	Finding the sources of missing heritability in a yeast cross
Q38252712	Fine mapping of type 2 diabetes susceptibility loci
Q36068167	Fine-Mapping of Common Genetic Variants Associated with Colorectal Tumor Risk Identified Potential Functional Variants
Q27486793	Firefly luciferase gene contains a cryptic promoter
Q92921156	FisherMP: fully parallel algorithm for detecting combinatorial motifs from large ChIP-seq datasets
Q37002930	Five endometrial cancer risk loci identified through genome-wide association analysis
Q64117305	Five-long non-coding RNA risk score system for the effective prediction of gastric cancer patient survival
Q22065896	Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
Q34313777	Folding and Finding RNA Secondary Structure
Q37666594	Formaldehyde-assisted isolation of regulatory elements
Q38423869	Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells
Q34048030	From General Aberrant Alternative Splicing in Cancers and Its Therapeutic Application to the Discovery of an Oncogenic DMTF1 Isoform.
Q36890252	From Loci to Biology: Functional Genomics of Genome-Wide Association for Coronary Disease
Q35839889	From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach
Q34471294	From cells to chromatin: capturing snapshots of genome organization with 5C technology
Q35024083	From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease
Q83567368	From expression QTLs to personalized transcriptomics
Q38216628	From gene action to reactive genomes
Q24550752	From genetic privacy to open consent
Q88911128	From genome-wide associations to candidate causal variants by statistical fine-mapping
Q60670847	From human genetics and genomics to pharmacogenetics and pharmacogenomics: past lessons, future directions
Q38732993	From junk to master regulators of invasion: lncRNA functions in migration, EMT and metastasis
Q50803643	From molecules to behavior: lessons from the study of rare genetic disorders.
Q35086314	From sequence to functional understanding: the difficult road ahead
Q33987387	From structure prediction to genomic screens for novel non-coding RNAs
Q27002416	From trans to cis: transcriptional regulatory networks in neocortical development
Q37478718	From transcription start site to cell biology
Q38148962	Function of lncRNAs and approaches to lncRNA-protein interactions
Q36378033	Functional analysis of transcription factor binding sites in human promoters
Q37091409	Functional and mechanistic diversity of distal transcription enhancers
Q34757927	Functional annotation of risk loci identified through genome-wide association studies for prostate cancer
Q33701048	Functional annotation signatures of disease susceptibility loci improve SNP association analysis
Q24623917	Functional cis-regulatory genomics for systems biology
Q34850013	Functional coding variants in SLC6A15, a possible risk gene for major depression.
Q34186561	Functional consequences of bidirectional promoters
Q36643264	Functional constraint and small insertions and deletions in the ENCODE regions of the human genome
Q41563633	Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level
Q37279616	Functional enhancers at the gene-poor 8q24 cancer-linked locus.
Q34073498	Functional genomics and rheumatoid arthritis: where have we been and where should we go?
Q38162737	Functional insights into the role of nuclear-retained long noncoding RNAs in gene expression control in mammalian cells
Q34175339	Functional interactions among microRNAs and long noncoding RNAs
Q34522035	Functional repeat-derived RNAs often originate from retrotransposon-propagated ncRNAs
Q38893504	Functional role and mechanism of lncRNA LOC728228 in malignant 16HBE cells transformed by anti-benzopyrene-trans-7,8-dihydrodiol-9,10-epoxide.
Q34012056	Functional transcriptome analysis of the postnatal brain of the Ts1Cje mouse model for Down syndrome reveals global disruption of interferon-related molecular networks
Q37357992	Functional transcriptomics in the post-ENCODE era
Q35614092	Functional validation of a constitutive autonomous silencer element
Q91578351	Functions and mechanism of noncoding RNA in the somatic cells of the testis
Q90403778	Functions and properties of nuclear lncRNAs-from systematically mapping the interactomes of lncRNAs
Q37942074	Functions of noncoding RNAs in neural development and neurological diseases
Q28757561	Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)
Q33905061	FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution
Q27499410	FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data
Q33566263	G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration
Q96131681	GATA2 Regulates Constitutive PD-L1 and PD-L2 Expression in Brain Tumors
Q57793781	GENCODE reference annotation for the human and mouse genomes
Q24608743	GENCODE: the reference human genome annotation for The ENCODE Project
Q21030477	GIFtS: annotation landscape analysis with GeneCards
Q35254377	GRASP v2.0: an update on the Genome-Wide Repository of Associations between SNPs and phenotypes
Q29614846	GREAT improves functional interpretation of cis-regulatory regions
Q33839291	GRM4 gene polymorphism is associated with susceptibility and prognosis of osteosarcoma in a Chinese Han population
Q24337095	GSTCD and INTS12 regulation and expression in the human lung
Q44853264	GWAS or Gee Whiz, PSAS or Pshaw: elucidating the biologic and clinical significance of genetic variation in cardiovascular disease.
Q35751562	Gammaretroviral vector integration occurs overwhelmingly within and near DNase hypersensitive sites
Q36459361	Gene and genon concept: coding versus regulation. A conceptual and information-theoretic analysis of genetic storage and expression in the light of modern molecular biology
Q28471960	Gene characterization index: assessing the depth of gene annotation
Q29014419	Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery
Q37329043	Gene expression in the mouse eye: an online resource for genetics using 103 strains of mice.
Q31161824	Gene expression microarray data analysis demystified
Q39911508	Gene expression profile of mesenchymal stem cells from paired umbilical cord units: cord is different from blood
Q28483663	Gene expression profiling of liver cancer stem cells by RNA-sequencing
Q54093966	Gene microarray analysis of lncRNA and mRNA expression profiles in patients with high‑grade ovarian serous cancer.
Q88691998	Gene regulation in the 3D genome
Q37245775	Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies
Q30580981	Gene, region and pathway level analyses in whole-genome studies
Q91709884	Gene-based analysis in HRC imputed genome wide association data identifies three novel genes for Alzheimer's disease
Q34987284	Gene-centered regulatory networks.
Q34040395	Gene-pair expression signatures reveal lineage control
Q37800025	Generating and navigating proteome maps using mass spectrometry.
Q34547209	Generation of a neuro-specific microarray reveals novel differentially expressed noncoding RNAs in mouse models for neurodegenerative diseases
Q33338999	Generation of a non-small cell lung cancer transcriptome microarray
Q57473921	Generation of an equine biobank to be used for Functional Annotation of Animal Genomes project
Q124053662	Genes, Genomes, and Genomics
Q37761136	Genes, mutations, and human inherited disease at the dawn of the age of personalized genomics
Q41842884	Genetic adaptation of fatty-acid metabolism: a human-specific haplotype increasing the biosynthesis of long-chain omega-3 and omega-6 fatty acids
Q38043387	Genetic and epigenetic contribution to complex traits
Q36825572	Genetic architecture of quantitative traits in mice, flies, and humans
Q34213531	Genetic association analyses of nitric oxide synthase genes and neural tube defects vary by phenotype
Q37511422	Genetic associations with expression for genes implicated in GWAS studies for atherosclerotic cardiovascular disease and blood phenotypes
Q33993060	Genetic causes of high and low serum HDL-cholesterol
Q46285732	Genetic effects on gene expression across human tissues
Q27010354	Genetic identification of missing persons: DNA analysis of human remains and compromised samples
Q42365350	Genetic polymorphisms of non-coding RNAs associated with increased head and neck cancer susceptibility: a systematic review and meta-analysis
Q37963581	Genetic susceptibility to periodontitis
Q79768440	Genetic variability and neutral mutations: a commentary on 'Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles' by Motoo Kimura
Q36735686	Genetic variation and its role in malignancy
Q33835082	Genetic variation in Native Americans, inferred from Latino SNP and resequencing data
Q28476093	Genetic variation in the proximal promoter of ABC and SLC superfamilies: liver and kidney specific expression and promoter activity predict variation
Q28606617	Genetic variations in the serotonergic system contribute to amygdala volume in humans
Q40048374	Genetics and genome-wide association studies: surgery-guided algorithm and promise for future breast cancer personalized surgery
Q24289392	Genetics of cognition in epilepsy
Q34263565	Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles
Q26798895	Genetics of primary ovarian insufficiency: new developments and opportunities
Q33744854	Genetics of psychiatric disorders methods: molecular approaches
Q38610460	Genetics. It's the sequence, stupid!
Q52713285	Genetics. Revealing the dark matter of the genome.
Q59043845	Genome 'census' reveals hidden riches
Q36070266	Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus
Q33403093	Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22.
Q34657673	Genome and proteome annotation: organization, interpretation and integration
Q33737782	Genome annotation for clinical genomic diagnostics: strengths and weaknesses
Q39422331	Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
Q39911794	Genome areas with high gene density and CpG island neighborhood strongly attract porcine endogenous retrovirus for integration and favor the formation of hot spots.
Q54471750	Genome diagnostics: next-generation sequencing, new genome-wide association studies and clinical challenges.
Q58964928	Genome project turns up evolutionary surprises
Q27691812	Genome regulation by long noncoding RNAs.
Q92690760	Genome sequencing-the dawn of a game-changing era
Q34241160	Genome structure determination via 3C-based data integration by the Integrative Modeling Platform
Q49993926	Genome-Wide Analysis Identified a Number of Dysregulated Long Noncoding RNA (lncRNA) in Human Pancreatic Ductal Adenocarcinoma.
Q42039944	Genome-Wide Mapping of Chromatin State of Mouse Forelimbs
Q38293842	Genome-scale ChIP-chip analysis using 10,000 human cells
Q35037090	Genome-scale analysis of replication timing: from bench to bioinformatics.
Q30440067	Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.
Q35853981	Genome-scale techniques highlight the epigenome and redefine fundamental principles of gene regulation
Q28510627	Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo
Q34423997	Genome-wide DNA Methylation Profiles of Small Intestine and Liver in Fast-growing and Slow-growing Weaning Piglets
Q89514417	Genome-wide MNase hypersensitivity assay unveils distinct classes of open chromatin associated with H3K27me3 and DNA methylation in Arabidopsis thaliana
Q30578510	Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays
Q42225375	Genome-wide allele- and strand-specific expression profiling
Q35451716	Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells
Q54924453	Genome-wide analysis of DNA methylation in human amnion.
Q33315717	Genome-wide analysis of antisense transcription with Affymetrix exon array
Q39259290	Genome-wide analysis of human SNPs at long intergenic noncoding RNAs
Q89868653	Genome-wide analysis of lncRNAs, miRNAs, and mRNAs forming a prognostic scoring system in esophageal squamous cell carcinoma
Q35914857	Genome-wide analysis of long noncoding RNA stability
Q34548248	Genome-wide analysis of promoter architecture in Drosophila melanogaster.
Q35076980	Genome-wide analysis of the 5' and 3' ends of vaccinia virus early mRNAs delineates regulatory sequences of annotated and anomalous transcripts
Q24595121	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
Q36388817	Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription
Q34138007	Genome-wide approaches to schizophrenia
Q37077306	Genome-wide approaches to studying chromatin modifications
Q37736619	Genome-wide association analysis for chronic venous disease identifies EFEMP1 and KCNH8 as susceptibility loci
Q58699978	Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
Q24550632	Genome-wide association studies for complex traits: consensus, uncertainty and challenges
Q37292893	Genome-wide association studies: potential next steps on a genetic journey
Q36045367	Genome-wide association study identifies common genetic variants associated with salivary gland carcinoma and its subtypes
Q36128818	Genome-wide association study identifies new susceptibility loci for adolescent idiopathic scoliosis in Chinese girls
Q35030839	Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk
Q40277663	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis
Q48171906	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer
Q39582003	Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
Q37421075	Genome-wide colonization of gene regulatory elements by G4 DNA motifs
Q35036891	Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots
Q92905141	Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication
Q35493806	Genome-wide depletion of replication initiation events in highly transcribed regions
Q34901415	Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
Q36388833	Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum
Q34157214	Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines.
Q30561820	Genome-wide epigenetic data facilitate understanding of disease susceptibility association studies
Q21092426	Genome-wide gene-environment study identifies glutamate receptor gene GRIN2A as a Parkinson's disease modifier gene via interaction with coffee
Q36134892	Genome-wide identification and characterisation of HOT regions in the human genome.
Q92786457	Genome-wide identification and characterization of long non-coding RNAs involved in fruit ripening and the climacteric in Cucumis melo
Q41447130	Genome-wide identification and expression profiling of long non-coding RNAs in auditory and vestibular systems
Q51280940	Genome-wide identification of Sox8-, and Sox9-dependent genes during early post-natal testis development in the mouse.
Q33917897	Genome-wide identification of conserved regulatory function in diverged sequences
Q57156960	Genome-wide identification of enhancer elements in the placenta
Q35206403	Genome-wide identification of microRNA expression quantitative trait loci
Q21144967	Genome-wide interrogation of Mammalian stem cell fate determinants by nested chromosome deletions
Q34655867	Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing
Q28756629	Genome-wide nucleotide-level mammalian ancestor reconstruction
Q30838341	Genome-wide prediction of cancer driver genes based on SNP and cancer SNV data
Q30277994	Genome-wide predictors of NF-κB recruitment and transcriptional activity
Q35311763	Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA.
Q37142037	Genome-wide profiling of salt fractions maps physical properties of chromatin
Q53448791	Genome-wide profiling of untranslated regions by paired-end ditag sequencing reveals unexpected transcriptome complexity in yeast.
Q35951752	Genome-wide profiling to analyze the effects of Ox-LDL induced THP-1 macrophage-derived foam cells on gene expression
Q36995336	Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
Q36782224	Genome-wide reprogramming of the chromatin landscape underlies endocrine therapy resistance in breast cancer
Q36936588	Genome-wide significant locus of beta-trace protein, a novel kidney function biomarker, identified in European and African Americans
Q36948921	Genome-wide studies highlight indirect links between human replication origins and gene regulation.
Q64087570	Genome-wide target interactome profiling reveals a novel epigenetic pathway for oncogenic lncRNA in breast cancer
Q35208710	Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs
Q33611702	Genome-wide views of chromatin structure
Q35708487	GenomeRunner: automating genome exploration
Q28476779	Genomewide analyses define different modes of transcriptional regulation by peroxisome proliferator-activated receptor-β/δ (PPARβ/δ)
Q34606096	Genomewide association studies: history, rationale, and prospects for psychiatric disorders
Q57813944	Genomic and Phenomic Research in the 21st Century
Q33495562	Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
Q38670418	Genomic and transcriptomic heterogeneity of colorectal tumors arising in Lynch Syndrome
Q30853584	Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity
Q38019305	Genomic approaches towards finding cis-regulatory modules in animals
Q33530093	Genomic approaches uncover increasing complexities in the regulatory landscape at the human SCL (TAL1) locus
Q33382735	Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum
Q42745731	Genomic data integration for ecological and evolutionary traits in non-model organisms
Q37150865	Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns
Q39013223	Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to control of osteoblastogenesis.
Q21263186	Genomic organization of zebrafish microRNAs
Q35627595	Genomic perspectives of transcriptional regulation in forebrain development
Q33926822	Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells
Q28731577	Genomic regions associated with multiple sclerosis are active in B cells
Q24626537	Genomic screening with RNAi: results and challenges
Q30436435	Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection
Q36479375	Genomic variant annotation and prioritization with ANNOVAR and wANNOVAR.
Q22122210	Genomic views of distant-acting enhancers
Q36662069	Genomically humanized mice: technologies and promises
Q37093971	Genomics and the immune system
Q39892671	Genomics education training needs of U.S. health educators: a (qualitative) pilot study
Q38174765	Genomics of alternative splicing: evolution, development and pathophysiology
Q26991570	Genomics, personalized medicine, and pediatrics
Q34297992	Genomics: ENCODE explained
Q47681271	Genomics: protein fossils live on as RNA.
Q33738665	Genotype and tissue-specific effects on alternative splicing of the transcription factor 7-like 2 gene in humans
Q37260386	Genotype patterns that contribute to increased risk for or protection from developing heroin addiction
Q30487960	GermlncRNA: a unique catalogue of long non-coding RNAs and associated regulations in male germ cell development.
Q35694382	Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
Q30647183	Global Mapping of Transcription Factor Binding Sites by Sequencing Chromatin Surrogates: a Perspective on Experimental Design, Data Analysis, and Open Problems
Q41866271	Global analysis of phosphorylation networks in humans
Q35248894	Global analysis of transcription factor-binding sites in yeast using ChIP-Seq.
Q35228942	Global discovery and characterization of small non-coding RNAs in marine microalgae
Q37512104	Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation
Q37274368	Global discovery of primate-specific genes in the human genome
Q34518460	Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci
Q34058172	Global mapping of cell type-specific open chromatin by FAIRE-seq reveals the regulatory role of the NFI family in adipocyte differentiation
Q42367781	Global network random walk for predicting potential human lncRNA-disease associations
Q33374614	Global reorganization of replication domains during embryonic stem cell differentiation
Q57797080	Global transcriptional activity dynamics reveal functional enhancer RNAs
Q91666194	Glomerular expression pattern of long non-coding RNAs in the type 2 diabetes mellitus BTBR mouse model
Q84628712	Going small is the new big
Q24607140	GraphClust: alignment-free structural clustering of local RNA secondary structures
Q55236740	Gut Microbiota in Multiple Sclerosis and Experimental Autoimmune Encephalomyelitis: Current Applications and Future Perspectives.
Q24317641	H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
Q35422275	H3K4 tri-methylation provides an epigenetic signature of active enhancers
Q36724900	HBx-upregulated lncRNA UCA1 promotes cell growth and tumorigenesis by recruiting EZH2 and repressing p27Kip1/CDK2 signaling.
Q24301601	HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter
Q88187267	HLPI-Ensemble: Prediction of human lncRNA-protein interactions based on ensemble strategy
Q42085279	HOT DNAs: a novel class of developmental enhancers
Q33505920	HRTBLDb: an informative data resource for hormone receptors target binding loci
Q36746454	Haploinsufficiency of SOX5 at 12p12.1 is associated with developmental delays with prominent language delay, behavior problems, and mild dysmorphic features
Q34786964	Haplotype block structure of the genomic region of the mu opioid receptor gene
Q36995321	Haplotype sorting using human fosmid clone end-sequence pairs
Q47597532	Harnessing Gut Microbes for Mental Health: Getting From Here to There
Q58050020	Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex
Q34356521	Helper T cell plasticity: impact of extrinsic and intrinsic signals on transcriptomes and epigenomes
Q60207541	Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer.
Q91752140	Heterogeneity in the extent of linkage disequilibrium among exonic, intronic, non-coding RNA and intergenic chromosome regions
Q36986515	Heterogeneity in vaccine immune response: the role of immunogenetics and the emerging field of vaccinomics
Q33327553	Hidden layers of human small RNAs
Q34224677	Hidden treasures in unspliced EST data
Q41887458	High SINE RNA Expression Correlates with Post-Transcriptional Downregulation of BRCA1.
Q51872521	High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species.
Q45252143	High density DNA methylation array with single CpG site resolution
Q36879769	High expression of long non-coding RNA SBF2-AS1 promotes proliferation in non-small cell lung cancer
Q34388423	High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints
Q33759166	High resolution mapping and positional cloning of ENU-induced mutations in the Rw region of mouse chromosome 5.
Q30496457	High-density SNP association study and copy number variation analysis of the AUTS1 and AUTS5 loci implicate the IMMP2L-DOCK4 gene region in autism susceptibility
Q92716527	High-efficiency genomic editing in Epstein-Barr virus-transformed lymphoblastoid B cells using a single-stranded donor oligonucleotide strategy
Q37259044	High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers.
Q42151086	High-resolution genome-wide mapping of the primary structure of chromatin
Q28266995	High-resolution mapping and characterization of open chromatin across the genome
Q33375030	High-resolution mapping of expression-QTLs yields insight into human gene regulation
Q34697960	High-resolution mapping of h1 linker histone variants in embryonic stem cells
Q35634495	High-resolution mapping of open chromatin in the rice genome
Q34022627	High-resolution mapping studies of chromatin and gene regulatory elements
Q30376217	High-throughput RNA sequencing reveals structural differences of orthologous brain-expressed genes between western lowland gorillas and humans
Q37143254	High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites
Q26823498	High-throughput sequencing for biology and medicine
Q37661361	Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs
Q40133912	Highly sensitive and ultrafast read mapping for RNA-seq analysis
Q91655544	Histone Acetyltransferase p300 Induces De Novo Super-Enhancers to Drive Cellular Senescence
Q24628758	Histone H3K27ac separates active from poised enhancers and predicts developmental state
Q50085988	Histone Marks in the 'Driver's Seat': Functional Roles in Steering the Transcription Cycle.
Q30436256	Histone acetyltransferase Hbo1: catalytic activity, cellular abundance, and links to primary cancers
Q26777269	Histone demethylases in chromatin biology and beyond
Q33899166	Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes
Q46319918	History, Discovery, and Classification of lncRNAs
Q39763266	HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer
Q34426574	Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs
Q33549139	Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
Q34165647	Horizontal gene transfer between bacteria and animals
Q44045526	How can we realize the promise of personalized antidepressant medicines?
Q38620513	How close are we to implementing a genetic risk score for coronary heart disease?
Q28731022	How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience
Q57629179	Human Genome Project
Q28679909	Human Transcriptome and Chromatin Modifications: An ENCODE Perspective
Q28274070	Human accelerated region 1 noncoding RNA is repressed by REST in Huntington's disease
Q36715576	Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs
Q31032840	Human cancer long non-coding RNA transcriptomes
Q34558052	Human disease-associated genetic variation impacts large intergenic non-coding RNA expression
Q42284429	Human evolution: the non-coding revolution
Q43241281	Human genes with CpG island promoters have a distinct transcription-associated chromatin organization
Q29614580	Human genetic variation and its contribution to complex traits
Q38017318	Human genetic variation: new challenges and opportunities for doping control
Q21245451	Human genetics and genomics a decade after the release of the draft sequence of the human genome
Q46201576	Human genome at ten: Life is complicated
Q35018004	Human genome replication proceeds through four chromatin states.
Q35478990	Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk
Q35108213	Human promoters are intrinsically directional
Q34621484	Human transcriptome array for high-throughput clinical studies.
Q36975006	Human vascular endothelial cells transport foreign exosomes from cow's milk by endocytosis
Q30416868	Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes
Q42108477	Hundreds of conserved non-coding genomic regions are independently lost in mammals
Q54526695	Hunting hidden transcripts.
Q30524873	Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.
Q37137148	Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia
Q37446488	Hypomethylation of long interspersed nuclear element-1 (LINE-1) leads to activation of proto-oncogenes in human colorectal cancer metastasis
Q26820767	Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers
Q90533345	Hypoxia-induced H19/YB-1 cascade modulates cardiac remodeling after infarction
Q35022473	Hypoxia-inducible lncRNA-AK058003 promotes gastric cancer metastasis by targeting γ-synuclein
Q35092935	IAOseq: inferring abundance of overlapping genes using RNA-seq data
Q40576605	IDH1 mutation-associated long non-coding RNA expression profile changes in glioma
Q36205754	IL-2 regulates expression of C-MAF in human CD4 T cells
Q33655332	IL-22(+)CD4(+) T cells promote colorectal cancer stemness via STAT3 transcription factor activation and induction of the methyltransferase DOT1L
Q37628955	IRWRLDA: improved random walk with restart for lncRNA-disease association prediction
Q35973324	Id2 deletion attenuates Apc-deficient ileal tumor formation
Q91858157	Identification and Conservation Analysis of Cis-Regulatory Elements in Pig Liver
Q37246050	Identification and Validation of PCAT14 as Prognostic Biomarker in Prostate Cancer
Q60910559	Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)
Q35946390	Identification and analysis of mouse non-coding RNA using transcriptome data
Q36220615	Identification and analysis of the promoter region of the STGC3 gene
Q35078718	Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum
Q33294656	Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome
Q92554904	Identification and characterization of circular RNAs in atrial appendage of patients with atrial fibrillation
Q103836712	Identification and characterization of constrained non-exonic bases lacking predictive epigenomic and transcription factor binding annotations
Q35655079	Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing
Q30662857	Identification and characterization of long non-coding RNAs related to mouse embryonic brain development from available transcriptomic data
Q41561283	Identification and characterization of mRNA-like noncoding RNAs in Salvia miltiorrhiza
Q28730503	Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells
Q43123995	Identification and classification of ncRNA molecules using graph properties
Q34533535	Identification and comparative analysis of ncRNAs in human, mouse and zebrafish indicate a conserved role in regulation of genes expressed in brain
Q35538633	Identification and computational analysis of gene regulatory elements.
Q41838306	Identification and expression patterns of novel long non-coding RNAs in neural progenitors of the developing mammalian cortex
Q37210498	Identification and function of long non-coding RNA.
Q64941168	Identification and validation of potential long non-coding RNA biomarkers in predicting survival of patients with head and neck squamous cell carcinoma.
Q36053910	Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma.
Q91814911	Identification of ACKR1 variants associated with altered Duffy phenotype expression in blood donors from southern Brazil
Q90643254	Identification of Familial Hodgkin Lymphoma Predisposing Genes Using Whole Genome Sequencing
Q35877841	Identification of IRF8, TMEM39A, and IKZF3-ZPBP2 as susceptibility loci for systemic lupus erythematosus in a large-scale multiracial replication study
Q52720485	Identification of Minimal p53 Promoter Region Regulated by MALAT1 in Human Lung Adenocarcinoma Cells.
Q33737762	Identification of Transcription Factor-DNA Interactions In Vivo
Q92382544	Identification of a four-long non-coding RNA signature in predicting breast cancer survival
Q39438577	Identification of a link between Wnt/β-catenin signalling and the cell fusion pathway
Q89341555	Identification of a noncoding RNA‑mediated gene pair‑based regulatory module in Alzheimer's disease
Q49591680	Identification of a progression-associated long non-coding RNA signature for predicting the prognosis of lung squamous cell carcinoma.
Q34458811	Identification of a systemic lupus erythematosus susceptibility locus at 11p13 between PDHX and CD44 in a multiethnic study
Q30653512	Identification of active regulatory regions from DNA methylation data
Q36700193	Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions
Q41094888	Identification of c-Myb Target Genes in K562 Cells Reveals a Role for c-Myb as a Master Regulator
Q38353987	Identification of candidate regulatory SNPs by combination of transcription-factor-binding site prediction, SNP genotyping and haploChIP
Q34256108	Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles.
Q35617343	Identification of cis-regulatory sequence variations in individual genome sequences
Q52564099	Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses.
Q34227904	Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation
Q33483666	Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues
Q37491729	Identification of expressed and conserved human noncoding RNAs
Q35921826	Identification of functionally active, low frequency copy number variants at 15q21.3 and 12q21.31 associated with prostate cancer risk
Q55065060	Identification of genes and pathways related with cerebral small vessel disease based on a long non-coding RNA-mediated, competitive endogenous RNA network.
Q35208823	Identification of genetic variants using bar-coded multiplexed sequencing
Q41981321	Identification of higher-order functional domains in the human ENCODE regions
Q47095453	Identification of islet-enriched long non-coding RNAs contributing to β-cell failure in type 2 diabetes
Q36791535	Identification of linc-NeD125, a novel long non coding RNA that hosts miR-125b-1 and negatively controls proliferation of human neuroblastoma cells
Q35476712	Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer
Q41592814	Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes
Q42317549	Identification of long non-coding RNAs biomarkers for early diagnosis of myocardial infarction from the dysregulated coding-non-coding co-expression network
Q45251665	Identification of long noncoding RNA associated with osteoarthritis in humans.
Q39730301	Identification of long stress-induced non-coding transcripts that have altered expression in cancer
Q38809176	Identification of new SOX2OT transcript variants highly expressed in human cancer cell lines and down regulated in stem cell differentiation.
Q33495737	Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes
Q34080298	Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing
Q35041982	Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing
Q33633465	Identification of protein-coding and non-coding RNA expression profiles in CD34+ and in stromal cells in refractory anemia with ringed sideroblasts
Q34323853	Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.
Q30837406	Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors.
Q33744115	Identification of transcription start sites and preferential expression of select CB2 transcripts in mouse and human B lymphocytes
Q33603978	Identification of two common variants contributing to serum apolipoprotein B levels in Mexicans
Q28478309	Identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue
Q33356000	Identify alternative splicing events based on position-specific evolutionary conservation
Q27004208	Identifying (non-)coding RNAs and small peptides: challenges and opportunities
Q42665464	Identifying ChIP-seq enrichment using MACS.
Q90152277	Identifying Dysregulated lncRNA-Associated ceRNA Network Biomarkers in CML Based on Dynamical Network Biomarkers
Q64097616	Identifying Rare Variant Associations in Admixed Populations
Q33769754	Identifying a high fraction of the human genome to be under selective constraint using GERP++.
Q91107406	Identifying and characterizing functional 3' nucleotide addition in the miRNA pathway
Q37508182	Identifying and characterizing regulatory sequences in the human genome with chromatin accessibility assays
Q28394808	Identifying disease mutations in genomic medicine settings: current challenges and how to accelerate progress
Q35233885	Identifying functional single nucleotide polymorphisms in the human CArGome
Q34025944	Identifying modifier genes of monogenic disease: strategies and difficulties.
Q34280457	Identifying mouse models for skin cancer using the Mouse Tumor Biology Database
Q33455323	Identifying novel constrained elements by exploiting biased substitution patterns
Q31107778	Identifying peaks in *-seq data using shape information
Q37205746	Identifying protein-coding genes in genomic sequences
Q33460925	Identifying regulatory elements in eukaryotic genomes
Q42390810	Illuminating potential technical artifacts of DNA-methylation array probes
Q36997701	Imaging Drosophila gene activation and polymerase pausing in vivo
Q92203199	ImmuneRegulation: a web-based tool for identifying human immune regulatory elements
Q28741370	Immunostaining of modified histones defines high-level features of the human metaphase epigenome
Q35281209	Impact of chromatin structure on sequence variability in the human genome
Q34157417	Impact of nuclear organization and dynamics on epigenetic regulation in the central nervous system: implications for neurological disease states
Q37594577	Implications of chimaeric non-co-linear transcripts
Q35134202	Important biological information uncovered in previously unaligned reads from chromatin immunoprecipitation experiments (ChIP-Seq).
Q33511935	Improved RNA preservation for immunolabeling and laser microdissection.
Q33747787	Improved detection of rare genetic variants for diseases
Q30530281	Improved predictions of transcription factor binding sites using physicochemical features of DNA.
Q37682396	Improved regulatory element prediction based on tissue-specific local epigenomic signatures
Q38753861	Improving understanding of chromatin regulatory proteins and potential implications for drug discovery
Q35088686	In silico Identification of SFRP1 as a Hypermethylated Gene in Colorectal Cancers
Q39899241	In silico prediction of long intergenic non-coding RNAs in sheep
Q36580252	In vitro analysis of promoter activity in Müller cells
Q33548651	In-depth transcriptome analysis reveals novel TARs and prevalent antisense transcription in human cell lines
Q45943468	In-line probing of RNA G-quadruplexes.
Q35741562	In-silico identification and functional validation of allele-dependent AR enhancers
Q36022170	Incorporating prior information into association studies
Q38706056	Increased HAGLR expression promotes non-small cell lung cancer proliferation and invasion via enhanced de novo lipogenesis
Q46303860	Increased transcript diversity: novel splicing variants of Machado-Joseph disease gene (ATXN3).
Q36517959	Increasing power in association studies by using linkage disequilibrium structure and molecular function as prior information
Q27860597	Induced pluripotent stem cell lines derived from human somatic cells
Q38362040	Inducible RNAi system and its application in novel therapeutics
Q37540019	Induction of the liver cancer-down-regulated long noncoding RNA uc002mbe.2 mediates trichostatin-induced apoptosis of liver cancer cells
Q42228790	Inference of isoforms from short sequence reads
Q31121005	Inference of transcriptional regulation using gene expression data from the bovine and human genomes
Q31026943	Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain
Q33366448	Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression
Q31020447	Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data.
Q33908006	Inferring transcription factor complexes from ChIP-seq data
Q36744321	Influence of child abuse on adult depression: moderation by the corticotropin-releasing hormone receptor gene
Q38043287	Informatics and clinical genome sequencing: opening the black box.
Q50994025	Information theory, gene expression, and combinatorial regulation: a quantitative analysis.
Q35018507	Inheritable and precise large genomic deletions of non-coding RNA genes in zebrafish using TALENs
Q90706040	Inhibition of long non-coding RNA-AWPPH decreases osteosarcoma cell proliferation, migration and invasion
Q22122172	Initial impact of the sequencing of the human genome
Q37035264	Innovative genomic-based model for personalized treatment of gastric cancer: integrating current standards and new technologies.
Q24611607	Insights from genomic profiling of transcription factors
Q58794879	Insights into the development of chemical probes for RNA
Q31115631	Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
Q35079119	Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4.
Q33492327	Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor
Q36228477	Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites
Q35040952	Integrated genome-wide chromatin occupancy and expression analyses identify key myeloid pro-differentiation transcription factors repressed by Myb
Q24656531	Integrated genomic approaches implicate osteoglycin (Ogn) in the regulation of left ventricular mass
Q28077579	Integrating Epigenomics into the Understanding of Biomedical Insight
Q24648075	Integrating biological data--the Distributed Annotation System
Q35195359	Integrating diverse datasets improves developmental enhancer prediction
Q33631737	Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example.
Q33891295	Integrating one-dimensional and three-dimensional maps of genomes
Q37205751	Integrating sequence, evolution and functional genomics in regulatory genomics
Q36354909	Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes
Q31159857	Integration of VDR genome wide binding and GWAS genetic variation data reveals co-occurrence of VDR and NF-κB binding that is linked to immune phenotypes.
Q28069602	Integration of complex data sources to provide biologic insight into pulmonary vascular disease (2015 Grover Conference Series)
Q33962508	Integration of genome-wide computation DRE search, AhR ChIP-chip and gene expression analyses of TCDD-elicited responses in the mouse liver
Q33795797	Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries
Q27023206	Integration of the transcriptional networks regulating limb morphogenesis
Q35620383	Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer
Q33756305	Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions
Q28301622	Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
Q34503932	Integrative annotation of chromatin elements from ENCODE data
Q29547647	Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
Q48209582	Integrative classification of human coding and noncoding genes through RNA metabolism profiles
Q34194768	Integrative eQTL-based analyses reveal the biology of breast cancer risk loci
Q58707578	Integrative epigenomic analysis in differentiated human primary bronchial epithelial cells exposed to cigarette smoke
Q39627440	Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus
Q33496328	Integrative modeling of transcriptional regulation in response to antirheumatic therapy
Q52644985	Integrative single-cell omics analyses reveal epigenetic heterogeneity in mouse embryonic stem cells.
Q90620361	Interaction among inflammasome, autophagy and non-coding RNAs: new horizons for drug
Q98771711	Interactions With Histone H3 & Tools to Study Them
Q35783443	Interleukin-4 production by follicular helper T cells requires the conserved Il4 enhancer hypersensitivity site V
Q35099021	Intermediate DNA methylation is a conserved signature of genome regulation
Q38628190	Intersection of genetics and epigenetics in monozygotic twin genomes
Q57288533	Interspecies Heterogeneity in the Hepatic Transcriptomic Response to AHR Activation by Dioxin
Q34205926	Intracranial aneurysm risk locus 5q23.2 is associated with elevated systolic blood pressure
Q52368938	Intrinsic DNA binding properties demonstrated for lineage-specifying basic helix-loop-helix transcription factors.
Q51903640	Introduction to special issue on RNA.
Q37446479	Intronic enhancers coordinate epithelial-specific looping of the active CFTR locus
Q33549927	Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects
Q34508265	Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus
Q39976644	Inversing the natural hydrogen bonding rule to selectively amplify GC-rich ADAR-edited RNAs
Q40531381	Investigation of TGFβ1-Induced Long Noncoding RNAs in Endothelial Cells
Q40561776	Investigation of novel LPS-induced differentially expressed long non-coding RNAs in endothelial cells.
Q37239522	In Vivo Characterization of Linc-p21 Reveals Functional cis-Regulatory DNA Elements
Q36223434	Is Whole Exome Sequencing Clinically Practical in the Management of Pediatric Crohn's Disease?
Q34044470	Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?
Q41391916	Is genetic testing of value in predicting and treating obesity?
Q58883624	Is sequencing enlightenment ending the dark age of the transcriptome?
Q56944014	Is there a genetic basis for acute coronary syndrome?
Q39106539	IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly
Q41789259	Isoform-selective induction of human p110δ PI3K expression by TNFα: identification of a new and inducible PIK3CD promoter
Q38355701	Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).
Q33624325	It Is Imperative to Establish a Pellucid Definition of Chimeric RNA and to Clear Up a Lot of Confusion in the Relevant Research
Q30560716	Iterative correction of Hi-C data reveals hallmarks of chromosome organization
Q24650787	JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
Q36291088	KATZLDA: KATZ measure for the lncRNA-disease association prediction
Q26849813	Keeping abreast with long non-coding RNAs in mammary gland development and breast cancer
Q37199118	Knock-in mouse lines expressing either mitochondrial or microsomal CYP1A1: differing responses to dietary benzo[a]pyrene as proof of principle
Q35669166	LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes
Q92483778	LINC00346 promotes pancreatic cancer progression through the CTCF-mediated Myc transcription
Q36414307	LINE-1 hypomethylation in normal colon mucosa is associated with poor survival in Chinese patients with sporadic colon cancer.
Q90376611	LNRLMI: Linear neighbour representation for predicting lncRNA-miRNA interactions
Q42765333	LPS and poly I:C induce chromatin modifications at a novel upstream region of the IL-23 p19 promoter.
Q36647161	Lamin A/C is expressed in pluripotent mouse embryonic stem cells
Q41275685	Landscape of Long Noncoding RNAs in Psoriatic and Healthy Skin
Q29547467	Landscape of transcription in human cells
Q34172336	Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor
Q33785769	Large-scale discovery and characterization of protein regulatory motifs in eukaryotes
Q35635739	Large-scale discovery of enhancers from human heart tissue
Q35493825	Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome.
Q37825463	Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies
Q33631309	Laying a solid foundation for Manhattan--'setting the functional basis for the post-GWAS era'.
Q39033323	Leveraging cross-species transcription factor binding site patterns: from diabetes risk loci to disease mechanisms
Q33571814	Leveraging genetic variability across populations for the identification of causal variants.
Q52687647	Leveraging human genetic and adverse outcome pathway (AOP) data to inform susceptibility in human health risk assessment.
Q28704307	Leveraging models of cell regulation and GWAS data in integrative network-based association studies
Q51889617	Levers and fulcrums: progress in cis-regulatory motif models.
Q48178037	Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World
Q36300009	Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
Q33615383	Light whole genome sequence for SNP discovery across domestic cat breeds
Q35126344	Limits of sequence and functional conservation
Q47883740	Linc-ROR induces epithelial-mesenchymal transition and contributes to drug resistance and invasion of breast cancer cells
Q52664066	Linc00659, a long noncoding RNA, acts as novel oncogene in regulating cancer cell growth in colorectal cancer.
Q40090464	LincRNA DYN-LRB2-2 upregulates cholesterol efflux by decreasing TLR2 expression in macrophages
Q58762035	LincRNA H19 protects from dietary obesity by constraining expression of monoallelic genes in brown fat
Q51676483	LincRNA-uc002yug.2 involves in alternative splicing of RUNX1 and serves as a predictor for esophageal cancer and prognosis.
Q39202991	Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration
Q39239895	Linking DNA methyltransferases to epigenetic marks and nucleosome structure genome-wide in human tumor cells
Q26782744	Linking RNA biology to lncRNAs
Q49342225	Linking diabetic vascular complications with LncRNAs.
Q34298038	Linking disease associations with regulatory information in the human genome
Q26998850	Linking genome to epigenome
Q39273323	Linking the DNA strand asymmetry to the spatio-temporal replication program. I. About the role of the replication fork polarity in genome evolution
Q46246927	Living Organisms Author Their Read-Write Genomes in Evolution
Q36028963	Lnc-CC3 increases metastasis in cervical cancer by increasing Slug expression
Q48518843	LncNetP, a systematical lncRNA prioritization approach based on ceRNA and disease phenotype association assumptions.
Q37642607	LncRNA AK023948 is a positive regulator of AKT.
Q92645615	LncRNA CCND2-AS1 is up-regulated and regulates proliferation, migration, and invasion in breast cancer
Q64135184	LncRNA DUXAP9-206 directly binds with Cbl-b to augment EGFR signaling and promotes non-small cell lung cancer progression
Q48121278	LncRNA HOTAIR promotes cell migration and invasion by regulating MKL1 via inhibition miR206 expression in HeLa cells.
Q104486545	LncRNA HOTAIRM1 promotes MDSC expansion and suppressive functions through the HOXA1-miR124 axis during HCV infection
Q47216105	LncRNA and mRNA integration network reconstruction reveals novel key regulators in esophageal squamous-cell carcinoma
Q41958683	LncRNA and mRNA interaction study based on transcriptome profiles reveals potential core genes in the pathogenesis of human glioblastoma multiforme.
Q90683951	LncRNA and mRNA interaction study based on transcriptome profiles reveals potential core genes in the pathogenesis of human thoracic aortic dissection
Q64912139	LncRNA papillary thyroid carcinoma susceptibility candidate 3 (PTCSC3) regulates the proliferation of human periodontal ligament stem cells and toll-like receptor 4 (TLR4) expression to improve periodontitis.
Q34431243	LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma
Q50135967	LncRNA profiling of skeletal muscles in Large White pigs and Mashen pigs during development.
Q91949549	LncRNA regulates tomato fruit cracking by coordinating gene expression via a hormone-redox-cell wall network
Q39366670	LncRNA-mediated regulation of cell signaling in cancer.
Q36030703	LncRNApred: Classification of Long Non-Coding RNAs and Protein-Coding Transcripts by the Ensemble Algorithm with a New Hybrid Feature
Q90048878	LncRNAs in molluscan and mammalian stages of parasitic schistosomes are developmentally-regulated and coordinately expressed with protein-coding genes
Q38195844	LncRNAs: New Players in Apoptosis Control.
Q37358871	Local DNA topography correlates with functional noncoding regions of the human genome
Q33327760	Local conservation scores without a priori assumptions on neutral substitution rates
Q39396601	Localized DNA cleavage secondary to genotoxic exposure adjacent to an Alu inverted repeat
Q89753025	Locate-R: Subcellular localization of long non-coding RNAs using nucleotide compositions
Q43509655	Locking in on the human methylome.
Q26786643	Long Non-Coding RNAs as Master Regulators in Cardiovascular Diseases
Q88643636	Long Non-Coding RNAs in Multifactorial Diseases: Another Layer of Complexity
Q48124218	Long Non-Coding RNAs in Multiple Myeloma
Q47111389	Long Non-Coding RNAs: Emerging and Versatile Regulators in Host-Virus Interactions.
Q26800873	Long Non-Coding RNAs: The Key Players in Glioma Pathogenesis
Q42369135	Long Non-coding RNAs in Hepatitis C Virus-Infected Cells.
Q49192525	Long Non-coding RNAs, Novel Culprits, or Bodyguards in Neurodegenerative Diseases.
Q91713405	Long Non-coding RNAs: Major Regulators of Cell Stress in Cancer
Q41271817	Long Noncoding RNA BC032913 as a Novel Therapeutic Target for Colorectal Cancer that Suppresses Metastasis by Upregulating TIMP3.
Q64917563	Long Noncoding RNA Can Be a Probable Mechanism and a Novel Target for Diagnosis and Therapy in Fragile X Syndrome.
Q50187327	Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function.
Q47146302	Long Noncoding RNA HOTAIR Modulates MiR-206-mediated Bcl-w Signaling to Facilitate Cell Proliferation in Breast Cancer
Q48130025	Long Noncoding RNA uc001pwg.1 Is Downregulated in Neointima in Arteriovenous Fistulas and Mediates the Function of Endothelial Cells Derived from Pluripotent Stem Cells
Q47393672	Long Noncoding RNAs as a Key Player in Hepatocellular Carcinoma
Q58607301	Long Noncoding RNAs in Atherosclerosis: JACC Review Topic of the Week
Q38641303	Long Noncoding RNAs in Cancer and Therapeutic Potential.
Q46667213	Long Noncoding RNAs in Diabetes and Diabetic Complications
Q37982678	Long Noncoding RNAs: Insights from Biological Features and Functions to Diseases.
Q34143034	Long intergenic non-coding RNA HOTAIRM1 regulates cell cycle progression during myeloid maturation in NB4 human promyelocytic leukemia cells
Q33988959	Long intergenic non-coding RNAs (LincRNAs) identified by RNA-seq in breast cancer
Q34676547	Long intergenic noncoding RNAs: new links in cancer progression
Q37345674	Long intronic noncoding RNA transcription: expression noise or expression choice?
Q49789635	Long non-coding RNA AC026166.2-001 inhibits cell proliferation and migration in laryngeal squamous cell carcinoma by regulating the miR-24-3p/p27 axis.
Q38633650	Long non-coding RNA Fer-1-like family member 4 is overexpressed in human glioblastoma and regulates the tumorigenicity of glioma cells
Q28243266	Long non-coding RNA INXS is a critical mediator of BCL-XS induced apoptosis
Q36780620	Long non-coding RNA Linc00152 is involved in cell cycle arrest, apoptosis, epithelial to mesenchymal transition, cell migration and invasion in gastric cancer.
Q47314991	Long non-coding RNA MEG3 functions as a competing endogenous RNA to regulate ischemic neuronal death by targeting miR-21/PDCD4 signaling pathway
Q35010490	Long non-coding RNA MEG3 inhibits NSCLC cells proliferation and induces apoptosis by affecting p53 expression
Q37370755	Long non-coding RNA Malat1 promotes neurite outgrowth through activation of ERK/MAPK signalling pathway in N2a cells
Q33695009	Long non-coding RNA UCA1 promotes breast tumor growth by suppression of p27 (Kip1)
Q92565883	Long non-coding RNA XIST predicting advanced clinical parameters in cancer: A Meta-Analysis and case series study in a single institution
Q38645336	Long non-coding RNA and tumor hypoxia: new players ushered toward an old arena
Q38633685	Long non-coding RNA expression profile in cervical cancer tissues
Q36790436	Long non-coding RNA in cancer
Q33892569	Long non-coding RNA linc00673 regulated non-small cell lung cancer proliferation, migration, invasion and epithelial mesenchymal transition by sponging miR-150-5p
Q34028548	Long non-coding RNA modifies chromatin: epigenetic silencing by long non-coding RNAs
Q52888387	Long non-coding RNA tumor suppressor candidate 7 functions as a tumor suppressor and inhibits proliferation in osteosarcoma.
Q34000582	Long non-coding RNA urothelial carcinoma associated 1 induces cell replication by inhibiting BRG1 in 5637 cells
Q26999388	Long non-coding RNA-dependent transcriptional regulation in neuronal development and disease
Q40581541	Long non-coding RNA: A new paradigm for lung cancer
Q27000700	Long non-coding RNA: a new player in cancer
Q58558029	Long non-coding RNA: its evolutionary relics and biological implications in mammals: a review
Q39374107	Long non-coding RNAs (lncRNAs) and their transcriptional control of inflammatory responses
Q36810743	Long non-coding RNAs (lncRNAs) and viral infections
Q34627040	Long non-coding RNAs and enhancers
Q38027980	Long non-coding RNAs and human disease
Q38065895	Long non-coding RNAs and p53 regulation.
Q28082138	Long non-coding RNAs and their biological roles in plants
Q30301152	Long non-coding RNAs as emerging regulators of differentiation, development, and disease
Q39454814	Long non-coding RNAs as novel players in β cell function and type 1 diabetes
Q64226411	Long non-coding RNAs as pan-cancer master gene regulators of associated protein-coding genes: a systems biology approach
Q26827949	Long non-coding RNAs as regulators of the endocrine system
Q34267035	Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes
Q58101203	Long non-coding RNAs have age-dependent diurnal expression that coincides with age-related changes in genome-wide facultative heterochromatin
Q48295735	Long non-coding RNAs in aging organs and tissues
Q35016600	Long non-coding RNAs in cancer and development: where do we go from here?
Q38219896	Long non-coding RNAs in cancer invasion and metastasis
Q38056501	Long non-coding RNAs in cancer progression
Q38194035	Long non-coding RNAs in colorectal cancer: implications for pathogenesis and clinical application
Q26996377	Long non-coding RNAs in gastric cancer: versatile mechanisms and potential for clinical translation
Q37325884	Long non-coding RNAs in hematologic malignancies: road to translational research.
Q38961358	Long non-coding RNAs in human early embryonic development and their potential in ART.
Q36446804	Long non-coding RNAs in innate and adaptive immunity
Q24595656	Long non-coding RNAs in nervous system function and disease
Q28070169	Long non-coding RNAs in normal and malignant hematopoiesis
Q37954365	Long non-coding RNAs in nuclear bodies
Q50776383	Long non-coding RNAs in stem cell pluripotency.
Q64931707	Long non-coding RNAs in the failing heart and vasculature.
Q39259710	Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.
Q37745577	Long noncoding RNA BLACAT1 indicates a poor prognosis of colorectal cancer and affects cell proliferation by epigenetically silencing of p15
Q92260953	Long noncoding RNA CCDC144NL-AS1 knockdown induces naïve-like state conversion of human pluripotent stem cells
Q53229252	Long noncoding RNA GAS5 affects cell proliferation and predicts a poor prognosis in patients with colorectal cancer.
Q53210669	Long noncoding RNA MALAT1 as a potential therapeutic target in osteosarcoma.
Q89983206	Long noncoding RNA TRPM2-AS acts as a microRNA sponge of miR-612 to promote gastric cancer progression and radioresistance
Q34080272	Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes
Q47848636	Long noncoding RNA identification in lymphoma
Q64264163	Long noncoding RNA regulates tumor cell proliferation and invasion by epithelial-mesenchymal transition in gastric cancer
Q39267063	Long noncoding RNA: a crosslink in biological regulatory network
Q38077502	Long noncoding RNA: an emerging paradigm of cancer research
Q35567454	Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins
Q37187785	Long noncoding RNAs as enhancers of gene expression
Q36446242	Long noncoding RNAs in C. elegans
Q38625682	Long noncoding RNAs in T lymphocytes
Q27692044	Long noncoding RNAs in mammalian cells: what, where, and why?
Q38638146	Long noncoding RNAs in regulation of human breast cancer
Q36553653	Long noncoding RNAs in viral infections
Q29614328	Long noncoding RNAs with enhancer-like function in human cells
Q92486982	Long noncoding RNAs, emerging and versatile regulators of tumor-induced angiogenesis
Q90261882	Long noncoding RNAs: Novel regulators of virus-host interactions
Q36365731	Long noncoding RNAs: Re-writing dogmas of RNA processing and stability
Q38466810	Long noncoding RNAs: a potential novel class of cancer biomarkers
Q38200054	Long noncoding RNAs: emerging stars in gene regulation, epigenetics and human disease.
Q37524850	Long noncoding RNAs: fresh perspectives into the RNA world
Q29615826	Long noncoding RNAs: functional surprises from the RNA world
Q37748073	Long noncoding RNAs: implications for antigen receptor diversification
Q26991873	Long noncoding RNAs: past, present, and future
Q35576601	Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer
Q28475448	Long- and short-term selective forces on malaria parasite genomes
Q33633542	Long-range bidirectional strand asymmetries originate at CpG islands in the human genome
Q37123083	Long-range chromosomal interactions and gene regulation
Q33377028	Long-range enhancer associated with chromatin looping allows AP-1 regulation of the peptidylarginine deiminase 3 gene in differentiated keratinocyte
Q37087582	Long-range regulation of alpha-globin gene expression
Q36775783	Long-range regulation of cytokine gene expression.
Q64092194	Long-read single-molecule maps of the functional methylome
Q34924659	Loss of the Notch effector RBPJ promotes tumorigenesis
Q36552835	Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development
Q36972162	Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs
Q87516584	Low expression of long noncoding XLOC_010588 indicates a poor prognosis and promotes proliferation through upregulation of c-Myc in cervical cancer
Q37553921	Lowering industry firewalls: pre-competitive informatics initiatives in drug discovery
Q29048160	MAISTAS: a tool for automatic structural evaluation of alternative splicing products
Q33727896	MALAT1 promotes the proliferation and metastasis of gallbladder cancer cells by activating the ERK/MAPK pathway
Q38937217	MALAT1 promotes the proliferation and metastasis of osteosarcoma cells by activating the PI3K/Akt pathway
Q58699711	MALAT1-miR663a negative feedback loop in colon cancer cell functions through direct miRNA-lncRNA binding
Q36959606	MECP2 genomic structure and function: insights from ENCODE
Q37400271	MEG3, HCN3 and linc01105 influence the proliferation and apoptosis of neuroblastoma cells via the HIF-1α and p53 pathways
Q24651886	MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
Q24646100	MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles
Q55236735	MICMIC: identification of DNA methylation of distal regulatory regions with causal effects on tumorigenesis.
Q33809896	MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data
Q38289483	MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs
Q35149681	MYC regulates the non-coding transcriptome.
Q33741943	Machine learning and genome annotation: a match meant to be?
Q37954546	Making a long story short: noncoding RNAs and chromosome change
Q34233855	Making the right connections: biological networks in the light of evolution
Q41970788	Malignant transformation of colonic epithelial cells by a colon-derived long noncoding RNA.
Q24654249	Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
Q38654086	Mapping Transcription Regulatory Networks with ChIP-seq and RNA-seq.
Q29547552	Mapping and analysis of chromatin state dynamics in nine human cell types
Q22122215	Mapping and sequencing of structural variation from eight human genomes
Q28087013	Mapping asthma-associated variants in admixed populations
Q42851348	Mapping genome-wide transcription factor binding sites in frozen tissues
Q36633198	Mapping nucleosome positions using DNase-seq
Q36719124	Mapping of small RNAs in the human ENCODE regions
Q28306149	Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies
Q38773403	Mapping rare and common causal alleles for complex human diseases
Q41977742	Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).
Q57634895	Mapping the strand-specific transcriptome of fission yeast
Q33920114	Mapping whole genome shotgun sequence and variant calling in mammalian species without their reference genomes
Q37401098	Maps of context-dependent putative regulatory regions and genomic signal interactions.
Q33954469	Maps of open chromatin guide the functional follow-up of genome-wide association signals: application to hematological traits
Q42132254	Marker selection for genetic case-control association studies
Q36879018	Markers of oxidant stress that are clinically relevant in aging and age-related disease
Q37588934	Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D.
Q28749162	Massive turnover of functional sequence in human and other mammalian genomes
Q33886396	Massive-scale RNA-Seq analysis of non ribosomal transcriptome in human trisomy 21.
Q30455191	Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting
Q89687006	Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP)
Q38040099	Measures of compositional strand bias related to replication machinery and its applications
Q90724782	Mechanisms Underlying Hepatitis C Virus-Associated Hepatic Fibrosis
Q47146647	Mechanisms of Long Non-Coding RNAs in the Assembly and Plasticity of Neural Circuitry
Q34399564	Mechanisms of dietary response in mice and primates: a role for EGR1 in regulating the reaction to human-specific nutritional content.
Q37062873	Mechanisms of disease: genetic insights into the etiology of type 2 diabetes and obesity
Q57176927	Mechanistic Insights Into the Interaction Between Transcription Factors and Epigenetic Modifications and the Contribution to the Development of Obesity
Q36125057	Mechanistic Roles of Noncoding RNAs in Lung Cancer Biology and Their Clinical Implications
Q34493237	Melanoma risk loci as determinants of melanoma recurrence and survival
Q26992084	Mendelian disorders of the epigenetic machinery: tipping the balance of chromatin states
Q30434776	Menin and RNF20 recruitment is associated with dynamic histone modifications that regulate signal transducer and activator of transcription 1 (STAT1)-activated transcription of the interferon regulatory factor 1 gene (IRF1).
Q31140977	Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems
Q40103223	Meta-analysis of primary target genes of peroxisome proliferator-activated receptors
Q35921693	Meta-analysis of the TNFAIP3 region in psoriasis reveals a risk haplotype that is distinct from other autoimmune diseases
Q33302977	MetaProm: a neural network based meta-predictor for alternative human promoter prediction
Q35860593	Metastases suppressor NME2 associates with telomere ends and telomerase and reduces telomerase activity within cells.
Q28681049	Methodological challenges of genome-wide association analysis in Africa
Q37331268	Methods for analysis in pharmacogenomics: lessons from the Pharmacogenetics Research Network Analysis Group
Q33893167	Methods in DNA methylation profiling
Q42239743	Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
Q47617574	MiRNA-513a-5p Inhibits Progesterone Receptor Expression and Constitutes a Risk Factor For Breast Cancer: The ORDET Prospective Study.
Q100307409	MiRNAs, lncRNAs, and circular RNAs as mediators in hypertension-related vascular smooth muscle cell dysfunction
Q58883610	Mice in the ENCODE spotlight
Q35741348	MicroRNA and transcription factor mediated regulatory network analysis reveals critical regulators and regulatory modules in myocardial infarction
Q27010206	MicroRNA, nutrition, and cancer prevention
Q29871002	MicroRNA-223 regulates Glut4 expression and cardiomyocyte glucose metabolism
Q45944835	MicroRNAs and complex diseases: from experimental results to computational models.
Q26752710	MicroRNAs as regulators of apoptosis mechanisms in cancer
Q38595212	MicroRNAs as regulators of beta-cell function and dysfunction
Q38821605	MicroRNAs, Regulatory Networks, and Comorbidities: Decoding Complex Systems.
Q38050081	MicroRNAs, transforming growth factor beta-1, and tissue fibrosis.
Q47147590	Microarray Analysis Reveals a Potential Role of lncRNA Expression in 3,4-Benzopyrene/Angiotensin II-Activated Macrophage in Abdominal Aortic Aneurysm.
Q26786123	Microarray experiments and factors which affect their reliability
Q36213198	Microarray expression profiling of dysregulated long non-coding RNAs in triple-negative breast cancer
Q28727826	Microarray-based sketches of the HERV transcriptome landscape
Q30481756	Microdroplet-based PCR enrichment for large-scale targeted sequencing
Q27011558	Microglia recapitulate a hematopoietic master regulator network in the aging human frontal cortex
Q55380518	Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics.
Q90587378	Microtia epigenetics: An overview of review and new viewpoint
Q33888869	Mind the dbGAP: the application of data mining to identify biological mechanisms
Q34621690	Minicircle DNA-based gene therapy coupled with immune modulation permits long-term expression of α-L-iduronidase in mice with mucopolysaccharidosis type I
Q38951218	Mining long noncoding RNA in livestock
Q27011299	Minireview: Long noncoding RNAs: new "links" between gene expression and cellular outcomes in endocrinology
Q48035224	Missing lincs in the transcriptome
Q38126982	Mitochondrial DNA methylation as a next-generation biomarker and diagnostic tool
Q48161344	Model selection in Bayesian segmentation of multiple DNA alignments
Q38357932	Model-based probe set optimization for high-performance microarrays
Q35672244	Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells
Q33381636	Modifier effects between regulatory and protein-coding variation
Q47554210	Modular discovery of monomeric and dimeric transcription factor binding motifs for large data sets
Q29617829	Modular regulatory principles of large non-coding RNAs
Q43878782	Molecular Crosstalking among Noncoding RNAs: A New Network Layer of Genome Regulation in Cancer
Q38202466	Molecular Functions of Long Non-Coding RNAs in Plants
Q47558852	Molecular Network-Based Identification of Competing Endogenous RNAs in Thyroid Carcinoma.
Q92402873	Molecular Systems Biology of Neurodevelopmental Disorders, Rett Syndrome as an Archetype
Q57634887	Molecular biology: RNA discrimination
Q37722954	Molecular epidemiology and its current clinical use in cancer management
Q21131260	Molecular evolution of the non-coding eosinophil granule ontogeny transcript
Q22252694	Molecular genetic analysis of Down syndrome
Q37571215	Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations
Q41990386	Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing
Q55446405	Molecular mechanisms and function prediction of long noncoding RNA.
Q35788557	Molecular mechanisms controlling CFTR gene expression in the airway
Q36991523	Molecular mechanisms underlying chemical liver injury
Q57029048	Molecular network-based identification of competing endogenous RNAs and mRNA signatures that predict survival in prostate cancer
Q36988816	Molecular profiling of human mammary gland links breast cancer risk to a p27(+) cell population with progenitor characteristics.
Q35789183	Molecular targets of omega 3 and conjugated linoleic Fatty acids - "micromanaging" cellular response.
Q36494032	More controversy than ever - challenges and promises towards personalized treatment of gastric cancer
Q24651904	Mosaic retroposon insertion patterns in placental mammals
Q21090180	Most "dark matter" transcripts are associated with known genes
Q33575022	Most transcription factor binding sites are in a few mosaic classes of the human genome
Q47747889	Mouse Genetic Analysis of Bone Marrow Stem Cell Niches: Technological Pitfalls, Challenges, and Translational Considerations
Q55050360	Moving AHEAD with an international human epigenome project.
Q38250169	Multi-layered global gene regulation in mouse embryonic stem cells
Q24618202	Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences
Q33406677	Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?
Q30426239	Multiple apical plasma membrane constituents are associated with susceptibility to meconium ileus in individuals with cystic fibrosis
Q28242198	Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes
Q34276681	Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes
Q44399629	Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm.
Q29617236	Multivalent engagement of chromatin modifications by linked binding modules
Q33688604	Multivariate Hawkes process models of the occurrence of regulatory elements
Q39625408	Mutant SOD1 and mitochondrial damage alter expression and splicing of genes controlling neuritogenesis in models of neurodegeneration.
Q38347628	Mutational analysis of the poly(ADP-ribosyl)ation sites of the transcription factor CTCF provides an insight into the mechanism of its regulation by poly(ADP-ribosyl)ation
Q34388520	Mutational signatures of de-differentiation in functional non-coding regions of melanoma genomes
Q24613553	Mutations in the RNA exosome component gene EXOSC3 cause pontocerebellar hypoplasia and spinal motor neuron degeneration
Q50225369	Myc target gene, long intergenic noncoding RNA, Linc00176 in hepatocellular carcinoma regulates cell cycle and cell survival by titrating tumor suppressor microRNAs.
Q91386608	Myc/Max dependent intronic long antisense noncoding RNA, EVA1A-AS, suppresses the expression of Myc/Max dependent anti-proliferating gene EVA1A in a U2 dependent manner
Q30838313	Myotonic dystrophy type 1 patient-derived iPSCs for the investigation of CTG repeat instability.
Q58603802	N-Acetylglutamate Synthase Deficiency Due to a Recurrent Sequence Variant in the N-acetylglutamate Synthase Enhancer Region
Q36576671	NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression
Q37061160	NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors
Q34509329	NFAT and IRF proteins regulate transcription of the anti-HIV gene, APOBEC3G
Q38404295	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality
Q28660709	NONCODEv4: exploring the world of long non-coding RNA genes
Q21245452	Naming 'junk': human non-protein coding RNA (ncRNA) gene nomenclature
Q30402688	Nanopore Sequencing: Electrical Measurements of the Code of Life
Q50649873	Nanoscale chromatin profiling of gastric adenocarcinoma reveals cancer-associated cryptic promoters and somatically acquired regulatory elements.
Q28302903	Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
Q48308600	Natural Antisense Transcripts: Molecular Mechanisms and Implications in Breast Cancers
Q21263031	Natural antisense transcript of natriuretic peptide precursor A (NPPA): structural organization and modulation of NPPA expression
Q35640078	Natural antisense transcript: a concomitant engagement with protein-coding transcript
Q35118800	Natural antisense transcripts and long non-coding RNA in Neurospora crassa
Q37420349	Natural variation in the histone demethylase, KDM4C, influences expression levels of specific genes including those that affect cell growth
Q88633505	Navigating the Sea of Long Noncoding RNAs: ZFAS1, Friend or Foe?
Q35582253	Near-neutrality, robustness, and epigenetics
Q33995474	Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data
Q24655151	Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes
Q36050875	Nested genes and increasing organizational complexity of metazoan genomes
Q39352255	Network analysis of icb-1 gene function in human breast cancer cells
Q58779278	Network-Based Approaches to Explore Complex Biological Systems towards Network Medicine
Q33584524	Networks and pathways in pigmentation, health, and disease
Q35695044	Networks of intergenic long-range enhancers and snpRNAs drive castration-resistant phenotype of prostate cancer and contribute to pathogenesis of multiple common human disorders
Q37404882	Neural stem cell transcriptional networks highlight genes essential for nervous system development
Q36638284	Neurodegeneration the RNA way
Q48149496	Neurodevelopmental and neuropsychiatric disorders represent an interconnected molecular system
Q34121353	Neurotoxic mechanisms of DNA damage: focus on transcriptional inhibition
Q57160077	New Insights Into the Long Non-coding RNA SRA: Physiological Functions and Mechanisms of Action
Q61813973	New Insights into the Interplay between Non-Coding RNAs and RNA-Binding Protein HnRNPK in Regulating Cellular Functions
Q50135801	New Molecular Diagnostic Approaches to Bacterial Infections and Antibacterial Resistance.
Q24632878	New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
Q36984901	New links to the pathogenesis of Crohn disease provided by genome-wide association scans
Q33953031	New methods as alternative or corrective measures for the pitfalls and artifacts of reverse transcription and polymerase chain reactions (RT-PCR) in cloning chimeric or antisense-accompanied RNA
Q33791621	New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing
Q34701947	New properties of Drosophila scs and scs' insulators
Q81306419	New roles for large and small viral RNAs in evading host defences
Q33803561	Next generation sequencing based approaches to epigenomics
Q36458217	Next generation sequencing in clinical medicine: Challenges and lessons for pathology and biomedical informatics
Q37637014	Next generation sequencing: advances in characterizing the methylome
Q37296992	Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond
Q34973377	Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
Q51780346	Next-generation sequencing and epigenome technologies: potential medical applications.
Q35539126	Next-generation sequencing for the diagnosis of cardiac arrhythmia syndromes
Q39900008	Next-generation sequencing of cancer genomes: back to the future.
Q34118940	Next-generation sequencing techniques for eukaryotic microorganisms: sequencing-based solutions to biological problems.
Q33555502	Next-generation sequencing.
Q33565443	Next-generation sequencing: from understanding biology to personalized medicine
Q42614334	No-match ORESTES explored as tumor markers
Q33878483	Non-Coding Loss-of-Function Variation in Human Genomes
Q26774456	Non-Coding RNAs in Castration-Resistant Prostate Cancer: Regulation of Androgen Receptor Signaling and Cancer Metabolism
Q40737841	Non-Coding RNAs in Neural Networks, REST-Assured
Q34605730	Non-Coding RNAs: Functional Aspects and Diagnostic Utility in Oncology
Q44433053	Non-CpG island promoter hypomethylation and miR-149 regulate the expression of SRPX2 in colorectal cancer
Q38168518	Non-Viral Delivery and Therapeutic Application of Small Interfering RNAs
Q57156048	Non-coding RNA in drug resistance of hepatocellular carcinoma
Q35046517	Non-coding RNA networks underlying cognitive disorders across the lifespan
Q42808985	Non-coding RNA transcription: turning on neighbours
Q55223809	Non-coding RNA: It's Not Junk.
Q21129493	Non-coding RNA: what is functional and what is junk?
Q37139278	Non-coding RNAs and cancer
Q39107969	Non-coding RNAs and neuroprotection after acute CNS injuries.
Q86128834	Non-coding RNAs as biomarkers for metastatic prostate cancer
Q37591537	Non-coding RNAs as direct and indirect modulators of epigenetic regulation
Q38189361	Non-coding RNAs as epigenetic regulator of glioma stem-like cell differentiation
Q38051212	Non-coding RNAs in Alzheimer's disease
Q37009459	Non-coding RNAs in DNA damage and repair
Q47148827	Non-coding RNAs in Mesenchymal Stem Cell-Derived Extracellular Vesicles: Deciphering Regulatory Roles in Stem Cell Potency, Inflammatory Resolve, and Tissue Regeneration.
Q29618039	Non-coding RNAs in human disease
Q26866521	Non-coding RNAs in lung cancer
Q37889135	Non-coding RNAs in schistosomes: an unexplored world
Q35881657	Non-coding RNAs: key regulators of mammalian transcription
Q28681260	Non-coding RNAs: multi-tasking molecules in the cell
Q27693295	Non-coding RNAs: the "dark matter" of cardiovascular pathophysiology.
Q38094558	Non-coding transcription at cis-regulatory elements: computational and experimental approaches.
Q37984180	Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases
Q33523633	Non-consensus GLI binding sites in Hedgehog target gene regulation
Q36963340	Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation
Q33328657	Non-random retention of protein-coding overlapping genes in Metazoa
Q56990781	Noncoding RNA
Q34014009	Noncoding RNA in development
Q41924654	Noncoding RNA in drug resistant sarcoma
Q26823718	Noncoding RNA in oncogenesis: a new era of identifying key players
Q36191826	Noncoding RNA in the transcriptional landscape of human neural progenitor cell differentiation
Q35016286	Noncoding RNA of glutamine synthetase I modulates antibiotic production in Streptomyces coelicolor A3(2).
Q31121214	Noncoding RNA: Current Deep Sequencing Data Analysis Approaches and Challenges
Q58883615	Noncoding RNA: The Major Output of Gene Expression
Q34093095	Noncoding RNAs and atherosclerosis
Q35794764	Noncoding RNAs and enhancers: complications of a long-distance relationship
Q34176890	Noncoding RNAs as novel biomarkers in prostate cancer
Q26864697	Noncoding RNAs in DNA repair and genome integrity
Q36935047	Noncoding RNAs in breast cancer
Q35724788	Noncoding RNAs in mental retardation
Q36797315	Noncoding RNAs involved in mammary gland development and tumorigenesis: there's a long way to go
Q35786869	Nonimmunoglobulin target loci of activation-induced cytidine deaminase (AID) share unique features with immunoglobulin genes
Q35930225	Normalization, bias correction, and peak calling for ChIP-seq
Q37678180	Novel RNA-based strategies for therapeutic gene silencing
Q38355827	Novel genes in cell cycle control and lipid metabolism with dynamically regulated binding sites for sterol regulatory element-binding protein 1 and RNA polymerase II in HepG2 cells detected by chromatin immunoprecipitation with microarray detection.
Q50724304	Novel human lncRNA-disease association inference based on lncRNA expression profiles.
Q37479011	Novel regulatory mechanisms for the CFTR gene.
Q36446199	Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq
Q58786413	Novel three‑lncRNA signature predicts survival in patients with pancreatic cancer
Q50782119	Novel transcripts and alternatively spliced genes are associated with early development in bovine embryos.
Q33434894	Novel transcripts discovered by mining genomic DNA from defined regions of bovine chromosome 6
Q33917400	Novel variants in the PRDX6 Gene and the risk of Acute Lung Injury following major trauma
Q52430782	NuRD and CAF-1-mediated silencing of the D4Z4 array is modulated by DUX4-induced MBD3L proteins.
Q34499614	Nuclear RNA sequencing of the mouse erythroid cell transcriptome
Q34047062	Nuclear accumulation of an uncapped RNA produced by Drosha cleavage of a transcript encoding miR-10b and HOXD4
Q26823935	Nuclear lncRNAs as epigenetic regulators-beyond skepticism
Q37029720	Nuclear organization and genome function
Q30432919	Nuclear scaffold attachment sites within ENCODE regions associate with actively transcribed genes
Q46815592	Nuclear stability and transcriptional directionality separate functionally distinct RNA species
Q38789498	Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription
Q37848613	Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control
Q42380373	OCT4 and SOX2 Work as Transcriptional Activators in Reprogramming Human Fibroblasts
Q37199965	ORChestrating the human DNA replication program
Q35608650	Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
Q36739541	Oct4 switches partnering from Sox2 to Sox17 to reinterpret the enhancer code and specify endoderm
Q33483785	OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity
Q38876119	Omics-based approaches to understand mechanosensitive endothelial biology and atherosclerosis
Q22066047	On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE
Q57012617	On the origins of drug polypharmacology
Q43031655	On the relation between promoter divergence and gene expression evolution
Q34926575	On the road to reading the RNA-interference code
Q45424372	On the utility of gene set methods in genomewide association studies of quantitative traits
Q39030346	On the value of intra-motif dependencies of human insulator protein CTCF.
Q28242612	Oncogene-induced Nrf2 transcription promotes ROS detoxification and tumorigenesis
Q89966947	Oncogenic Role of PVT1 and Therapeutic Implications
Q47289701	Oncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA.
Q38662822	One-carbon metabolism and epigenetics: understanding the specificity
Q47205270	Ontological function annotation of long non-coding RNAs through hierarchical multi-label classification
Q34027627	Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
Q39956231	Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells.
Q43234221	Organization and transcriptional output of a novel mRNA-like piRNA gene (mpiR) located on mouse chromosome 10.
Q37150680	Orientation, distance, regulation and function of neighbouring genes
Q35501295	Origin of cells and network information
Q28303276	Origin of primate orphan genes: a comparative genomics approach
Q36294687	Origins of magic: review of genetic and epigenetic effects
Q35368205	Our changing view of the genomic landscape of cancer
Q42133748	Out of darkness: long non-coding RNAs come of age.
Q37336665	Over-expression of the long non-coding RNA HOTTIP inhibits glioma cell growth by BRE.
Q33533679	Overexpression of Chromatin Assembly Factor-1/p60 helps to predict the prognosis of melanoma patients
Q33688617	Overexpression of lncRNA H19 enhances carcinogenesis and metastasis of gastric cancer
Q40257609	Overexpression of long non-coding RNA HOTAIR predicts a poor prognosis in patients with acute myeloid leukemia
Q45864331	Overexpression of long noncoding RNA HOTAIR predicts a poor prognosis in patients with cervical cancer
Q47130059	Overexpression of suppressive microRNAs, miR-30a and miR-200c are associated with improved survival of breast cancer patients
Q38796631	Overexpression of the non-coding SOX2OT variants 4 and 7 in lung tumors suggests an oncogenic role in lung cancer.
Q90115073	PAN RNA: transcriptional exhaust from a viral engine
Q28708968	PBOV1 is a human de novo gene with tumor-specific expression that is associated with a positive clinical outcome of cancer
Q34085622	PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer.
Q28752684	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
Q41933545	PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences
Q50689733	PIQ-ing into chromatin architecture.
Q34143718	PPARG: Gene Expression Regulation and Next-Generation Sequencing for Unsolved Issues
Q35198329	PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters
Q35337501	PVT1: a rising star among oncogenic long noncoding RNAs.
Q30443854	Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas
Q35651346	Pancreatic cancer patient survival correlates with DNA methylation of pancreas development genes
Q39869573	Panning for Long Noncoding RNAs.
Q36904639	Passive and active DNA methylation and the interplay with genetic variation in gene regulation
Q28749392	Patents in genomics and human genetics
Q37260423	Pathway analyses identify TGFBR2 as potential breast cancer susceptibility gene: results from a consortium study among Asians
Q47321673	Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D.
Q33512934	Patterns of DNA-sequence divergence between Drosophila miranda and D. pseudoobscura
Q33374403	Patterns of evolutionary constraints on genes in humans
Q33745661	Patterns of human gene expression variance show strong associations with signaling network hierarchy
Q37707044	Pax-5 is a potent regulator of E-cadherin and breast cancer malignant processes
Q34029345	PcG complexes set the stage for epigenetic inheritance of gene silencing in early S phase before replication
Q28305773	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
Q28386134	Pedigree based DNA sequencing pipeline for germline genomes of cancer families
Q28593550	Peg3 mutational effects on reproduction and placenta-specific gene families
Q31088337	Pentamers not found in the universal proteome can enhance antigen specific immune responses and adjuvant vaccines
Q33329089	Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes
Q36201219	Personal and population genomics of human regulatory variation
Q42856957	Personalized genomic medicine with a patchwork, partially owned genome
Q37253357	Perspective: a systems approach to diabetes research
Q34031075	Perspectives of Long Non-Coding RNAs in Cancer Diagnostics
Q98164639	Perspectives on ENCODE
Q39320650	Perspectives on Gene Regulatory Network Evolution
Q91928748	Pervasive and dynamic transcription initiation in Saccharomyces cerevisiae
Q42124676	Pervasive haplotypic variation in the spliceo-transcriptome of the human major histocompatibility complex
Q36225693	Pervasive initiation and 3'-end formation of poxvirus postreplicative RNAs
Q37634460	Pervasive transcription of a herpesvirus genome generates functionally important RNAs
Q35004344	Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications
Q21144890	Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs
Q37532571	Pharmacogenetics in heart failure: promises and challenges
Q37193203	Phenotypic and molecular evaluation of a chromosome 1q region with linkage and association to type 2 diabetes in humans.
Q34304234	Phosphorylated and sumoylation-deficient progesterone receptors drive proliferative gene signatures during breast cancer progression
Q45074343	Phylogenetic Analysis of the SNORD116 Locus
Q28750213	Phylogenomics of primates and their ancestral populations
Q28284481	Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
Q47722829	Physics-based all-atom modeling of RNA energetics and structure
Q34333439	Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite.
Q34784987	Pipit: visualizing functional impacts of structural variations
Q37979953	Plant small RNAs: biogenesis, mode of action and their roles in abiotic stresses
Q34134903	Polycomb group proteins: multi-faceted regulators of somatic stem cells and cancer
Q33450714	Polycomb mediated epigenetic silencing and replication timing at the INK4a/ARF locus during senescence
Q55359976	Polymorphism in lncRNA AC008392.1 and its interaction with smoking on the risk of lung cancer in a Chinese population.
Q90566828	Polymorphism of simple sequence repeats may quantitatively regulate gene transcription
Q92383178	Polymorphisms in the PVT1 Gene and Susceptibility to the Lung Cancer in a Chinese Northeast Population: a Case-control Study
Q33577888	Polymorphisms in the hepatic lipase gene affect plasma HDL-cholesterol levels in a Turkish population
Q35001618	Population differentiation as an indicator of recent positive selection in humans: an empirical evaluation
Q29614905	Population genomics of human gene expression
Q39388698	Positional requirements for the stimulation of mRNA nuclear export by ALREX-promoting elements
Q51401747	Positive selection of the TRIM family regulatory region in primate genomes.
Q35034950	Possible formation of mitochondrial-RNA containing chimeric or trimeric RNA implies a post-transcriptional and post-splicing mechanism for RNA fusion
Q37286495	Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs
Q38214041	Post-transcriptional regulation of gene expression in innate immunity.
Q45019065	Posttranscriptional destabilization of the liver-specific long noncoding RNA HULC by the IGF2 mRNA-binding protein 1 (IGF2BP1).
Q41451057	Potent transcriptional interference by pausing of RNA polymerases over a downstream promoter
Q64105160	Potential Implications of Long Noncoding RNAs in Autoimmune Diseases
Q59809159	Potential clinical application of lncRNAs in non-small cell lung cancer
Q37869778	Potential in vivo roles of nucleic acid triple-helices
Q40257510	Potential prognostic long non-coding RNA identification and their validation in predicting survival of patients with multiple myeloma
Q40248157	Potentially functional variants in lncRNAs are associated with breast cancer risk in a Chinese population.
Q28476072	Pre-clinical drug prioritization via prognosis-guided genetic interaction networks
Q64113482	Precision prevention: A focused response to shifting paradigms in healthcare
Q21133752	Predicting cell types and genetic variations contributing to disease by combining GWAS and epigenetic data
Q37528854	Predicting enhancer transcription and activity from chromatin modifications
Q37319384	Predicting functional regulatory polymorphisms
Q35961138	Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA
Q47322605	Predicting nucleosome binding motif set and analyzing their distributions around functional sites of human genes
Q37448909	Predicting potentially functional SNPs in drug-response genes.
Q42137507	Predicting promoter activities of primary human DNA sequences
Q42762204	Predicting site-specific human selective pressure using evolutionary signatures
Q34196685	Predicting the lethal phenotype of the knockout mouse by integrating comprehensive genomic data
Q33330187	Prediction and analysis of nucleosome exclusion regions in the human genome
Q35145101	Prediction and experimental characterization of nsSNPs altering human PDZ-binding motifs
Q37629422	Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome
Q36641279	Prediction for human transcription start site using diversity measure with quadratic discriminant
Q34065439	Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data
Q38123046	Prediction of RNA binding proteins comes of age from low resolution to high resolution
Q34075724	Prediction of transposable element derived enhancers using chromatin modification profiles
Q57227082	Predictions of protein-RNA interactions
Q36093899	Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks
Q33691378	Preferential re-replication of Drosophila heterochromatin in the absence of geminin
Q28512630	Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation
Q35824956	Premature transcript termination, trans-splicing and DNA repair: a vicious path to cancer.
Q34096366	Principles and challenges of genomewide DNA methylation analysis
Q35887461	Principles for the post-GWAS functional characterization of cancer risk loci
Q30385682	Principles of metadata organization at the ENCODE data coordination center.
Q33579255	Principles of microRNA involvement in human cancers
Q31001497	Prioritizing Clinically Relevant Copy Number Variation from Genetic Interactions and Gene Function Data
Q99613440	Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD
Q33560243	ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses
Q42646740	ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
Q33482616	Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite
Q34211331	ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search.
Q30530777	Probing the Xenopus laevis inner ear transcriptome for biological function
Q41882384	Probing the phenomics of noncoding RNA.
Q47126031	Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008.
Q88695654	Profiling of transcription factor binding events by chromatin immunoprecipitation sequencing (ChIP-seq)
Q37732334	Profiling post-transcriptionally networked mRNA subsets using RIP-Chip and RIP-Seq
Q36711259	Progesterone induction of the 11beta-hydroxysteroid dehydrogenase type 2 promoter in breast cancer cells involves coordinated recruitment of STAT5A and progesterone receptor to a distal enhancer and polymerase tracking
Q89449691	Prognostic and clinicopathological significance of SNHG6 in human cancers: a meta-analysis
Q39158460	Prognostic relevance of miRNA-155 methylation in anaplastic glioma
Q46533547	Prognostic value of lncRNAs in lung carcinoma: a meta-analysis
Q35320744	Prognostic value of long non-coding RNA HOTAIR in various cancers
Q35740498	Prognostic value of long non-coding RNA MALAT1 in cancer patients
Q28601645	Progress in methods for rare variant association
Q24673598	Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions
Q94458493	Promoter DNA Hypermethylation and Paradoxical Gene Activation
Q35133922	Promoter Targeting RNAs: Unexpected Contributors to the Control of HIV-1 Transcription
Q36333684	Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
Q37389046	Protein promiscuity and its implications for biotechnology
Q44357084	Protein-mRNA interactome capture: cartography of the mRNP landscape
Q34172476	Proteogenomics to discover the full coding content of genomes: a computational perspective
Q34110561	Proteome changes driven by phosphorus deficiency and recovery in the brown tide-forming alga Aureococcus anophagefferens
Q53671909	Proteomics of Colwellia psychrerythraea at subzero temperatures - a life with limited movement, flexible membranes and vital DNA repair.
Q29617248	Proteomics. Tissue-based map of the human proteome
Q35807613	Protooncogene Ski cooperates with the chromatin-remodeling factor Satb2 in specifying callosal neurons.
Q33710018	Pseudogene PHBP1 promotes esophageal squamous cell carcinoma proliferation by increasing its cognate gene PHB expression
Q35048014	Pseudogene-derived lncRNAs: emerging regulators of gene expression
Q39639920	Pseudogene-mediated posttranscriptional silencing of HMGA1 can result in insulin resistance and type 2 diabetes.
Q44588850	Pseudogene: lessons from PCR bias, identification and resurrection.
Q34395392	Pseudogenes as weaknesses of ACTB (Actb) and GAPDH (Gapdh) used as reference genes in reverse transcription and polymerase chain reactions
Q39275455	Pseudogenes in gastric cancer pathogenesis: a review article
Q22065739	Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution
Q21284197	Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes
Q42115496	Putting epigenome comparison into practice
Q37255737	Puzzles, promises and a cure for ageing
Q40115079	Quantification of gene-specific methylation of DNMT3B and MTHFR using sequenom EpiTYPER®.
Q33680989	Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials
Q36163445	Quantitative assessment of chromatin immunoprecipitation grade antibodies directed against histone modifications reveals patterns of co-occurring marks on histone protein molecules
Q28477071	Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development
Q42036842	Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation
Q28834147	Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?
Q37087936	Quiet as a mouse: dissecting the molecular and genetic basis of hearing
Q24649838	R-Coffee: a method for multiple alignment of non-coding RNA
Q34144424	R-SAP: a multi-threading computational pipeline for the characterization of high-throughput RNA-sequencing data
Q33917421	RAG: an update to the RNA-As-Graphs resource
Q33380402	REST regulates distinct transcriptional networks in embryonic and neural stem cells
Q34633894	RFECS: a random-forest based algorithm for enhancer identification from chromatin state
Q38320440	RIP-chip enrichment analysis
Q36783636	RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments
Q42413406	RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model
Q39222032	RNA Bioinformatics for Precision Medicine
Q28602964	RNA Sequencing and Analysis
Q36260364	RNA biomarkers to facilitate the identification of aggressive prostate cancer
Q35224362	RNA degradome--its biogenesis and functions
Q27316422	RNA editome in rhesus macaque shaped by purifying selection
Q24321777	RNA exosome depletion reveals transcription upstream of active human promoters
Q37921468	RNA helicases and remodeling proteins
Q27010649	RNA interference and its role in cancer therapy
Q36557972	RNA landscape of evolution for optimal exon and intron discrimination
Q50510043	RNA lights up.
Q36739436	RNA polymerase II stalling: loading at the start prepares genes for a sprint
Q37997897	RNA polymerase II transcription on the fast lane
Q35941286	RNA polymerase: the most specific damage recognition protein in cellular responses to DNA damage?
Q35867012	RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening
Q36782437	RNA sequencing of cancer reveals novel splicing alterations
Q29619605	RNA sequencing: advances, challenges and opportunities
Q35667587	RNA splicing control: yet another gene regulatory role for long nuclear noncoding RNAs
Q37851804	RNA templating the epigenome: long noncoding RNAs as molecular scaffolds
Q28301544	RNA turnover and chromatin-dependent gene silencing
Q37908127	RNA-Mediated Epigenetic Programming of Genome Rearrangements
Q93190399	RNA-Seq Data-Mining Allows the Discovery of Two Long Non-Coding RNA Biomarkers of Viral Infection in Humans
Q36105769	RNA-Seq defines novel genes, RNA processing patterns and enhancer maps for the early stages of nephrogenesis: Hox supergenes
Q34711458	RNA-Seq reveals novel transcriptional reorganization in human alcoholic brain.
Q37399680	RNA-mediated pathogenesis in fragile X-associated disorders
Q24655562	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
Q41209881	RNABP COGEST: a resource for investigating functional RNAs
Q34545026	RNAP-II molecules participate in the anchoring of the ORC to rDNA replication origins
Q21284196	RNAalifold: improved consensus structure prediction for RNA alignments
Q33831548	RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.
Q42005374	RNAstrand: reading direction of structured RNAs in multiple sequence alignments
Q33530813	RNPomics: defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles
Q49604116	RNase H2-Dependent Polymerase Chain Reaction and Elimination of Confounders in Sample Collection, Storage, and Analysis Strengthen Evidence That microRNAs in Bovine Milk Are Bioavailable in Humans.
Q64094199	RREB1-induced upregulation of the lncRNA AGAP2-AS1 regulates the proliferation and migration of pancreatic cancer partly through suppressing ANKRD1 and ANGPTL4
Q64230280	Rapid Generation of Long Noncoding RNA Knockout Mice Using CRISPR/Cas9 Technology
Q33499905	Rapid high-throughput analysis of DNaseI hypersensitive sites using a modified Multiplex Ligation-dependent Probe Amplification approach
Q52839620	Rapidly evolving human promoter regions.
Q33979528	Rare and common regulatory variation in population-scale sequenced human genomes
Q28239018	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits
Q36490704	Rare variant discovery and calling by sequencing pooled samples with overlaps
Q28607995	Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
Q35838447	ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites.
Q33891684	Reading and language disorders: the importance of both quantity and quality.
Q37590503	Reassessing domain architecture evolution of metazoan proteins: the contribution of different evolutionary mechanisms
Q43206621	Reassessing the abundance of H3K9me2 chromatin domains in embryonic stem cells
Q38116806	Recent advances in Parkinson’s disease genetics.
Q60938093	Recent advances in functional genome analysis
Q38209316	Recent advances in the involvement of long non-coding RNAs in neural stem cell biology and brain pathophysiology
Q58781647	Recent advances in understanding the role of FOXO3
Q22065774	Recent de novo origin of human protein-coding genes
Q37096187	Recent updates on genetics: teaching old dogmas new tricks
Q37082974	Reciprocal regulation of long noncoding RNAs THBS4‑003 and THBS4 control migration and invasion in prostate cancer cell lines
Q38701309	Recognition of long-range enhancer-promoter interactions by adding genomic signatures of segmented regulatory regions
Q37883698	Reconstructing regulatory network transitions
Q39694028	Redefining the genetics of murine gammaherpesvirus 68 via transcriptome-based annotation
Q34529600	Redistribution of H3K4me2 on neural tissue specific genes during mouse brain development
Q37619269	Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array
Q37403328	Reengineering translational science: the time is right
Q34010252	Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling
Q52836988	Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes.
Q34335413	Regulation and function of the peg3 imprinted domain
Q31082683	Regulation of DNA replication timing on human chromosome by a cell-type specific DNA binding protein SATB1
Q47110807	Regulation of Human Breast Cancer by the Long Non-Coding RNA H19.
Q38177727	Regulation of ISWI chromatin remodelling activity
Q42270757	Regulation of MEIS1 by distal enhancer elements in acute leukemia.
Q41614319	Regulation of Noncoding Transcriptome in Developing Photoreceptors by Rod Differentiation Factor NRL.
Q38287444	Regulation of Peripheral Myelination through Transcriptional Buffering of Egr2 by an Antisense Long Non-coding RNA.
Q27349211	Regulation of Ubx expression by epigenetic enhancer silencing in response to Ubx levels and genetic variation
Q26999239	Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms
Q37158599	Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts
Q34271240	Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements
Q33371977	Regulation of expression of two LY-6 family genes by intron retention and transcription induced chimerism
Q38819269	Regulation of hematopoiesis and immune responses by long non-coding RNAs
Q33497905	Regulation of heterochromatin assembly on unpaired chromosomes during Caenorhabditis elegans meiosis by components of a small RNA-mediated pathway
Q36382068	Regulation of mammalian cell differentiation by long non-coding RNAs
Q37676486	Regulation of metabolism by long, non-coding RNAs
Q102388781	Regulation of microRNAs in high-fat diet induced hyperlipidemic hamsters
Q34892814	Regulation of neural macroRNAs by the transcriptional repressor REST.
Q37399818	Regulation of non-coding RNA networks in the nervous system--what's the REST of the story?
Q33428537	Regulation of p110delta PI 3-kinase gene expression
Q37922621	Regulation of target gene expression by the vitamin D receptor - an update on mechanisms
Q47271381	Regulation of the cohesin-loading factor NIPBL: Role of the lncRNA NIPBL-AS1 and identification of a distal enhancer element
Q34846003	Regulation of transcription by long noncoding RNAs
Q50307998	Regulatory BC1 RNA in cognitive control.
Q35346163	Regulatory elements required for the activation and repression of the protocadherin-alpha gene cluster
Q36677764	Regulatory mechanisms of long noncoding RNAs in vertebrate central nervous system development and function
Q34779364	Regulatory modules function in a non-autonomous manner to control transcription of the mbp gene.
Q28066784	Regulatory non-coding RNA: new instruments in the orchestration of cell death
Q37398596	Regulatory noncoding RNAs at Hox loci
Q60690261	Regulatory variants: from detection to predicting impact
Q37087605	Regulatory variation and evolution: implications for disease
Q36062037	Regulatory variation in a TBX5 enhancer leads to isolated congenital heart disease.
Q37995121	Regulatory variations in the era of next-generation sequencing: implications for clinical molecular diagnostics
Q37301923	Relapse-related long non-coding RNA signature to improve prognosis prediction of lung adenocarcinoma
Q33494742	Relationship between estrogen receptor alpha location and gene induction reveals the importance of downstream sites and cofactors
Q33796083	Relatively frequent switching of transcription start sites during cerebellar development.
Q35011079	Removal of covalent heterogeneity reveals simple folding behavior for P4-P6 RNA.
Q57059979	Renal compartment-specific genetic variation analyses identify new pathways in chronic kidney disease
Q35340115	Repeat-associated non-AUG translation and its impact in neurodegenerative disease
Q33530082	Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast
Q34229543	Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines
Q39582800	Replication-associated mutational asymmetry in the human genome
Q33392400	ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data
Q39900607	Reprogramming of the non-coding transcriptome during brain development
Q35640065	Resolving the variable genome and epigenome in human disease.
Q21563539	Response to “The Reality of Pervasive Transcription”
Q41491255	Responses of rat and mouse primary microglia to pro- and anti-inflammatory stimuli: molecular profiles, K+ channels and migration
Q33586314	Restricted transgene expression in the brain with cell-type specific neuronal promoters
Q21144306	Resurrection of DNA function in vivo from an extinct genome
Q34582221	Retinal transcriptome profiling at transcription start sites: a cap analysis of gene expression early after axonal injury.
Q31157515	Retrieving Chromatin Patterns from Deep Sequencing Data Using Correlation Functions.
Q35260206	Retroviral integration site selection.
Q36067801	Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis.
Q50147074	Revealing long-range interconnected hubs in human chromatin interaction data using graph theory.
Q35930303	Revealing mammalian evolutionary relationships by comparative analysis of gene clusters
Q24657564	Revealing the architecture of gene regulation: the promise of eQTL studies
Q34088536	Revealing the missing expressed genes beyond the human reference genome by RNA-Seq
Q33754717	Reverse engineering the yeast RNR1 transcriptional control system
Q94545338	Review: Long non-coding RNA in livestock
Q21145734	Revisiting an old riddle: what determines genetic diversity levels within species?
Q41334509	Revisiting the Saccharomyces cerevisiae predicted ORFeome
Q39526299	Rho-actin signaling to the MRTF coactivators dominates the immediate transcriptional response to serum in fibroblasts
Q37130406	Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins
Q36918106	Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs
Q42804032	Ripples from neighbouring transcription.
Q42414383	Role of H3K27 methylation in the regulation of lncRNA expression
Q59129598	Role of Long Noncoding RNA 799 in the Metastasis of Cervical Cancer through Upregulation of TBL1XR1 Expression
Q89879065	Role of Non-Coding RNAs in the Development of Targeted Therapy and Immunotherapy Approaches for Chronic Lymphocytic Leukemia
Q33908130	Role of conserved non-coding DNA elements in the Foxp3 gene in regulatory T-cell fate
Q37069217	Role of histone modifications in defining chromatin structure and function
Q92671574	Role of lncRNAs in aging and age-related diseases
Q38951145	Role of long non-coding RNAs in the determination of β-cell identity
Q37981785	Role of noncoding RNAs in trinucleotide repeat neurodegenerative disorders
Q38203736	Role of the lncRNA-p53 regulatory network in cancer
Q36276986	Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer
Q99630218	Roles of long non-coding RNAs in the hallmarks of glioma
Q26765422	Roles, Functions, and Mechanisms of Long Non-coding RNAs in Cancer
Q42775550	Rule-based integration of RNA-Seq analyses tools for identification of novel transcripts
Q36271066	SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers
Q36408631	SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets
Q35246317	SAMNetWeb: identifying condition-specific networks linking signaling and transcription
Q36434930	SBR-Blood: systems biology repository for hematopoietic cells.
Q35221220	SCAN database: facilitating integrative analyses of cytosine modification and expression QTL.
Q22065677	SEARCHING FOR FUNCTIONAL GENETIC VARIANTS IN NON-CODING DNA
Q33657332	SICTIN: Rapid footprinting of massively parallel sequencing data
Q30711934	SIOMICS: a novel approach for systematic identification of motifs in ChIP-seq data
Q90078487	SKF-LDA: Similarity Kernel Fusion for Predicting lncRNA-Disease Association
Q28308175	SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer
Q36276855	SNP discovery, expression and cis-regulatory variation in the UGT2B genes
Q33551006	SNP-RFLPing 2: an updated and integrated PCR-RFLP tool for SNP genotyping
Q33500365	SNP@Evolution: a hierarchical database of positive selection on the human genome
Q30670690	STAR: an integrated solution to management and visualization of sequencing data
Q33969838	STEME: efficient EM to find motifs in large data sets
Q34156329	SVA retrotransposons: Evolution and genetic instability
Q34188360	SVA: software for annotating and visualizing sequenced human genomes
Q37710898	SWIM: a computational tool to unveiling crucial nodes in complex biological networks
Q39948595	Screening reveals conserved and nonconserved transcriptional regulatory elements including an E3/E4 allele-dependent APOE coding region enhancer
Q33407814	Searching for bidirectional promoters in Arabidopsis thaliana
Q37559492	Searching genetic risk factors for schizophrenia and bipolar disorder: learn from the past and back to the future
Q41097710	Seeking a roadmap toward neuroepigenetics
Q26746052	Segment-specific regulation of epididymal gene expression
Q34856098	Selective constraint, background selection, and mutation accumulation variability within and between human populations
Q33567546	Semantic integration of data on transcriptional regulation
Q46506127	Separate proteolipid protein/DM20 enhancers serve different lineages and stages of development
Q35764271	Seq-ing improved gene expression estimates from microarrays using machine learning.
Q24647100	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
Q33940927	Sequence features that drive human promoter function and tissue specificity
Q21263161	Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples
Q37836418	Sequencing transcriptomes in toto.
Q39348159	Sequential Monte Carlo multiple testing
Q36144905	Shape-based alignment of genomic landscapes in multi-scale resolution
Q34028303	Shaping the Genome with Non-Coding RNAs
Q28648442	Sharing data between LSDBs and central repositories
Q37280676	Shifts in replication timing actively affect histone acetylation during nucleosome reassembly
Q41829985	Short read fragment assembly of bacterial genomes
Q34589938	Short stories on zebrafish long noncoding RNAs
Q34175322	Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome
Q33360974	SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences.
Q24651949	Signals of recent positive selection in a worldwide sample of human populations
Q35842509	Significant expansion of the REST/NRSF cistrome in human versus mouse embryonic stem cells: potential implications for neural development
Q27324428	Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-Seq
Q33336867	Simultaneous gene expression profiling in human macrophages infected with Leishmania major parasites using SAGE
Q33543401	Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana
Q26999350	Single molecule fluorescence approaches shed light on intracellular RNAs
Q35266388	Single-stranded noncoding RNAs mediate local epigenetic alterations at gene promoters in rat cell lines.
Q33521376	Skittle: a 2-dimensional genome visualization tool
Q42727360	Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs
Q37738391	Small RNA-mediated gene regulation in neurodevelopmental disorders
Q34727835	Small RNAs derived from structural non-coding RNAs
Q36490015	Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder
Q37346566	Small nucleolar RNAs in cancer
Q37134121	Small regulatory RNAs in neurodevelopmental disorders
Q24653997	Small silencing RNAs: an expanding universe
Q33942048	Social and ethical implications of genomics, race, ethnicity, and health inequities.
Q93019204	Solid pseudopapillary neoplasms of the pancreas are dependent on the Wnt pathway
Q27000781	Solving nucleic acid structures by molecular replacement: examples from group II intron studies
Q33899196	Spatiotemporal expression profiling of long intervening noncoding RNAs in Caenorhabditis elegans
Q40443581	Spatiotemporal-specific lncRNAs in the brain, colon, liver and lung of macaque during development
Q34415309	Species-specific alternative splicing leads to unique expression of sno-lncRNAs
Q36276913	Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.
Q22065859	Species-specific transcription in mice carrying human chromosome 21
Q39949853	Specific tumour-associated methylation in normal human term placenta and first-trimester cytotrophoblasts.
Q42650602	Spliceosome-mediated decay (SMD) regulates expression of nonintronic genes in budding yeast.
Q58454182	Splicing in the RNA World
Q93177519	Splicing of long non-coding RNAs primarily depends on polypyrimidine tract and 5' splice-site sequences due to weak interactions with SR proteins
Q56267120	Split-inducing indels in phylogenomic analysis
Q35840712	Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
Q37799723	Statistical analysis strategies for association studies involving rare variants
Q31150882	Statistical challenges in analyzing methylation and long-range chromosomal interaction data
Q30536635	Statistical metrics for quality assessment of high-density tiling array data
Q34726829	Steady progress and recent breakthroughs in the accuracy of automated genome annotation
Q28282295	Stem cell transcriptome profiling via massive-scale mRNA sequencing
Q35200153	Steroid hormone modulation of RET through two estrogen responsive enhancers in breast cancer
Q33558324	Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum
Q38908694	Strategies for immunohistochemical protein localization using antibodies: What did we learn from neurotransmitter transporters in glial cells and neurons
Q37855857	Strategies for the design of RNA-binding small molecules
Q33921205	Structural and functional differences in the long non-coding RNA hotair in mouse and human
Q26775139	Structure Prediction: New Insights into Decrypting Long Noncoding RNAs
Q37824453	Structure determination of genomic domains by satisfaction of spatial restraints
Q28654828	Structured RNAs and synteny regions in the pig genome
Q24673501	Structured RNAs in the ENCODE selected regions of the human genome
Q37812407	Structures of ribonucleoprotein particle modification enzymes.
Q34025914	Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development
Q42002759	Studying chromosome-wide transcriptional networks: new insights into disease?
Q34474372	SuRFing the genomics wave: an R package for prioritising SNPs by functionality
Q33335707	Submitting antibodies to binding arbitration
Q35557717	Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content
Q57058475	Subtype-specific associations between breast cancer risk polymorphisms and the survival of early-stage breast cancer
Q35788922	Suppression of progenitor differentiation requires the long noncoding RNA ANCR.
Q33684210	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study
Q28396388	Sustained proliferation in cancer: Mechanisms and novel therapeutic targets
Q37408736	Swimming upstream: identifying proteomic signals that drive transcriptional changes using the interactome and multiple "-omics" datasets
Q36961798	Synergy of homocysteine, microRNA, and epigenetics: a novel therapeutic approach for stroke
Q38679815	Synthetic biology: applying biological circuits beyond novel therapies
Q37024604	Synthetic tetracycline-controllable shRNA targeting long non-coding RNA HOXD-AS1 inhibits the progression of bladder cancer
Q60476610	Systematic Mendelian randomization framework elucidates hundreds of CpG sites which may mediate the influence of genetic variants on disease
Q64119152	Systematic analyses of regulatory variants in DNase I hypersensitive sites identified two novel lung cancer susceptibility loci
Q92577493	Systematic analysis of lncRNA and microRNA dynamic features reveals diagnostic and prognostic biomarkers of myocardial infarction
Q36673434	Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome
Q35051466	Systematic classification of non-coding RNAs by epigenomic similarity
Q21560932	Systematic clustering of transcription start site landscapes
Q30846586	Systematic discovery of cofactor motifs from ChIP-seq data by SIOMICS.
Q34174445	Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
Q36354907	Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control.
Q40125902	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
Q33498715	Systematic identification and characterization of chicken (Gallus gallus) ncRNAs
Q35160816	Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development
Q35791594	Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
Q34475758	Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome
Q33999313	Systematic targeted integration to study Albumin gene control elements
Q37707041	Systemically identifying and prioritizing risk lncRNAs through integration of pan-cancer phenotype associations
Q85020125	Systems biology and medicine: a new take on an old paradigm
Q37630764	Systems biology from a yeast omics perspective
Q27012769	Systems genetics for drug target discovery
Q64065615	TAD fusion score: discovery and ranking the contribution of deletions to genome structure
Q37543719	TALEN-mediated single-base-pair editing identification of an intergenic mutation upstream of BUB1B as causative of PCS (MVA) syndrome.
Q57691689	TE composition of human long noncoding RNAs and their expression patterns in human tissues
Q35064485	TE-array--a high throughput tool to study transposon transcription
Q50914554	TERRA RNA Antagonizes ATRX and Protects Telomeres.
Q37449229	TGF-β1 Induces Polypyrimidine Tract-Binding Protein to Alter Fibroblasts Proliferation and Fibronectin Deposition in Keloid
Q35571086	TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles
Q41835652	TREMOR--a tool for retrieving transcriptional modules by incorporating motif covariance.
Q37221794	Tackling the epigenome in the pluripotent stem cells
Q37800010	Tackling the epigenome: challenges and opportunities for collaboration
Q43042640	Tae Hoon Kim: knows his boundaries. Interview by Ruth Williams
Q90038222	Tales from topographic oceans: topologically associated domains and cancer
Q28505707	Target gene analysis by microarrays and chromatin immunoprecipitation identifies HEY proteins as highly redundant bHLH repressors
Q42604503	Target gene expression levels and competition between transfected and endogenous microRNAs are strong confounding factors in microRNA high-throughput experiments
Q37009455	Targeted RNA sequencing reveals the deep complexity of the human transcriptome
Q28239651	Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
Q24653591	Targeted chromosomal deletions in human cells using zinc finger nucleases
Q36177393	Targeted discovery of novel human exons by comparative genomics
Q38584755	Targeting MicroRNAs in Prevention and Treatment of Neurodegenerative Disorders.
Q38132274	Targeting VDAC-bound hexokinase II: a promising approach for concomitant anti-cancer therapy
Q35236465	Targeting histone methyltransferase EZH2 as cancer treatment
Q37260573	Telomeric RNAs mark sex chromosomes in stem cells.
Q37603332	Temporal regulation of DNA replication in mammalian cells.
Q90375521	Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post-genome era
Q33856993	Testicular postgenomics: targeting the regulation of spermatogenesis
Q39500024	Testing the coding potential of conserved short genomic sequences
Q60534640	The Advantages of Noncriminal Genetic Databases in Identifying Missing Persons and Human Remains
Q47136325	The Antioxidant Cofactor Alpha-Lipoic Acid May Control Endogenous Formaldehyde Metabolism in Mammals
Q35088043	The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression
Q24673673	The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci
Q38203849	The ENCODE project and perspectives on pathways
Q38088156	The ENCODE project: implications for psychiatric genetics
Q42626682	The Einstein Center for Epigenomics: studying the role of epigenomic dysregulation in human disease
Q35673679	The Emerging Functions of Long Noncoding RNA in Immune Cells: Autoimmune Diseases
Q47109257	The Encyclopedia of DNA elements (ENCODE): data portal update
Q40134575	The Environmental Polymorphisms Registry: a DNA resource to study genetic susceptibility loci
Q28315740	The Eukaryotic Genome as an RNA Machine
Q52348414	The Ever-Evolving Concept of the Gene: The Use of RNA/Protein Experimental Techniques to Understand Genome Functions.
Q39209522	The Evolving Definition of the Term "Gene".
Q37208716	The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
Q24608592	The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
Q37729422	The Genomic Impact of DNA CpG Methylation on Gene Expression; Relationships in Prostate Cancer
Q28598086	The Global Genome Biodiversity Network (GGBN) Data Standard specification
Q26746703	The Impact of External Factors on the Epigenome: In Utero and over Lifetime
Q38792930	The Inflammatory Response in Psoriasis: a Comprehensive Review
Q37419194	The Lnc RNA SPRY4-IT1 Modulates Trophoblast Cell Invasion and Migration by Affecting the Epithelial-Mesenchymal Transition
Q21131257	The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter"
Q58197130	The Luc2 gene enhances reliability of bicistronic assays
Q57471115	The MHC in the Era of Next-Generation Sequencing: Implications for Bridging Structure with Function
Q91698020	The MS-lincRNA landscape reveals a novel lincRNA BCLIN25 that contributes to tumorigenesis by upregulating ERBB2 expression via epigenetic modification and RNA-RNA interactions in breast cancer
Q33808204	The Mouse Tumor Biology Database (MTB): a central electronic resource for locating and integrating mouse tumor pathology data.
Q64264464	The NCATS BioPlanet - An Integrated Platform for Exploring the Universe of Cellular Signaling Pathways for Toxicology, Systems Biology, and Chemical Genomics
Q29619856	The NIH Roadmap Epigenomics Mapping Consortium
Q34300879	The NIH Roadmap Epigenomics Program data resource
Q38945239	The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia
Q36747940	The Pediatric Cancer Genome Project
Q88936916	The Physical and Biochemical Properties of the Extracellular Matrix Regulate Cell Fate
Q39424835	The Promoter and Multiple Enhancers of the pou4f3 Gene Regulate Expression in Inner Ear Hair Cells
Q36067676	The QTN program and the alleles that matter for evolution: all that's gold does not glitter
Q34079393	The RNA-centred view of the synapse: non-coding RNAs and synaptic plasticity
Q38756391	The Replication of Frataxin Gene Is Assured by Activation of Dormant Origins in the Presence of a GAA-Repeat Expansion.
Q52966734	The Role of DNA Methylation in Cancer.
Q38956012	The Role of MicroRNA and LncRNA-MicroRNA Interactions in Regulating Ischemic Heart Disease.
Q28681812	The Sm complex is required for the processing of non-coding RNAs by the exosome
Q28754888	The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution
Q58788745	The State of Long Non-Coding RNA Biology
Q34400749	The TFIIB tip domain couples transcription initiation to events involved in RNA processing
Q37418494	The TMSB4 Pseudogene LncRNA Functions as a Competing Endogenous RNA to Promote Cartilage Degradation in Human Osteoarthritis.
Q34349554	The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding
Q57306437	The UCSC Genome Browser
Q57306438	The UCSC Genome Browser
Q29614575	The UCSC Genome Browser Database: 2008 update
Q28273417	The UCSC genome browser and associated tools
Q54956943	The UCSC genome browser: what every molecular biologist should know.
Q35739881	The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma
Q34390458	The Vertebrate Genome Annotation browser 10 years on
Q39772682	The accumulation of gene regulation through time
Q42532360	The activatory long non-coding RNA DBE-T reveals the epigenetic etiology of facioscapulohumeral muscular dystrophy
Q34135204	The adaptive significance of unproductive alternative splicing in primates.
Q50346311	The association between HOTAIR polymorphisms and cancer susceptibility: an updated systemic review and meta-analysis.
Q58763904	The association of polymorphisms in lncRNA- with hepatocellular cancer risk and prognosis
Q34699867	The baboon kidney transcriptome: analysis of transcript sequence, splice variants, and abundance
Q34420537	The birth and development of the DNA theory of inheritance: sixty years since the discovery of the structure of DNA.
Q38915010	The bright side of dark matter: lncRNAs in cancer
Q28512635	The cardiac transcription network modulated by Gata4, Mef2a, Nkx2.5, Srf, histone modifications, and microRNAs
Q27499446	The case for cloud computing in genome informatics
Q22065246	The case for junk DNA
Q37873983	The central role of RNA in human development and cognition
Q28655771	The chick embryo as an expanding experimental model for cancer and cardiovascular research
Q36225648	The chromatin fingerprint of gene enhancer elements
Q28714218	The chromatin insulator CTCF and the emergence of metazoan diversity
Q33776217	The colorectal cancer disease-specific transcriptome may facilitate the discovery of more biologically and clinically relevant information
Q33505160	The completion of the Mammalian Gene Collection (MGC).
Q89514430	The comprehensive detection of miRNA, lncRNA, and circRNA in regulation of mouse melanocyte and skin development
Q24655027	The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
Q36168485	The conservation and signatures of lincRNAs in Marek's disease of chicken.
Q37149250	The cycle of genome-directed medicine
Q36554624	The cystic fibrosis gene: a molecular genetic perspective
Q38119536	The dark matter rises: the expanding world of regulatory RNAs.
Q39499573	The developmental transcriptome atlas of the biofuel crop Camelina sativa
Q29617262	The developmental transcriptome of Drosophila melanogaster
Q37718645	The dynamic architectural and epigenetic nuclear landscape: developing the genomic almanac of biology and disease.
Q37946259	The dynorphin/κ-opioid receptor system and its role in psychiatric disorders
Q30430707	The effect of the intra-S-phase checkpoint on origins of replication in human cells
Q27024237	The emergence of lncRNAs in cancer biology
Q38221025	The emergence of proteome-wide technologies: systematic analysis of proteins comes of age.
Q34712198	The emerging genetic architecture of type 2 diabetes
Q40065180	The emerging molecular biology toolbox for the study of long noncoding RNA biology
Q36886962	The emerging role of epigenetics in stroke: II. RNA regulatory circuitry
Q37681034	The emerging roles of eRNAs in transcriptional regulatory networks.
Q34939997	The endothelial transcription factor ERG promotes vascular stability and growth through Wnt/β-catenin signaling
Q38052450	The epigenome and its role in diabetes
Q35803336	The epigenome in early vertebrate development.
Q33306113	The ets-related transcription factor GABP directs bidirectional transcription
Q28654827	The evolution of comparative genomics
Q42730189	The evolution of gene regulation, the RNA universe, and the vexed questions of artefact and noise
Q33575696	The evolving discipline of molecular epidemiology of cancer
Q36799924	The expanding genomic landscape of autism: discovering the 'forest' beyond the 'trees'
Q38328034	The expanding role of epigenetics.
Q38058682	The expanding scope of DNA sequencing
Q34169022	The expression and activity of β-catenin in the thalamus and its projections to the cerebral cortex in the mouse embryo.
Q37707519	The expression level of small non-coding RNAs derived from the first exon of protein-coding genes is predictive of cancer status.
Q21198722	The extent of functionality in the human genome
Q39443034	The forkhead transcription factor FOXK2 promotes AP-1-mediated transcriptional regulation
Q35886478	The function of introns
Q37229183	The functional repertoires of metazoan genomes
Q34995156	The functional role of long non-coding RNA in human carcinomas
Q38256144	The functional role of long non-coding RNAs and epigenetics
Q33969611	The future of genetics in psychology and psychiatry: microarrays, genome-wide association, and non-coding RNA
Q38050689	The genetic and epigenetic basis of type 2 diabetes and obesity
Q37023933	The genome browser at UCSC for locating genes, and much more!
Q37587078	The genome in three dimensions: a new frontier in human brain research
Q35651163	The genomic binding sites of a noncoding RNA.
Q24617949	The genomic complexity of primary human prostate cancer
Q35614830	The genomics of micronutrient requirements
Q36391951	The hallmarks of cancer: a long non-coding RNA point of view.
Q38262691	The haplo-spliceo-transcriptome: common variations in alternative splicing in the human population
Q34415194	The hidden genetics of epilepsy-a clinically important new paradigm
Q34380167	The human IGF1R IRES likely operates through a Shine-Dalgarno-like interaction with the G961 loop (E-site) of the 18S rRNA and is kinetically modulated by a naturally polymorphic polyU loop
Q39233244	The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage
Q28728363	The human transcriptome: an unfinished story
Q37205801	The impact of genomics in understanding human melanoma progression and metastasis
Q38038868	The impact of intronic single nucleotide polymorphisms and ethnic diversity for studies on the obesity gene FTO.
Q33332585	The impact of recombination on nucleotide substitutions in the human genome
Q24613934	The importance of identifying alternative splicing in vertebrate genome annotation
Q64282374	The inherited variations of a p53-responsive enhancer in 13q12.12 confer lung cancer risk by attenuating TNFRSF19 expression
Q21092478	The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
Q49667633	The interaction of lncRNA EZR-AS1 with SMYD3 maintains overexpression of EZR in ESCC cells.
Q24610233	The interplay between transcription factors and microRNAs in genome-scale regulatory networks
Q31129939	The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation.
Q47624410	The involvement of lncRNAs in the development and progression of pancreatic cancer
Q24673723	The landscape of histone modifications across 1% of the human genome in five human cell lines
Q37035424	The loci of evolution: how predictable is genetic evolution?
Q34413066	The long arm of long noncoding RNAs: roles as sensors regulating gene transcriptional programs
Q28392415	The long non-coding RNA ANRIL promotes proliferation and cell cycle progression and inhibits apoptosis and senescence in epithelial ovarian cancer
Q58767859	The long non-coding RNA FLJ46906 binds to the transcription factors NF-κB and AP-1 and regulates expression of aging-associated genes
Q35011288	The long non-coding RNA HOTAIR indicates a poor prognosis and promotes metastasis in non-small cell lung cancer
Q51751763	The long non-coding RNA maternally expressed gene 3 activates p53 and is downregulated in esophageal squamous cell cancer.
Q21284149	The long noncoding RNA RNCR2 directs mouse retinal cell specification
Q21203074	The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity
Q24605850	The long noncoding RNA Vax2os1 controls the cell cycle progression of photoreceptor progenitors in the mouse retina
Q29615403	The long-range interaction landscape of gene promoters
Q34722569	The majority of primate-specific regulatory sequences are derived from transposable elements
Q21245321	The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA
Q35903450	The many faces of long noncoding RNAs
Q38680908	The miR-23a~27a~24-2 microRNA cluster buffers transcription and signaling pathways during hematopoiesis
Q37589599	The missing story behind Genome Wide Association Studies: single nucleotide polymorphisms in gene deserts have a story to tell
Q28740529	The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details
Q37828326	The mononuclear phagocyte system of the pig as a model for understanding human innate immunity and disease
Q39564377	The mouse RANKL gene locus is defined by a broad pattern of histone H4 acetylation and regulated through distinct distal enhancers
Q28244127	The mouse ascending: perspectives for human-disease models
Q30580509	The mutational landscape of chromatin regulatory factors across 4,623 tumor samples
Q37983037	The mysterious RAMP proteins and their roles in small RNA-based immunity
Q24617186	The neuronal transporter gene SLC6A15 confers risk to major depression
Q24681659	The new mutation theory of phenotypic evolution
Q39551053	The non-coding oncogene: a case of missing DNA evidence?
Q38116760	The non-coding road towards cardiac regeneration.
Q37705696	The non-coding transcriptome as a dynamic regulator of cancer metastasis
Q38337093	The noncoding human genome and the future of personalised medicine
Q36478075	The novel long non-coding RNA CRG regulates Drosophila locomotor behavior
Q35223510	The origins, evolution, and functional potential of alternative splicing in vertebrates
Q34470242	The parasite Trichomonas vaginalis expresses thousands of pseudogenes and long non-coding RNAs independently from functional neighbouring genes
Q28652315	The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function
Q50199930	The pharmacoepigenomics informatics pipeline defines a pathway of novel and known warfarin pharmacogenomics variants.
Q37589131	The plasticity of the mammalian transcriptome
Q33781137	The prevalence and regulation of antisense transcripts in Schizosaccharomyces pombe.
Q51874928	The principle of recursive genome function.
Q89310970	The prognostic value of HOTAIR for predicting long-term prognosis of patients with gastrointestinal cancers
Q41809234	The promise and limitations of population exomics for human evolution studies
Q34639391	The properties of genome conformation and spatial gene interaction and regulation networks of normal and malignant human cell types
Q33346907	The puzzle of RNAs that target gene promoters
Q36939296	The random versus fragile breakage models of chromosome evolution: a matter of resolution
Q33963677	The reality of pervasive transcription
Q39039006	The recurrent architecture of tumour initiation, progression and drug sensitivity
Q97419158	The regulatory landscape of early maize inflorescence development
Q49645738	The regulatory network analysis of long noncoding RNAs in human colorectal cancer.
Q24630512	The relationship of 5HTT (SLC6A4) methylation and genotype on mRNA expression and liability to major depression and alcohol dependence in subjects from the Iowa Adoption Studies
Q22121998	The rise of regulatory RNA
Q35623147	The road from next-generation sequencing to personalized medicine
Q37931926	The role of CTCF in coordinating the expression of single gene loci.
Q24632745	The role of GC-biased gene conversion in shaping the fastest evolving regions of the human genome
Q35557755	The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
Q38239862	The role of chromatin dynamics in immune cell development
Q53789333	The role of epigenetics and long noncoding RNA MIAT in neuroendocrine prostate cancer.
Q28748800	The role of genetics in the etiology of schizophrenia
Q34279114	The role of histone acetylation in memory formation and cognitive impairments
Q35550745	The role of long non-coding RNAs in genome formatting and expression
Q34079400	The role of long non-coding RNAs in neurodevelopment, brain function and neurological disease
Q37784878	The role of microRNAs in drug addiction: a big lesson from tiny molecules
Q27015892	The role of noncoding RNA in hepatocellular carcinoma
Q38235964	The role of noncoding RNA in thyroid cancer
Q38143696	The role of protein conformational switches in pharmacology: its implications in metabolic reprogramming and protein evolution
Q30662716	The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling
Q28080857	The short and long of noncoding sequences in the control of vascular cell phenotypes
Q90237396	The small peptide world in long noncoding RNAs
Q33659365	The social brain meets the reactive genome: neuroscience, epigenetics and the new social biology
Q42039702	The spatial and temporal organization of origin firing during the S-phase of fission yeast
Q35528415	The state of genome-wide association studies in pulmonary disease: a new perspective
Q37088939	The success of the genome-wide association approach: a brief story of a long struggle
Q33458084	The tangled bank of amino acids
Q60044861	The temporal expression patterns of brain transcriptome during chicken development and ageing
Q34368052	The three-dimensional architecture of Hox cluster silencing
Q34664947	The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules
Q34976601	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.
Q21145306	The vast, conserved mammalian lincRNome
Q38059885	The versatile landscape of haematopoiesis: are leukaemia stem cells as versatile?
Q34713677	The vertebrate genome annotation (Vega) database
Q35054161	The zebrafish transcriptome during early development
Q42324523	Thematic minireview series on results from the ENCODE Project: Integrative global analyses of regulatory regions in the human genome
Q36837290	Theria-specific homeodomain and cis-regulatory element evolution of the Dlx3-4 bigene cluster in 12 different mammalian species
Q28481731	Thermodynamic state ensemble models of cis-regulation
Q33700661	Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
Q49511487	Thinking BIG rheumatology: how to make functional genomics data work for you.
Q21131258	Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing
Q37083251	Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
Q33825780	Tiling array data analysis: a multiscale approach using wavelets
Q28385221	Tilting at quixotic trait loci (QTL): an evolutionary perspective on genetic causation
Q35551534	Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing
Q37883129	To understand the whole, you must know the parts: unraveling the roles of protein-DNA interactions in genome regulation
Q33575525	Touring Ensembl: a practical guide to genome browsing
Q34654666	Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification
Q36201193	Toward mapping the biology of the genome
Q37533481	Towards a genome-wide reconstruction of cis-regulatory networks in the human genome
Q36633176	Towards a molecular dynamics consensus view of B-DNA flexibility
Q28088603	Tracks through the genome to physiological events
Q36859245	Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation
Q34192913	Transcribed dark matter: meaning or myth?
Q42694136	Transcript catalogs of human chromosome 21 and orthologous chimpanzee and mouse regions
Q51823749	Transcription beyond borders has downstream consequences.
Q42137522	Transcription control by long non-coding RNAs
Q37603622	Transcription dynamics
Q34473592	Transcription factor Oct1 is a somatic and cancer stem cell determinant
Q42139343	Transcription factor and chromatin features predict genes associated with eQTLs
Q34637346	Transcription factor binding and modified histones in human bidirectional promoters
Q34312883	Transcription factor co-localization patterns affect human cell type-specific gene expression
Q42155239	Transcription factor effector domains
Q21563555	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
Q36804846	Transcription induces strand-specific mutations at the 5' end of human genes
Q36961272	Transcription of foreign DNA in Escherichia coli
Q38253795	Transcription of inflammatory genes: long noncoding RNA and beyond
Q40026914	Transcription of laminin gamma1 chain gene in rat mesangial cells: constitutive and inducible RNA polymerase II recruitment and chromatin states
Q36684732	Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication
Q36846342	Transcription termination between polo and snap, two closely spaced tandem genes of D. melanogaster.
Q60305309	Transcriptional and Epigenetic Regulation of Effector and Memory CD8 T Cell Differentiation
Q34245251	Transcriptional and epigenetic control of T helper cell specification: molecular mechanisms underlying commitment and plasticity.
Q37287384	Transcriptional and post-transcriptional profile of human chromosome 21.
Q34203877	Transcriptional attenuation in colon carcinoma cells in response to butyrate
Q21563542	Transcriptional dysregulation in NIPBL and cohesin mutant human cells
Q39935609	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.
Q41901525	Transcriptional enhancers in development and disease
Q34261528	Transcriptional enhancers in protein-coding exons of vertebrate developmental genes
Q28278927	Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs
Q34503742	Transcriptional interference by RNA polymerase pausing and dislodgement of transcription factors.
Q36076247	Transcriptional interference networks coordinate the expression of functionally related genes clustered in the same genomic loci
Q36166237	Transcriptional networks driving enhancer function in the CFTR gene
Q24622379	Transcriptional regulation by STAT1 and STAT2 in the interferon JAK-STAT pathway
Q34181426	Transcriptional regulation of N-acetylglutamate synthase.
Q37149528	Transcriptional regulation of human small nuclear RNA genes
Q38869591	Transcriptional regulation of long-term potentiation
Q50027000	Transcriptional-Readthrough RNAs Reflect the Phenomenon of "A Gene Contains Gene(s)" or "Gene(s) within a Gene" in the Human Genome, and Thus Are Not Chimeric RNAs.
Q64079551	Transcriptome Analysis Suggests the Roles of Long Intergenic Non-coding RNAs in the Growth Performance of Weaned Piglets
Q38041993	Transcriptome alterations induced by cigarette smoke
Q37393534	Transcriptome analysis by strand-specific sequencing of complementary DNA.
Q38727601	Transcriptome and long noncoding RNA sequencing of three extracellular vesicle subtypes released from the human colon cancer LIM1863 cell line.
Q33373144	Transcriptome content and dynamics at single-nucleotide resolution
Q36227014	Transcriptome networks in the mouse retina: An exon level BXD RI database
Q37293358	Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing.
Q35154249	Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
Q36238632	Transcriptome-Wide Discovery of PASRs (Promoter-Associated Small RNAs) and TASRs (Terminus-Associated Small RNAs) in Arabidopsis thaliana
Q62749448	Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder
Q64084990	Transcriptomic Analysis of Potential "lncRNA-mRNA" Interactions in Liver of the Marine Teleost Fed Diets With Different DHA/EPA Ratios
Q38362855	Transcriptomics exposes the uniqueness of parasitic plants.
Q39821664	Transcriptomics in type 2 diabetes: Bridging the gap between genotype and phenotype
Q38589466	Translating the Untranslated Region.
Q45103037	Transposable elements have rewired the core regulatory network of human embryonic stem cells
Q35140050	Trapping DNA replication origins from the human genome
Q34253269	Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data
Q39699927	Tumor metabolism: hnRNP proteins get in on the act
Q24608886	TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences
Q36009235	Two RNAs or DNAs May Artificially Fuse Together at a Short Homologous Sequence (SHS) during Reverse Transcription or Polymerase Chain Reactions, and Thus Reporting an SHS-Containing Chimeric RNA Requires Extra Caution
Q51533387	UCA1 overexpression predicts clinical outcome of patients with ovarian cancer receiving adjuvant chemotherapy.
Q34793131	UCSC genome browser: deep support for molecular biomedical research
Q30490388	Ultra-Structure database design methodology for managing systems biology data and analyses.
Q33371806	Ultraconserved coding regions outside the homeobox of mammalian Hox genes
Q33325887	Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics
Q33961117	Uncovering the complexity of transcriptomes with RNA-Seq.
Q47588490	Uncovering the transcriptional circuitry in skeletal muscle regeneration
Q38021453	Understanding cardiovascular disease: a journey through the genome (and what we found there).
Q38212123	Understanding the Dynamics of Gene Regulatory Systems; Characterisation and Clinical Relevance of cis-Regulatory Polymorphisms
Q38737901	Understanding the Pathogenicity of Noncoding Mismatch Repair Gene Promoter Variants in Lynch Syndrome
Q92481311	Unique trophoblast chromatin environment mediated by the PcG protein SFMBT2
Q33853256	Unlocking the potential of genomic technologies for wildlife forensics
Q33745487	Unlocking the secrets of the genome
Q36379459	Unraveling the genetics of autoimmunity
Q34411230	Unraveling the score of the enhancer symphony
Q35994590	Unravelling global genome organization by 3C-seq
Q37122090	Unravelling the hidden DNA structural/physical code provides novel insights on promoter location
Q89490386	Unveiling ncRNA regulatory axes in atherosclerosis progression
Q24646476	Upcoming challenges for multiple sequence alignment methods in the high-throughput era
Q64935824	Upregulation of gastric adenocarcinoma predictive long intergenic non-coding RNA promotes progression and predicts poor prognosis in perihilar cholangiocarcinoma.
Q43196446	Upregulation of long non-coding RNA HIF 1α-anti-sense 1 induced by transforming growth factor-β-mediated targeting of sirtuin 1 promotes osteoblastic differentiation of human bone marrow stromal cells
Q50224580	Upregulation of long noncoding RNA PVT1 predicts unfavorable prognosis in patients with clear cell renal cell carcinoma.
Q33339250	Uprobe 2008: an online resource for universal overgo hybridization-based probe retrieval and design
Q90402484	Urothelial carcinoma associated 1 promotes trophoblast invasion by regulating MMP9
Q34390623	Use of allele-specific FAIRE to determine functional regulatory polymorphism using large-scale genotyping arrays
Q36201678	Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation
Q36996347	Using PCR to Target Misconceptions about Gene Expression
Q37568418	Using RNA inverse folding to identify IRES-like structural subdomains.
Q38384433	Using semantic web technologies to annotate and align microarray designs.
Q26865379	Using the ENCODE Resource for Functional Annotation of Genetic Variants
Q42436462	Using zebrafish transgenesis to test human genomic sequences for specific enhancer activity
Q34544940	Validating predicted biological effects of Alzheimer's disease associated SNPs using CSF biomarker levels
Q42765234	Variable evolutionary signatures at the heart of enhancers
Q90571093	Variants in oxidative stress-related genes affect the chemosensitivity through Nrf2-mediated signaling pathway in biliary tract cancer
Q28943328	Variants in several genomic regions associated with asperger disorder
Q37002460	Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls
Q37186731	Variation of the oxytocin/neurophysin I (OXT) gene in four human populations
Q47262831	Variations of Histone Modification Patterns: Contributions of Inter-plant Variability and Technical Factors.
Q53489250	Vesiculated Long Non-Coding RNAs: Offshore Packages Deciphering Trans-Regulation between Cells, Cancer Progression and Resistance to Therapies.
Q35434896	Vindel: a simple pipeline for checking indel redundancy
Q30316229	Viroids, infectious long non-coding RNAs with autonomous replication
Q34028869	Visualization and exploration of conserved regulatory modules using ReXSpecies 2
Q37701252	Visualizing genomes: techniques and challenges
Q45071253	Vitamin D Receptor Signaling and Cancer
Q33646923	Vitamin D and the RNA transcriptome: more than mRNA regulation
Q36071737	Vitamin D receptor and RXR in the post-genomic era.
Q36344273	Vitamin D receptor signaling mechanisms: integrated actions of a well-defined transcription factor
Q28728805	Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
Q30484140	WebGMAP: a web service for mapping and aligning cDNA sequences to genomes
Q33370393	WebScipio: an online tool for the determination of gene structures using protein sequences
Q28393055	What are genes "for" or where are traits "from"? What is the question?
Q51550396	What determines specific cell functions?
Q22065765	What does our genome encode?
Q22065769	What fraction of the human genome is functional?
Q34128497	What would you do if you could sequence everything?
Q48247374	When Long Noncoding RNAs Meet Genome Editing in Pluripotent Stem Cells.
Q37815869	When needles look like hay: how to find tissue-specific enhancers in model organism genomes
Q43564977	Whole genome duplication: challenges and considerations associated with sequence orthology assignment in Salmoninae
Q27496606	Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions
Q33783513	Whole transcriptome analysis: what are we still missing?
Q30362046	Whole-exome imputation of sequence variants identified two novel alleles associated with adult body height in African Americans.
Q24653972	Whole-genome cancer analysis as an approach to deeper understanding of tumour biology
Q36484273	Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
Q35006530	Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions
Q38006829	Whole-genome sequencing in personalized therapeutics
Q36910595	Whole-transcriptome analysis of UUO mouse model of renal fibrosis reveals new molecular players in kidney diseases
Q37630984	Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches.
Q35927954	Widely distributed noncoding purifying selection in the human genome
Q33784572	Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast
Q22065971	Widespread purifying selection on RNA structure in mammals
Q33481229	Word-based characterization of promoters involved in human DNA repair pathways
Q34272531	Workflows for microarray data processing in the Kepler environment
Q33734823	X chromosome-wide analyses of genomic DNA methylation states and gene expression in male and female neutrophils
Q42079085	X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.
Q22252318	XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease
Q90180450	Xist RNA in action: Past, present, and future
Q38061125	Year-in-Review of Lung Cancer
Q35686781	Yeast one-hybrid assays for gene-centered human gene regulatory network mapping.
Q33970447	ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions
Q36199585	Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo.
Q85075335	Zinc fingers hit off target
Q42017919	c-Myc regulates RNA splicing of the A-Raf kinase and its activation of the ERK pathway
Q33811689	cDNA library generation from ribonucleoprotein particles.
Q38615610	cncRNAs: Bi-functional RNAs with protein coding and non-coding functions
Q34520103	cnvHiTSeq: integrative models for high-resolution copy number variation detection and genotyping using population sequencing data.
Q35529685	dCaP: detecting differential binding events in multiple conditions and proteins
Q35075627	g:Profiler--a web server for functional interpretation of gene lists (2011 update).
Q38109304	iPOP goes the world: integrated personalized Omics profiling and the road toward improved health care
Q28513766	linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis
Q38348854	lincRNA HOTAIR as a novel promoter of cancer progression.
Q91606030	lncRNA CRNDE promotes the proliferation and metastasis by acting as sponge miR-539-5p to regulate POU2F1 expression in HCC
Q47556060	lncRNA Gene Signatures for Prediction of Breast Cancer Intrinsic Subtypes and Prognosis
Q61810431	lncRNA H19 promotes viability and epithelial-mesenchymal transition of lung adenocarcinoma cells by targeting miR-29b-3p and modifying STAT3
Q41191235	lncRNA HOTAIR Contributes to 5FU Resistance through Suppressing miR-218 and Activating NF-κB/TS Signaling in Colorectal Cancer
Q49708993	lncRNA in HNSCC: challenges and potential.
Q35253198	lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse
Q41225381	lncRNAs in development and disease: from functions to mechanisms
Q33881387	mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain
Q28588606	mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide
Q47162062	malERA: An updated research agenda for basic science and enabling technologies in malaria elimination and eradication
Q42585792	maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences
Q98568802	miR-1975 serves as an indicator of clinical severity upon influenza infection
Q26771724	miRNAs Regulation and Its Role as Biomarkers in Endometriosis
Q38088011	miRNAs and long noncoding RNAs as biomarkers in human diseases
Q93160611	microRNA-9 might be a novel protective factor for osteoarthritis patients
Q38472671	microRNAs in CNS disorders
Q28510581	mrhl RNA, a long noncoding RNA, negatively regulates Wnt signaling through its protein partner Ddx5/p68 in mouse spermatogonial cells
Q39621585	ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival
Q34137912	p16(INK4a) -mediated suppression of telomerase in normal and malignant human breast cells
Q37682360	p53 regulates the cardiac transcriptome.
Q37588543	pRb, a local chromatin organizer with global possibilities
Q28587251	ΔNp63 knockout mice reveal its indispensable role as a master regulator of epithelial development and differentiation
Q41727778	ΔNp63 regulates IL-33 and IL-31 signaling in atopic dermatitis

P6179	Dimensions Publication ID	1005913886
P356	DOI	10.1038/NATURE05874
P3181	OpenCitations bibliographic resource ID	214126
P932	PMC publication ID	2212820
P698	PubMed publication ID	17571346
P5875	ResearchGate publication ID	6266542

P50	author	David Haussler	Q92714
		Francis Collins	Q336658
		Julian Huppert	Q691216
		Eric Lander	Q970550
		Peter F. Stadler	Q2074784
		Adam C. Siepel	Q4678820
		Ewan Birney	Q4869199
		Elaine Mardis	Q5353251
		Elliott H. Margulies	Q5365658
		Eric D. Green	Q5386338
		George Weinstock	Q5546130
		Jim Kent	Q6196102
		Pawandeep Dhami	Q125295658
		Nathan D Trinklein	Q125301799
		Heike Fiegler	Q125315408
		Jennifer Hillman-Jackson	Q125697516
		John S. Mattick	Q6247207
		Jun Liu	Q6311502
		Kerstin Lindblad-Toh	Q6394763
		Mark Bender Gerstein	Q6766711
		Barbara E. Stranger	Q30347493
		Jakob Skou Pedersen	Q30348810
		James Taylor	Q30362443
		Robert Baertsch	Q30502938
		Nick Goldman	Q30503093
		Josep F. Abril	Q30503165
		Angie S. Hinrichs	Q30503184
		Eduardo Eyras	Q30503190
		Andrea Tanzer	Q30503315
		Peggy Farnham	Q30503476
		Peter J. Bickel	Q7174850
		Richard M. Myers	Q7327555
		Xavier Estivill i Pallejà	Q9096554
		Webb Miller	Q12061804
		Stefan Washietl	Q28359465
		Paul Flicek	Q28359506
		Albin Sandelin	Q28437655
		Núria López-Bigas	Q28737768
		Tina Graves	Q28914823
		Michael P. Snyder	Q28924918
		Erica Sodergren	Q28958360
		Michele Clamp	Q30089916
		Ian Dunham	Q30093275
		Kate R. Rosenbloom	Q19519708
		Roderic Guigó i Serra	Q19720095
		Lior Pachter	Q21823349
		James Gilbert	Q30504314
		Ivo L. Hofacker	Q30513870
		Thomas R. Gingeras	Q30517922
		Richard Sandstrom	Q30530478
		Donna Muzny	Q32652849
		Christine P Bird	Q33083629
		James Cuff	Q14945414
		Yoshihide Hayashizaki	Q15055173
		Stilianos Antonarakis	Q15429287
		Piero Carninci	Q15989751
		Tim Hubbard	Q15990056
		Gonçalo Abecasis	Q16001382
		Thomas D. Tullius	Q37390280
		Peter Newburger	Q37390349
		Donna Karolchik	Q38153419
		Damian Keefe	Q38153819
		Heather Trumbower	Q38154121
		Tim Massingham	Q38154128
		Galt Barber	Q38159064
		Julien Lagarde	Q38682055
		Robert Castelo	Q42551515
		Ankit Malhotra	Q57431318
		Michael R Kuehn	Q57561054
		Emmanouil Dermitzakis	Q59420022
		Shane Neph	Q114398372
		Michael O Dorschner	Q114398373
		Andrew Haydock	Q114398374
		Fidencio Neri	Q114398375
		Anthony Shafer	Q114398376
		Sujit Dike	Q114398377
		Manja Lindemeyer	Q114398378
		Caroline Manzano	Q114398379
		Charlotte N Henrichsen	Q114398380
		Ugrappa Nagalakshmi	Q114398381
		Ghia Euskirchen	Q114398382
		Huaiyang Jiang	Q114398383
		Maxim Koriabine	Q114398384
		Mikhail Nefedov	Q114398385
		Kazutoyo Osoegawa	Q114398386
		ENCODE Project Consortium	Q114398387
		George Asimenos	Q114425953
		Xiaobin Guan	Q114425954
		Jacquelyn R Idol	Q114425955
		Valerie V B Maduro	Q114425956
		Baishali Maskeri	Q114425957
		Robert W. Blakesley	Q114425958
		Chikatoshi Kai	Q114432065
		Claes Wadelius	Q114515819
		Mark S. Guyer	Q115165728
		Nigel Carter	Q115232417
		Robert M. Kuhn	Q115574247
		Rachel A. Harte	Q115574276
		Kristin Missal	Q117279092
		Sharon Squazzo	Q123476900
		Jane Rogers	Q124137730
		Eugene Davydov	Q125198103
		Tyler Alioto	Q37389576
		Alvaro Rada-Iglesias	Q37389652
		Jana Hertel	Q37389712
		Jörg Hackermüller	Q37389808
		Ian Holmes	Q37389869
		Jan Korbel	Q37389934
		Stefan Enroth	Q37389989
		Christoph Flamm	Q37390028
		David Vetrie	Q37390064
		Deyou Zheng	Q37390105
		Joel Rozowsky	Q37390171
		Sean Davis	Q37390205
		Baoli Zhu	Q60611170
		Akshay A Bhinge	Q61013901
		David Swarbreck	Q61797918
		John Stamatoyannopoulos	Q62565798
		Gregory E. Crawford	Q62565802
		Benedict Paten	Q62673564
		Hiram Clawson	Q62673866
		Richard A Gibbs	Q64856497
		Kim C Worley	Q64856498
		Michael Hawrylycz	Q64952147
		NISC Comparative Sequencing Program	Q65050486
		James C Mullikin	Q65054916
		Job Dekker	Q78284933
		Ann S Zweig	Q79473969
		Michael L Tress	Q79843025
		Matthew T Weirauch	Q87249360
		Shamil R Sunyaev	Q88000219
		Siew Woh Choo	Q88098546
		Pieter J de Jong	Q88885226
		Zhiping Weng	Q89205628
		Nancy F. Hansen	Q89506858
		Yijun Ruan	Q90016751
		Michael C. Zody	Q90424996
		Todd Richmond	Q91329733
		David A. Wheeler	Q91473919
		Fabio Pardi	Q96105721
		Gerard G Bouffard	Q97556040
		Colin N Dewey	Q99593383
		Kris A Wetterstrand	Q101051321
		Peter Good	Q101237610
		Sergey Nikolaev	Q101510083
		Jason D Lieb	Q109084133
		Vishwanath R Iyer	Q109084145
		Elise A Feingold	Q114294288
		Atif Shahab	Q114294290
		Richard K. Wilson	Q16193441
		Alfonso Valencia	Q16335154
		Deanna M. Church	Q18685663
		Ola Wallerman	Q35703735
		Anindya Dutta	Q37369581
		Adam Ameur	Q37373461
		Tae Hoon Kim	Q37386202
		Alexander W Bruce	Q37389356
		Matthew J. Oberley	Q37389393
		Anason Halees	Q37389430
		Sylvain Foissac	Q37389497
		Ari Löytynoja	Q37389536
		Juan I. Montoya-Burgos	Q25577819
		Serafim Batzoglou	Q25999511
		Ross Hardison	Q27063030
		Sante Gnerre	Q28321181
		Abel Ureta-Vidal	Q28322649
		Alexandre Reymond	Q28324092
		France Denoeud	Q28359221
		Catherine Ucla	Q28359309
		Jennifer Harrow	Q28359351
		Adam Frankish	Q28359379
		Carine Wyss	Q28359394
		Jorg Drenkow	Q28359419
		Jacqueline Chrast	Q28359463
P2093	author name string	Oliver M Dovey
		Kayla Smith
		K G Srinivasan
		Ingileif B Hallgrímsdóttir
		Jill Cheng
		Claudia Fried
		Mousheng Xu
		Abigail Woodroffe
		Peter Kraus
		Joel D Martin
		Paul G Giresi
		Nathan Day
		Christoph M Koch
		Patrick A Navas
		Mark C Bieda
		Jennifer C McDowell
		Charlie W H Lee
		Joanna C Fowler
		David Inman
		Evelyn Cheung
		Rhona Stuart
		Jeff Goldy
		Ericka M Johnson
		Hari Tammana
		Madhavan Ganesh
		Ulaş Karaöz
		Ivan Adzhubei
		M Geoff Rosenfeld
		Kyle J Munn
		Kirsten Lee
		Broad Institute
		Chiou Yu Choo
		Gayle K Clelland
		Jane M Lin
		Sarah Wilcox
		Children's Hospital Oakland Research Institute
		Gregory C Lefebvre
		Phillippe Couttet
		XiaoDong Zhao
		Antigone Dimas
		Archana Thakkapallayil
		Baylor College of Medicine Human Genome Sequencing Center
		Jaafar N S Haidar
		Laura A Liefer
		Leah Barrera
		Nate Heintzman
		Tristan T Frum
		Washington University Genome Sequencing Center
		Jun Kawai
		Shane C Dillon
		Todd M Lowe
		Bing Ren
		Chunxu Qu
		Keith D James
		Sara Van Calcar
		David B Jaffe
		Mark C Dickson
		Annie Yang
		Cordelia F Langford
		Gregory M Cooper
		Paul I W de Bakker
		Yuko Yoshinaga
		Jiaqian Wu
		Roland D Green
		Xueqing Zhang
		Zheng Lian
		Vinsensius B Vega
		Kun Wang
		Nan Jiang
		William S Noble
		Fei Yao
		Andrew D Kern
		Gary Hon
		Rosa Luna
		Kevin Struhl
		Peter J Sabo
		Man Yu
		Stephen Hartman
		Haiyan Huang
		Nicholas Matthews
		Jin Lian
		Sherman Weissman
		Ian Bell
		Zhengdong D Zhang
		Daryl J Thomas
		Olof Emanuelsson
		Yutao Fu
		Arend Sidow
		David C King
		Minmei Hou
		Ruth Taylor
		Taane G Clark
		Wing-Kin Sung
		Patrick Ng
		Hua Cao
		Eric A Stone
		Neerja Karnani
		Patrick J Boyle
		Nancy R Zhang
		Jean L Chang
		Chia-Lin Wei
		Hong Sain Ooi
		Kuo Ping Chiu
		Michael Seringhaus
		Edward A Sekinger
		Heather A Hirsch
		Philipp Kapranov
		Srinka Ghosh
		David A Nix
		Yong Yu
		Robert E Thurman
		Alice C Young
		Elizabeth R Rosenzweig
		Michael Brent
		Molly Weaver
		Zarmik Moqtaderi
		Robert Fulton
		Jonghwan Kim
		Alexander E Urban
		Robert M Andrews
		Shelley Force Aldred
		Christopher K Glass
		James B Brown
		Pamela J Thomas
		Brett E Johnson
		Sandeep Patel
		Lluis Armengol
		Simon Whelan
		Christopher M Taylor
		Xiaoling Zhang
		Morgan Park
		Hennady P Shulha
		Xiaoqin Xu
		Michael A Singer
		Peter D Ellis
		Stephen C J Parker
		Zhou Zhu
		Richard Humbert
		Nancy Holroyd
		Sara J Cooper
		Jason A Greenbaum
		Saurabh Asthana
		Jan Komorowski
P2860	cites work	Direct isolation and identification of promoters in the human genome	Q30350732
		Temporal profile of replication of human chromosomes	Q30436641
		Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas	Q30443854
		A computational approach for identifying pseudogenes in the ENCODE regions	Q28763301
		An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing	Q28769987
		LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA	Q28775786
		The implications of alternative splicing in the ENCODE protein complement	Q29048146
		The ENCODE (ENCyclopedia Of DNA Elements) Project	Q29547219
		Aligning multiple genomic sequences with the threaded blockset aligner	Q29547490
		Antisense transcription in the mammalian transcriptome	Q29547536
		Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF	Q29547783
		Global identification of human transcribed sequences with genome tiling arrays	Q29614335
		A global map of p53 transcription-factor binding sites in the human genome	Q29614400
		A high-resolution map of active promoters in the human genome	Q29614431
		Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions	Q29614512
		Distribution and intensity of constraint in mammalian genomic sequence	Q29614574
		Histone methyltransferase activity of a Drosophila Polycomb group repressor complex	Q29615394
		Genome-wide analysis of mammalian promoter architecture and evolution	Q29616717
		Vertebrate pseudogenes	Q29618328
		Widespread occurrence of antisense transcription in the human genome	Q29618539
		Initial sequencing and analysis of the human genome	Q21045365
		Highly conserved non-coding sequences are associated with vertebrate development	Q21092819
		Genome-wide associations of gene expression variation in humans	Q21145274
		GENCODE: producing a reference annotation for ENCODE	Q21184138
		EGASP: the human ENCODE Genome Annotation Assessment Project	Q21184139
		Functional evolution of a cis-regulatory module	Q21563626
		Transcriptional Regulatory Elements in the Human Genome	Q22065387
		Parallel construction of orthologous sequence-ready clone contig maps in multiple species	Q30842844
		Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome	Q31115631
		Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters	Q33258473
		DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states	Q33581012
		Identification and characterization of multi-species conserved sequences	Q33683429
		Subtree power analysis and species selection for comparative genomics	Q33841228
		The RNA polymerase II core promoter	Q33965089
		Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27.	Q33979536
		GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis	Q34015248
		Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover	Q34135129
		Spatial organization of gene expression: the active chromatin hub.	Q34230157
		MAVID: constrained ancestral alignment of multiple sequences	Q34310489
		Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome	Q34324178
		Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers	Q34344656
		Identification and functional analysis of human transcriptional promoters	Q34374098
		Gene regulation and large-scale chromatin organization in the nucleus	Q34498169
		Replication timing of the human genome	Q34543543
		TUF love for "junk" DNA.	Q34543624
		Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation	Q34556124
		An intermediate grade of finished genomic sequence suitable for comparative analyses	Q37600509
		Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome	Q38314358
		Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays	Q38319977
		Integrated pseudogene annotation for human chromosome 22: evidence for transcription	Q38326705
		PromoSer: improvements to the algorithm, visualization and accessibility	Q38449659
		High-throughput localization of functional elements by quantitative chromatin profiling	Q40443820
		Coordination of replication and transcription along a Drosophila chromosome.	Q41711507
		The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export	Q41829208
		Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE).	Q41977742
		Identification of higher-order functional domains in the human ENCODE regions	Q41981321
		Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing	Q44159316
		Reading signals on the nucleosome with a new nomenclature for modified histones	Q45258400
		Adaptive evolution of non-coding DNA in Drosophila	Q46601551
		Evolutionary dynamics of the enhancer region of even-skipped in Drosophila	Q48069590
		Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.	Q50725987
		Genome-scale profiling of histone H3.3 replacement patterns.	Q52660778
		Conserved noncoding sequences are selectively constrained and not mutation cold spots	Q57161686
		Structural details of an adenine tract that does not cause DNA to bend	Q59073800
		Pseudogenes: Are They “Junk” or Functional DNA?	Q22065389
		Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution	Q22065739
		Tandem chimerism as a means to increase protein complexity in the human genome	Q22065741
		Ultraconserved Elements in the Human Genome	Q22065813
		Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes	Q22065831
		The Sequence of the Human Genome	Q22065842
		A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells	Q22066257
		Structural variation in the human genome	Q22122017
		Genome sequence, comparative analysis and haplotype structure of the domestic dog	Q22122465
		Initial sequence of the chimpanzee genome and comparison with the human genome	Q22122468
		Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution	Q22122484
		Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype	Q22122487
		Finishing the euchromatic sequence of the human genome	Q22122488
		Genome sequence of the Brown Norway rat yields insights into mammalian evolution	Q22122498
		Initial sequencing and comparative analysis of the mouse genome	Q22122521
		Cloning and expression of human TAFII250: a TBP-associated factor implicated in cell-cycle regulation	Q24308057
		Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays	Q24530037
		A test of neutral molecular evolution based on nucleotide data	Q24532207
		Heritable gene silencing in lymphocytes delays chromatid resolution without affecting the timing of DNA replication	Q61640261
		How the structure of an adenine tract depends on sequence context: a new model for the structure of TnAn DNA sequences	Q72940381
		The timing of XIST replication: dominance of the domain	Q77760280
		Replication timing and transcriptional control: beyond cause and effect	Q34688494
		Genome-wide sequence and functional analysis of early replicating DNA in normal human fibroblasts	Q35225219
		Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment	Q35664024
		Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome	Q35840707
		Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions	Q35840712
		Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome	Q35840725
		Detection of DNA structural motifs in functional genomic elements.	Q35840738
		Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network	Q35965143
		Conserved non-genic sequences - an unexpected feature of mammalian genomes	Q36045183
		Trade-offs in detecting evolutionarily constrained sequence by comparative genomics	Q36241643
		A question of timing: emerging links between transcription and replication	Q36406917
		Epigenetic deregulation of imprinting in congenital diseases of aberrant growth	Q36449310
		Functional constraint and small insertions and deletions in the ENCODE regions of the human genome	Q36643264
		Replication program of active and inactive multigene families in mammalian cells	Q36788974
		Characterization of evolutionary rates and constraints in three Mammalian genomes	Q37322323
		Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes	Q24534193
		Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes	Q24561708
		DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays	Q24644477
		Genomic targets of the human c-Myc protein	Q24672480
		FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin	Q24673476
		Structured RNAs in the ENCODE selected regions of the human genome	Q24673501
		Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions	Q24673598
		The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci	Q24673673
		The landscape of histone modifications across 1% of the human genome in five human cell lines	Q24673723
		A haplotype map of the human genome	Q24679827
		A model of the statistical power of comparative genome sequence analysis	Q24792214
		Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability	Q24793813
		The transcriptional landscape of the mammalian genome	Q27861110
		Genome-wide location and function of DNA binding proteins	Q28131765
		Role of histone H3 lysine 27 methylation in Polycomb-group silencing	Q28131795
		Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome	Q28131828
		The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A	Q28207947
		Scanning Human Gene Deserts for Long-Range Enhancers	Q28210571
		Large-scale transcriptional activity in chromosomes 21 and 22	Q28216457
		Control of developmental regulators by Polycomb in human embryonic stem cells	Q28235841
		Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment	Q28241066
		Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution	Q28241731
		CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species	Q28242132
		Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs	Q28246401
		A genome-wide comparison of recent chimpanzee and human segmental duplications	Q28270097
		Adaptive protein evolution at the Adh locus in Drosophila	Q28302478
		Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies	Q28306149
P433	issue	7146
P407	language of work or name	English	Q1860
P921	main subject	human genome	Q720988
P1104	number of pages	18
P304	page(s)	799-816
P577	publication date	2007-06-01
P1433	published in	Nature	Q180445
P1476	title	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
P478	volume	447

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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