GFam: a platform for automatic annotation of gene families

scientific article published on 11 July 2012

GFam: a platform for automatic annotation of gene families is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/GKS631
P932PMC publication ID3479161
P698PubMed publication ID22790981
P5875ResearchGate publication ID229082006

P50authorEva HualaQ42408751
P2093author name stringAlberto Paccanaro
Tamás Nepusz
David Swarbreck
Rajkumar Sasidharan
P2860cites workThe predictive power of the CluSTr database.Q51971304
Circularly permuted proteins in the protein structure databaseQ21045390
The evolution of mammalian gene familiesQ21092262
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Identification of novel families and classification of the C2 domain superfamily elucidate the origin and evolution of membrane targeting activities in eukaryotesQ24623162
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology ConsortiumQ24644341
The Pfam protein families databaseQ24644670
PROSITE, a protein domain database for functional characterization and annotationQ24644916
InterPro: the integrative protein signature databaseQ24655685
SMART 6: recent updates and new developmentsQ24655795
The TIGRFAMs database of protein familiesQ24681677
Large scale hierarchical clustering of protein sequencesQ24798423
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final releaseQ24804698
InterProScan: protein domains identifierQ24812921
Spectral clustering of protein sequencesQ25256573
Basic local alignment search toolQ25938991
SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogenyQ26781958
SCOP: a structural classification of proteins database for the investigation of sequences and structuresQ27860689
A genomic perspective on protein familiesQ27860913
An efficient algorithm for large-scale detection of protein familiesQ28131838
Domain combinations in archaeal, eubacterial and eukaryotic proteomesQ28203959
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-ProtQ28296666
Domain insertionQ28299891
Analysis of compositionally biased regions in sequence databasesQ29614389
Prediction and analysis of coiled-coil structuresQ29614391
The universal protein resource (UniProt)Q29617074
Data growth and its impact on the SCOP database: new developmentsQ29619285
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editingQ30480876
Gene3D: merging structure and function for a Thousand genomesQ30882219
Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamilyQ31103507
The NYN domains: novel predicted RNAses with a PIN domain-like foldQ33264065
Characterization of paralogous protein families in riceQ33320353
Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thalianaQ33530936
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scaleQ33538869
FingerPRINTScan: intelligent searching of the PRINTS motif database.Q33892484
The Arabidopsis Information Resource (TAIR): gene structure and function annotation.Q34008043
PRINTS and its automatic supplement, prePRINTS.Q34169535
PIRSF: family classification system at the Protein Information ResourceQ34284552
Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangementsQ34482580
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolutionQ34585750
Steady progress and recent breakthroughs in the accuracy of automated genome annotationQ34726829
Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root developmentQ35208219
Automated protein function prediction--the genomic challengeQ36505962
Role of gene duplication in evolution.Q38730960
ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisonsQ39541659
A race through the maze of genomic evidenceQ39779636
Domain insertions in protein structuresQ42148596
ProClust: improved clustering of protein sequences with an extended graph-based approach.Q42685998
Protein fold irregularities that hinder sequence analysis.Q47835315
Exhaustive enumeration of protein domain familiesQ47961009
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P433issue19
P921main subjectautomationQ184199
P304page(s)e152
P577publication date2012-07-11
P1433published inNucleic Acids ResearchQ135122
P1476titleGFam: a platform for automatic annotation of gene families
P478volume40

Search more.