| scholarly article | Q13442814 |
| P2093 | author name string | Osamu Gotoh | |
| Hiroaki Iwata | |||
| P2860 | cites work | GeneWise and Genomewise | Q21061201 |
| Automated generation of heuristics for biological sequence comparison | Q21061202 | ||
| TopHat: discovering splice junctions with RNA-Seq | Q24655505 | ||
| Database resources of the National Center for Biotechnology Information | Q24683601 | ||
| Prediction of complete gene structures in human genomic DNA | Q27860780 | ||
| A genomic perspective on protein families | Q27860913 | ||
| Homology-based gene structure prediction: simplified matching algorithm using a translated codon (tron) and improved accuracy by allowing for long gaps. | Q52077108 | ||
| Optimal sequence alignment allowing for long gaps. | Q52111467 | ||
| EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA. | Q52258429 | ||
| Optimal spliced alignment of homologous cDNA to a genomic DNA template | Q73929226 | ||
| Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches | Q29615084 | ||
| GMAP: a genomic mapping and alignment program for mRNA and EST sequences | Q29616836 | ||
| A computer program for aligning a cDNA sequence with a genomic DNA sequence | Q29618232 | ||
| SPA: a probabilistic algorithm for spliced alignment | Q33242808 | ||
| PALMA: mRNA to genome alignments using large margin algorithms | Q33286233 | ||
| Homology search for genes | Q33291485 | ||
| Splign: algorithms for computing spliced alignments with identification of paralogs | Q33336883 | ||
| A computational analysis of sequence features involved in recognition of short introns | Q33944374 | ||
| Splicing double: insights from the second spliceosome | Q34285037 | ||
| Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project | Q34311043 | ||
| Issues in bioinformatics benchmarking: the case study of multiple sequence alignment | Q34368001 | ||
| Improved spliced alignment from an information theoretic approach | Q34464815 | ||
| Comparative analysis of information contents relevant to recognition of introns in many species | Q34550339 | ||
| A survey of sequence alignment algorithms for next-generation sequencing | Q34619507 | ||
| Steady progress and recent breakthroughs in the accuracy of automated genome annotation | Q34726829 | ||
| Comprehensive splice-site analysis using comparative genomics | Q35013128 | ||
| Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes | Q36259275 | ||
| A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence | Q36649623 | ||
| Sim4cc: a cross-species spliced alignment program | Q37235420 | ||
| Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner | Q37319689 | ||
| Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0. | Q37383953 | ||
| Gene recognition via spliced sequence alignment. | Q37384263 | ||
| Computational discovery of internal micro-exons | Q40829814 | ||
| genBlastG: using BLAST searches to build homologous gene models | Q44977279 | ||
| Direct mapping and alignment of protein sequences onto genomic sequence. | Q46015088 | ||
| Methods for comparing a DNA sequence with a protein sequence. | Q48057023 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial 3.0 Unported | Q18810331 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 20 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | e161 | |
| P577 | publication date | 2012-07-30 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features | |
| P478 | volume | 40 |
| Q64967964 | A chromosome-scale genome assembly of cucumber (Cucumis sativus L.). |
| Q33786308 | Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment |
| Q36333365 | Brain Transcriptome Sequencing of a Natural Model of Alzheimer's Disease |
| Q42598541 | Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation |
| Q47254696 | Comparative Genome Annotation |
| Q57936550 | Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation |
| Q92441853 | Dissection of Dynamic Transcriptome Landscape of Leaf, Bract, and Lupulin Gland in Hop (Humulus lupulus L.). |
| Q33761168 | Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions |
| Q42380155 | Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed |
| Q35532851 | European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation |
| Q54942029 | Evolution of genomic variation in the burrowing owl in response to recent colonization of urban areas. |
| Q36062844 | Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option |
| Q28828831 | Genome sequence of the olive tree, Olea europaea |
| Q57279772 | Genome-wide transcriptome profiling of transgenic hop (Humulus lupulus L.) constitutively overexpressing HlWRKY1 and HlWDR1 transcription factors |
| Q38725703 | Investigating the genomic basis of discrete phenotypes using a Pool-Seq-only approach: New insights into the genetics underlying colour variation in diverse taxa |
| Q88639235 | Minimap2: pairwise alignment for nucleotide sequences |
| Q64275982 | New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes |
| Q94546398 | Post-transcriptional regulation of several biological processes involved in latex production in Hevea brasiliensis |
| Q52659858 | Refined ab initio gene predictions of Heterorhabditis bacteriophora using RNA-seq. |
| Q35882407 | Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq |
| Q91964957 | Splice-Aware Multiple Sequence Alignment of Protein Isoforms |
| Q57104362 | The High-Quality Genome Sequence of the Oceanic Island Endemic Species Drosophila guanche Reveals Signals of Adaptive Evolution in Genes Related to Flight and Genome Stability |
| Q91387530 | The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis |
| Q41931625 | The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ringspot virus resistance locus. |
| Q46267436 | The first draft reference genome of the American mink (Neovison vison). |
| Q50211583 | The genomes of two Eutrema species provide insight into plant adaptation to high altitudes. |
| Q92001105 | The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor |
| Q90292460 | Whole-Genome Annotation with BRAKER |
Search more.