Principles of metadata organization at the ENCODE data coordination center.

scientific article

Principles of metadata organization at the ENCODE data coordination center. is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/biodb/HongSCDMSHGNHLR16
P356DOI10.1093/DATABASE/BAW001
P932PMC publication ID4792520
P698PubMed publication ID26980513
P5875ResearchGate publication ID298425313

P50authorAditi NarayananQ59760566
Venkat S MalladiQ30503319
Timothy R DreszerQ38155117
Esther T ChanQ47503077
Jason HiltonQ54311407
J. Michael CherryQ56955001
P2093author name stringEurie L Hong
Benjamin C Hitz
Greg R Roe
Jean M Davidson
Brian T Lee
Cricket A Sloan
J Seth Strattan
Idan Gabdank
Forrest Tanaka
Laurence D Rowe
Marcus Ho
Nikhil R Podduturi
P2860cites workIdentification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectQ21061203
Uberon, an integrative multi-species anatomy ontologyQ21184014
An ontology for cell typesQ21184168
An integrated encyclopedia of DNA elements in the human genomeQ22122150
NCBI GEO: archive for functional genomics data sets--updateQ24595691
Modeling sample variables with an Experimental Factor OntologyQ24596875
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TABQ24673513
Ontology application and use at the ENCODE DCCQ26851445
Minimum information about a microarray experiment (MIAME)-toward standards for microarray dataQ27860569
Toward interoperable bioscience dataQ28090939
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortiaQ28274448
Modeling biomedical experimental processes with OBIQ28287823
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013Q28710191
The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental detailsQ28740529
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community levelQ28749402
Integrative analysis of 111 reference human epigenomesQ29615565
Identification of functional elements and regulatory circuits by Drosophila modENCODEQ29617551
The NIH Roadmap Epigenomics Mapping ConsortiumQ29619856
ENCODE data at the ENCODE portalQ31015496
ENCODE whole-genome data in the UCSC Genome Browser: update 2012.Q34072582
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome positionQ34375601
ArrayExpress update--simplifying data submissionsQ34445786
A comparative encyclopedia of DNA elements in the mouse genomeQ34700119
Database resources of the National Center for Biotechnology InformationQ57444435
P921main subjectmetadataQ180160
P577publication date2016-03-15
P1433published inDatabaseQ5227381
P1476titlePrinciples of metadata organization at the ENCODE data coordination center.
P478volume2016

Reverse relations

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Q31105044SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis
Q36344979SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata
Q90665789Ten simple rules for providing effective bioinformatics research support
Q91372436The ENCODE Portal as an Epigenomics Resource
Q47109257The Encyclopedia of DNA elements (ENCODE): data portal update
Q90617765The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
Q64057073VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer
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Q47294799circlncRNAnet: An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs

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