| review article | Q7318358 |
| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1024354176 |
| P356 | DOI | 10.1038/NRG2220 |
| P698 | PubMed publication ID | 18087260 |
| P5875 | ResearchGate publication ID | 5762039 |
| P2093 | author name string | Michael R Brent | |
| P2860 | cites work | GeneWise and Genomewise | Q21061201 |
| Automated generation of heuristics for biological sequence comparison | Q21061202 | ||
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project | Q21061203 | ||
| GENCODE: producing a reference annotation for ENCODE | Q21184138 | ||
| EGASP: the human ENCODE Genome Annotation Assessment Project | Q21184139 | ||
| What is a gene, post-ENCODE? History and updated definition | Q22065737 | ||
| Evolution of genes and genomes on the Drosophila phylogeny | Q22122220 | ||
| Sequencing and comparison of yeast species to identify genes and regulatory elements | Q22122502 | ||
| Initial sequencing and comparative analysis of the mouse genome | Q22122521 | ||
| The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC) | Q24307426 | ||
| Iterative gene prediction and pseudogene removal improves genome annotation | Q24546075 | ||
| A genome-wide survey of human pseudogenes | Q24561582 | ||
| JIGSAW: integration of multiple sources of evidence for gene prediction | Q42664140 | ||
| AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome | Q42939491 | ||
| Using multiple alignments to improve gene prediction. | Q51233052 | ||
| Integrating genomic homology into gene structure prediction. | Q52058300 | ||
| Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions | Q24673598 | ||
| BLAT—The BLAST-Like Alignment Tool | Q24682492 | ||
| Gene finding in the chicken genome | Q24816057 | ||
| Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources | Q25257211 | ||
| Prediction of complete gene structures in human genomic DNA | Q27860780 | ||
| Statistical analysis of the 5' untranslated region of human mRNA using "Oligo-Capped" cDNA libraries | Q28141348 | ||
| CONTRAfold: RNA secondary structure prediction without physics-based models | Q28254581 | ||
| CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes | Q29547486 | ||
| An overview of Ensembl | Q29615978 | ||
| Gene prediction with a hidden Markov model and a new intron submodel | Q29616754 | ||
| GMAP: a genomic mapping and alignment program for mRNA and EST sequences | Q29616836 | ||
| Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies | Q29617550 | ||
| Ab initio gene finding in Drosophila genomic DNA | Q29617909 | ||
| Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences | Q30588620 | ||
| Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method | Q30678343 | ||
| GAZE: a generic framework for the integration of gene-prediction data by dynamic programming | Q30719841 | ||
| Using ESTs to improve the accuracy of de novo gene prediction | Q33248721 | ||
| Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome | Q33269496 | ||
| Global discriminative learning for higher-accuracy computational gene prediction | Q33279158 | ||
| Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions | Q33736275 | ||
| Interpolated Markov models for eukaryotic gene finding. | Q33867218 | ||
| Large-scale analysis of pseudogenes in the human genome | Q33980016 | ||
| Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes | Q34329481 | ||
| Genome annotation past, present, and future: how to define an ORF at each locus | Q34563197 | ||
| What are DNA sequence motifs? | Q34566348 | ||
| Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map. | Q35023157 | ||
| Computational gene prediction using multiple sources of evidence | Q35125932 | ||
| Pairagon+N-SCAN_EST: a model-based gene annotation pipeline | Q35664031 | ||
| Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts | Q35664036 | ||
| Targeted discovery of novel human exons by comparative genomics | Q36177393 | ||
| How does eukaryotic gene prediction work? | Q36905465 | ||
| Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing | Q37322719 | ||
| Conrad: gene prediction using conditional random fields. | Q40184867 | ||
| GeneID in Drosophila | Q40414080 | ||
| Comparative gene prediction in human and mouse | Q40610407 | ||
| Gene structure conservation aids similarity based gene prediction | Q40695453 | ||
| Human–Mouse Gene Identification by Comparative Evidence Integration and Evolutionary Analysis | Q40829802 | ||
| Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure | Q40873359 | ||
| Creating a honey bee consensus gene set | Q42097101 | ||
| P433 | issue | 1 | |
| P921 | main subject | automation | Q184199 |
| genome annotation | Q19753316 | ||
| P304 | page(s) | 62-73 | |
| P577 | publication date | 2008-01-01 | |
| P1433 | published in | Nature Reviews Genetics | Q1071824 |
| P1476 | title | Steady progress and recent breakthroughs in the accuracy of automated genome annotation | |
| P478 | volume | 9 |
| Q33581050 | A full-length cDNA resource for the pea aphid, Acyrthosiphon pisum |
| Q33881114 | A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins |
| Q40548513 | A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs |
| Q33594385 | A quick guide to large-scale genomic data mining |
| Q54477053 | Annotation of microsporidian genomes using transcriptional signals. |
| Q35213595 | AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. |
| Q29619225 | Applications of next-generation sequencing technologies in functional genomics |
| Q28743183 | Approaches to Fungal Genome Annotation |
| Q36368724 | Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features |
| Q21184037 | Between a chicken and a grape: estimating the number of human genes |
| Q37320878 | Bioinformatic approaches to identifying orthologs and assessing evolutionary relationships. |
| Q24644138 | CC2D2A is mutated in Joubert syndrome and interacts with the ciliopathy-associated basal body protein CEP290 |
| Q38449120 | CHOgenome.org 2.0: Genome resources and website updates. |
| Q24645295 | Classifying coding DNA with nucleotide statistics |
| Q47254696 | Comparative Genome Annotation |
| Q33815667 | Considering transposable element diversification in de novo annotation approaches |
| Q34118167 | Controversies in modern evolutionary biology: the imperative for error detection and quality control |
| Q33786899 | De novo analysis of transcriptome dynamics in the migratory locust during the development of phase traits |
| Q34015219 | Deep sequencing-based transcriptome analysis of Plutella xylostella larvae parasitized by Diadegma semiclausum |
| Q34246164 | Detecting novel genes with sparse arrays |
| Q37020709 | Discovery and revision of Arabidopsis genes by proteogenomics |
| Q58631529 | Domain knowledge and data quality perceptions in genome curation work |
| Q36491671 | Dual use of peptide mass spectra: Protein atlas and genome annotation. |
| Q27490892 | Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes |
| Q39146471 | Finding Genes in Genome Sequence |
| Q42408692 | GFam: a platform for automatic annotation of gene families |
| Q34657673 | Genome and proteome annotation: organization, interpretation and integration |
| Q34087521 | Genome majority vote improves gene predictions |
| Q33364282 | Identification and correction of abnormal, incomplete and mispredicted proteins in public databases |
| Q41221996 | Identification of functional candidates amongst hypothetical proteins of Mycobacterium leprae Br4923, a causative agent of leprosy. |
| Q64241037 | Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry Development |
| Q37829699 | Less label, more free: approaches in label-free quantitative mass spectrometry. |
| Q38123746 | Lives that introns lead after splicing |
| Q33741943 | Machine learning and genome annotation: a match meant to be? |
| Q38045819 | New genes expressed in human brains: implications for annotating evolving genomes |
| Q31133823 | Next Generation Sequencing Data and Proteogenomics. |
| Q34285180 | Nuclear retention of unspliced pre-mRNAs by mutant DHX16/hPRP2, a spliceosomal DEAH-box protein |
| Q33870561 | OryzaPG-DB: rice proteome database based on shotgun proteogenomics |
| Q34254936 | Pattern analysis approach reveals restriction enzyme cutting abnormalities and other cDNA library construction artifacts using raw EST data |
| Q36057675 | Peanut (Arachis hypogaea) Expressed Sequence Tag Project: Progress and Application |
| Q35051859 | PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions |
| Q33358942 | Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing |
| Q42646740 | ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles |
| Q37083495 | Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe |
| Q38660073 | Proteogenomics approaches for studying cancer biology and their potential in the identification of acute myeloid leukemia biomarkers |
| Q34172476 | Proteogenomics to discover the full coding content of genomes: a computational perspective |
| Q37190570 | Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation |
| Q28649850 | Proteogenomics: concepts, applications and computational strategies |
| Q39275455 | Pseudogenes in gastric cancer pathogenesis: a review article |
| Q34065318 | RNA-Seq improves annotation of protein-coding genes in the cucumber genome. |
| Q33831548 | RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data. |
| Q89638490 | Re-recognition of pseudogenes: From molecular to clinical applications |
| Q30486080 | Revisiting the missing protein-coding gene catalog of the domestic dog |
| Q47770103 | SIBIS: a Bayesian model for inconsistent protein sequence estimation |
| Q38716994 | Similar Ratios of Introns to Intergenic Sequence across Animal Genomes |
| Q84230152 | Temporal analysis of xylose fermentation by Scheffersomyces stipitis using shotgun proteomics |
| Q35793424 | The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes. |
| Q37229183 | The functional repertoires of metazoan genomes |
| Q37825839 | The next-generation sequencing technology and application |
| Q36611523 | The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies |
| Q35970949 | TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes |
| Q28542518 | UPLC/Q-TOF MS-based metabolomics and qRT-PCR in enzyme gene screening with key role in triterpenoid saponin biosynthesis of Polygala tenuifolia |
| Q33631122 | Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome |
| Q30484140 | WebGMAP: a web service for mapping and aligning cDNA sequences to genomes |
| Q24655379 | mGene.web: a web service for accurate computational gene finding |
| Q42629117 | mGene: accurate SVM-based gene finding with an application to nematode genomes |
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