Making a long story short: noncoding RNAs and chromosome change

scientific article

Making a long story short: noncoding RNAs and chromosome change is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1038/HDY.2011.104
P2888exact matchhttps://scigraph.springernature.com/pub.10.1038/hdy.2011.104
P8608Fatcat IDrelease_pgtvyl3hbjhwxkasb7vios73o4
P932PMC publication ID3238116
P698PubMed publication ID22072070
P5875ResearchGate publication ID51788886

P2093author name stringJ D Brown
S E Mitchell
R J O'Neill
P2860cites workIdentification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectQ21061203
Species-specific shifts in centromere sequence composition are coincident with breakpoint reuse in karyotypically divergent lineagesQ21092868
LINE retrotransposon RNA is an essential structural and functional epigenetic component of a core neocentromeric chromatinQ21145016
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and developmentQ21184019
Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemiaQ24539231
microRNAs exhibit high frequency genomic alterations in human cancerQ24546369
Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancersQ24603754
Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancersQ24625794
The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicingQ24628997
Heterochromatin and RNAi are required to establish CENP-A chromatin at centromeresQ24654940
Centromere RNA is a key component for the assembly of nucleoproteins at the nucleolus and centromereQ24684130
Evolutionary conserved chromosomal segments in the human karyotype are bounded by unstable chromosome bands.Q52841640
SUMOylation promotes de novo targeting of HP1α to pericentric heterochromatinQ57549485
Dissecting the mammalian genome – new insights into chromosomal evolutionQ61893762
A model for the involvement of the small nucleolar RNA (U3) in processing eukaryotic ribosomal RNAQ72710383
Hypomethylation of subtelomeric regions in ICF syndrome is associated with abnormally short telomeres and enhanced transcription from telomeric regionsQ81466848
A new class of retroviral and satellite encoded small RNAs emanates from mammalian centromeresQ82224945
Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeatsQ24813550
Expression of P. falciparum var genes involves exchange of the histone variant H2A.Z at the promoterQ27312199
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14Q27860849
Yos9p detects and targets misfolded glycoproteins for ER-associated degradationQ27933494
Spt2p defines a new transcription-dependent gross chromosomal rearrangement pathwayQ27938023
A species of small antisense RNA in posttranscriptional gene silencing in plantsQ28146107
A soluble ribonucleic acid intermediate in protein synthesisQ28182656
The small RNA profile during Drosophila melanogaster developmentQ28201894
RNA interference is required for normal centromere function in fission yeastQ28202789
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAiQ28218870
Regulation of apoptosis by alternative pre-mRNA splicingQ28259246
Are snRNPs involved in splicing?Q28281898
Discrete small RNA-generating loci as master regulators of transposon activity in DrosophilaQ28292093
A human snoRNA with microRNA-like functionsQ28301613
DNA binding of centromere protein C (CENPC) is stabilized by single-stranded RNAQ28472760
The non-coding Air RNA is required for silencing autosomal imprinted genesQ28504980
WDHD1 modulates the post-transcriptional step of the centromeric silencing pathwayQ28585218
Evolution and functions of long noncoding RNAsQ29614331
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).Q30436133
Chromosome size in diploid eukaryotic species centers on the average length with a conserved boundaryQ30500341
Meiotic recombination hotspots of fission yeast are directed to loci that express non-coding RNA.Q33358102
Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary noveltyQ33486715
The two stem cell microRNA gene clusters C19MC and miR-371-3 are activated by specific chromosomal rearrangements in a subgroup of thyroid adenomasQ33538051
Chromosomes, conflict, and epigenetics: chromosomal speciation revisitedQ33570930
siRNA-mediated methylation of Arabidopsis telomeresQ33604864
3D imaging of telomeres and nuclear architecture: An emerging tool of 3D nano-morphology-based diagnosisQ33698325
Discovery of recurrent t(6;7)(p25.3;q32.3) translocations in ALK-negative anaplastic large cell lymphomas by massively parallel genomic sequencingQ33732485
AID induces double-strand breaks at immunoglobulin switch regions and c-MYC causing chromosomal translocations in yeast THO mutantsQ33839428
Fragile regions and not functional constraints predominate in shaping gene organization in the genus DrosophilaQ34018323
Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparumQ34055162
Short RNA duplexes produced by hydrolysis with Escherichia coli RNase III mediate effective RNA interference in mammalian cellsQ34098170
Sequencing of a rice centromere uncovers active genesQ34289102
Dynamics of mammalian chromosome evolution inferred from multispecies comparative mapsQ34436484
Epigenetic engineering shows H3K4me2 is required for HJURP targeting and CENP-A assembly on a synthetic human kinetochoreQ34513328
Cell-type-specific replication initiation programs set fragility of the FRA3B fragile siteQ34626544
Regulation of X-chromosome inactivation by the X-inactivation centre.Q34629253
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promotersQ34629890
CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR.Q34674382
Accumulation of small murine minor satellite transcripts leads to impaired centromeric architecture and functionQ34695366
Determinants of R-loop formation at convergent bidirectionally transcribed trinucleotide repeatsQ34699848
Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX.Q34841266
An autosomal locus that controls chromosome-wide replication timing and mono-allelic expressionQ34994794
RNA interference, transposons, and the centromereQ35059339
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolutionQ35146467
Frodos found: Behold the CENP-a "Ring" bearersQ35335741
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAsQ35557707
BRCA1 tumour suppression occurs via heterochromatin-mediated silencing.Q35618582
Is mammalian chromosomal evolution driven by regions of genome fragility?Q35629768
Centromere dynamics and chromosome evolution in marsupials.Q35896978
Small RNAs: classification, biogenesis, and function.Q36063097
Functional elements residing within satellite DNAsQ36303797
Pericentric heterochromatin: dynamic organization during early development in mammalsQ36933863
TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeresQ37359903
The long and the short of noncoding RNAsQ37485208
The role of ncRNA in centromeres: a lesson from marsupialsQ37517420
Centromere-encoded RNAs are integral components of the maize kinetochore.Q37619449
TERRA biogenesis, turnover and implications for function.Q37775273
MicroRNA profiling in cancerQ37869934
Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cellsQ38328909
MicroRNA29a regulates the expression of the nuclear oncogene Ski.Q39522007
53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stressQ39593027
Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.Q39681612
Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regionsQ40019147
Engineering translocations with delayed replication: evidence for cis control of chromosome replication timingQ40382423
Rodent common fragile sites: are they conserved? Evidence from mouse and rat.Q41261614
Involvement of RNA in the synthesis of proteinsQ41563827
Sap1 promotes the association of the replication fork protection complex with chromatin and is involved in the replication checkpoint in Schizosaccharomyces pombeQ42952151
Conservation of aphidicolin-induced fragile sites in Papionini (Primates) species and humans.Q45124914
Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposonQ48288576
A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development.Q51897792
Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites.Q52563158
Tiny RNAs associated with transcription start sites in animals.Q52697120
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)42-49
P577publication date2011-11-09
P1433published inHeredityQ2261546
P1476titleMaking a long story short: noncoding RNAs and chromosome change
P478volume108

Reverse relations

cites work (P2860)
Q91639823A centromere satellite concomitant with extensive karyotypic diversity across the Peromyscus genus defies predictions of molecular drive
Q36023319Assessing Recent Selection and Functionality at Long Noncoding RNA Loci in the Mouse Genome
Q60938313Centromere and Pericentromere Transcription: Roles and Regulation … in Sickness and in Health
Q38079476Charity begins at home: non-coding RNA functions in DNA repair
Q48297407Epigenetic Regulation of Centromere Chromatin Stability by Dietary and Environmental Factors
Q47142412FA-SAT Is an Old Satellite DNA Frozen in Several Bilateria Genomes.
Q38382440Genomic instability: Crossing pathways at the origin of structural and numerical chromosome changes
Q43005221Molecular cytogenetics: karyotype evolution, phylogenomics and future prospects.
Q64079000RPITER: A Hierarchical Deep Learning Framework for ncRNA⁻Protein Interaction Prediction
Q41665024Satellite DNA as a driver of population divergence in the red flour beetle Tribolium castaneum.
Q38570602Satellite non-coding RNAs: the emerging players in cells, cellular pathways and cancer
Q90133972Seq'ing identity and function in a repeat-derived noncoding RNA world
Q47103604The long non-coding RNA PARTICLE is associated with WWOX and the absence of FRA16D breakage in osteosarcoma patients
Q48248558Transposable elements: genome innovation, chromosome diversity, and centromere conflict.
Q34449777Unique small RNA signatures uncovered in the tammar wallaby genome
Q37391186Visualizing Long Noncoding RNAs on Chromatin

Search more.