| scholarly article | Q13442814 |
| P2093 | author name string | Zhiping Weng | |
| Richard M Myers | |||
| Nathan D Trinklein | |||
| David S Johnson | |||
| Catherine Medina | |||
| Hennady Shulha | |||
| Jane M Landolin | |||
| Shelly F Aldred | |||
| P2860 | cites work | Tissue-specific regulatory elements in mammalian promoters | Q38305745 |
| Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification | Q38346312 | ||
| Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver | Q39875092 | ||
| Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines | Q41708885 | ||
| Computational identification and functional validation of regulatory motifs in cartilage-expressed genes. | Q41736027 | ||
| DBTSS: database of transcription start sites, progress report 2008. | Q43032565 | ||
| Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. | Q52603460 | ||
| HNF4: A central regulator of hepatocyte differentiation and function | Q58407206 | ||
| Fine structure genetic analysis of a beta-globin promoter | Q68722751 | ||
| Functional architecture and evolution of transcriptional elements that drive gene coexpression | Q81301649 | ||
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project | Q21061203 | ||
| GENCODE: producing a reference annotation for ENCODE | Q21184138 | ||
| A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters | Q24537436 | ||
| TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes | Q24538709 | ||
| A gene atlas of the mouse and human protein-encoding transcriptomes | Q24568043 | ||
| Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage | Q24616834 | ||
| Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals | Q24630840 | ||
| Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1 | Q24673569 | ||
| Integrative annotation of 21,037 human genes validated by full-length cDNA clones | Q24805388 | ||
| Nonlinear partial differential equations and applications: Genomic analysis of the host response to hepatitis C virus infection | Q27473003 | ||
| The transcriptional landscape of the mammalian genome | Q27861110 | ||
| DNA binding sites: representation and discovery | Q28144459 | ||
| Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs) | Q28757561 | ||
| Detection of functional DNA motifs via statistical over-representation | Q28775981 | ||
| Genome-wide mapping of in vivo protein-DNA interactions | Q29547162 | ||
| A global map of p53 transcription-factor binding sites in the human genome | Q29614400 | ||
| Information content of binding sites on nucleotide sequences | Q29614588 | ||
| In vivo enhancer analysis of human conserved non-coding sequences | Q29616554 | ||
| Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome | Q29616819 | ||
| Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data | Q31036404 | ||
| De novo discovery of a tissue-specific gene regulatory module in a chordate | Q34056053 | ||
| Disruption of CREB function in brain leads to neurodegeneration | Q34124865 | ||
| Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome | Q34324178 | ||
| Identification and functional analysis of human transcriptional promoters | Q34374098 | ||
| DNA motifs in human and mouse proximal promoters predict tissue-specific expression | Q34597423 | ||
| Neuronal competition and selection during memory formation. | Q34620892 | ||
| Transcription factor binding and modified histones in human bidirectional promoters | Q34637346 | ||
| CREB, neurogenesis and depression | Q36944859 | ||
| P433 | issue | 7 | |
| P304 | page(s) | 890-898 | |
| P577 | publication date | 2010-05-25 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Sequence features that drive human promoter function and tissue specificity | |
| P478 | volume | 20 |
| Q93009109 | A comparison of curated gene sets versus transcriptomics-derived gene signatures for detecting pathway activation in immune cells |
| Q38771070 | A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays |
| Q21092716 | A user's guide to the encyclopedia of DNA elements (ENCODE) |
| Q41083733 | Baf60b-mediated ATM-p53 activation blocks cell identity conversion by sensing chromatin opening |
| Q57172050 | CRX directs photoreceptor differentiation by accelerating chromatin remodeling at specific target sites |
| Q38959992 | Cancer specificity of promoters of the genes controlling cell proliferation. |
| Q45885614 | Cancer-specific promoters for expression-targeted gene therapy: ran, brms1 and mcm5. |
| Q22122000 | Comparative studies of gene expression and the evolution of gene regulation |
| Q55515822 | Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species. |
| Q28315762 | CpG islands and the regulation of transcription |
| Q34826504 | DNA methylation of alternative promoters directs tissue specific expression of Epac2 isoforms |
| Q42917897 | Decoding a signature-based model of transcription cofactor recruitment dictated by cardinal cis-regulatory elements in proximal promoter regions. |
| Q90663956 | Determinants of enhancer and promoter activities of regulatory elements |
| Q36012656 | Diametrically opposite methylome-transcriptome relationships in high- and low-CpG promoter genes in postmitotic neural rat tissue. |
| Q35120737 | Discovery of SMAD4 promoters, transcription factor binding sites and deletions in juvenile polyposis patients |
| Q39588955 | Effects of DNA methylation and histone modification on differentiation-associated gene expression in ES, NIH3T3, and NIT-1. |
| Q38171275 | Epigenetic landscape for initiation of DNA replication |
| Q37970038 | Epigenetic regulation of self-renewal and fate determination in neural stem cells |
| Q38750145 | Expression of metastasis suppressor gene AES driven by a Yin Yang (YY) element in a CpG island promoter and transcription factor YY2. |
| Q35128053 | FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells |
| Q36378033 | Functional analysis of transcription factor binding sites in human promoters |
| Q56985332 | Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals |
| Q34000374 | Fundamental diversity of human CpG islands at multiple biological levels |
| Q37504912 | Genome-wide analysis of promoters: clustering by alignment and analysis of regular patterns |
| Q36233375 | Genome-wide mapping of autonomous promoter activity in human cells |
| Q36084287 | Genomic approaches for understanding the genetics of complex disease |
| Q38019305 | Genomic approaches towards finding cis-regulatory modules in animals |
| Q38264460 | HMGA proteins as modulators of chromatin structure during transcriptional activation. |
| Q34729636 | High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation |
| Q37148610 | High-throughput functional comparison of promoter and enhancer activities |
| Q34350068 | High-throughput functional testing of ENCODE segmentation predictions. |
| Q34130817 | Human Vav1 expression in hematopoietic and cancer cell lines is regulated by c-Myb and by CpG methylation |
| Q47203571 | Local sequence features that influence AP-1 cis-regulatory activity |
| Q33764215 | MOF-associated complexes ensure stem cell identity and Xist repression. |
| Q34354921 | Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks. |
| Q36127883 | Ovine HSP90AA1 gene promoter: functional study and epigenetic modifications. |
| Q39283934 | Predicting cell-type-specific gene expression from regions of open chromatin |
| Q42137507 | Predicting promoter activities of primary human DNA sequences |
| Q36101103 | Proline oxidase promotes tumor cell survival in hypoxic tumor microenvironments |
| Q34107760 | Relating gene expression evolution with CpG content changes |
| Q48257532 | Relationship between histone modifications and transcription factor binding is protein family specific |
| Q57274692 | Response to Comment on "Positive Selection of Tyrosine Loss in Metazoan Evolution" |
| Q52936646 | SMAD4 gene promoter mutations in patients with thyroid tumors. |
| Q37697916 | Sequence signatures extracted from proximal promoters can be used to predict distal enhancers |
| Q40258257 | Species differential regulation of COX2 can be described by an NFκB-dependent logic AND gate |
| Q37658966 | Systematic dissection of genomic features determining transcription factor binding and enhancer function |
| Q89982549 | The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution |
| Q34193554 | The influence of cis-regulatory elements on DNA methylation fidelity |
| Q30562517 | Understanding transcriptional regulation by integrative analysis of transcription factor binding data. |
| Q33631937 | Use of phage display to identify novel mineralocorticoid receptor-interacting proteins. |
| Q50074557 | ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream of transcription start sites at the majority of CpG island promoters. |
Search more.