| scholarly article | Q13442814 |
| editorial | Q871232 |
| P8978 | DBLP publication ID | journals/bmcbi/RaynerRSCFHILMMPQSSWWWPSBB06 |
| P6179 | Dimensions Publication ID | 1016821219 |
| P356 | DOI | 10.1186/1471-2105-7-489 |
| P3181 | OpenCitations bibliographic resource ID | 154744 |
| P932 | PMC publication ID | 1687205 |
| P698 | PubMed publication ID | 17087822 |
| P5875 | ResearchGate publication ID | 6708955 |
| P50 | author | John Quackenbush | Q6253638 |
| Philippe Rocca-Serra | Q28364404 | ||
| Alvis Brazma | Q29840681 | ||
| Ugis Sarkans | Q29840685 | ||
| Gavin Sherlock | Q29840687 | ||
| Rafael Irizarry | Q39073664 | ||
| Helen Parkinson | Q47502891 | ||
| Tim Rayner | Q47502905 | ||
| Paul Spellman | Q59752875 | ||
| Christian J Stoeckert | Q67220657 | ||
| Patricia L Whetzel | Q106475699 | ||
| P2093 | author name string | Catherine A Ball | |
| Helen C Causton | |||
| Joseph White | |||
| Michael Miller | |||
| Anna Farne | |||
| Ele Holloway | |||
| Kjell Petersen | |||
| Farrell Wymore | |||
| Junmin Liu | |||
| Donald S Maier | |||
| P2860 | cites work | The Stanford Microarray Database accommodates additional microarray platforms and data formats | Q24792881 |
| NCBI GEO: mining millions of expression profiles--database and tools | Q24793432 | ||
| ArrayExpress--a public repository for microarray gene expression data at the EBI | Q24794803 | ||
| Design and implementation of microarray gene expression markup language (MAGE-ML) | Q24803717 | ||
| Submission of microarray data to public repositories | Q24803791 | ||
| Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics | Q24803868 | ||
| MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data | Q24814792 | ||
| Minimum information about a microarray experiment (MIAME)-toward standards for microarray data | Q27860569 | ||
| TM4: a free, open-source system for microarray data management and analysis | Q29547339 | ||
| J-Express: exploring gene expression data using Java | Q30647821 | ||
| Microarray data assembler | Q30757752 | ||
| The MGED Ontology: a resource for semantics-based description of microarray experiments | Q38409679 | ||
| RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies. | Q38462894 | ||
| The JigCell model builder: a spreadsheet interface for creating biochemical reaction network models. | Q44924132 | ||
| The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics | Q56889083 | ||
| Microarray standards at last | Q59094145 | ||
| A status report on MAGE | Q81098866 | ||
| P275 | copyright license | Creative Commons Attribution 2.0 Generic | Q19125117 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 489 | |
| P577 | publication date | 2006-01-01 | |
| P1433 | published in | BMC Bioinformatics | Q4835939 |
| P1476 | title | A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB | |
| P478 | volume | 7 |
| Q47773339 | A Children's Oncology Group and TARGET initiative exploring the genetic landscape of Wilms tumor. |
| Q33487078 | A System for Information Management in BioMedical Studies--SIMBioMS. |
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| Q47163193 | A document-centric approach for developing the tolAPC ontology |
| Q35698739 | A general concept for consistent documentation of computational analyses. |
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| Q33264889 | ArrayExpress--a public database of microarray experiments and gene expression profiles |
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