Binary Interval Search: a scalable algorithm for counting interval intersections

scientific article

Binary Interval Search: a scalable algorithm for counting interval intersections is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/LayerSRHQ13
P356DOI10.1093/BIOINFORMATICS/BTS652
P8608Fatcat IDrelease_ajclnjhvozf4jkp6jfuds7ztki
P932PMC publication ID3530906
P698PubMed publication ID23129298
P5875ResearchGate publication ID232918560

P50authorAaron R QuinlanQ37392647
Kevin SkadronQ29387583
P2093author name stringGabriel Robins
Ira M Hall
Ryan M Layer
P2860cites workBEDOPS: high-performance genomic feature operationsQ36076319
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectQ21061203
A map of human genome variation from population-scale sequencingQ24617794
The human genome browser at UCSCQ24672361
The Sequence Alignment/Map format and SAMtoolsQ27860966
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
Finding repeated elementsQ29400650
BEDTools: a flexible suite of utilities for comparing genomic featuresQ29547332
Galaxy: a platform for interactive large-scale genome analysisQ29547494
fjoin: simple and efficient computation of feature overlapsQ33261395
Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databasesQ33269651
Exploring massive, genome scale datasets with the GenometriCorr packageQ34302131
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)1-7
P577publication date2012-11-04
P1433published inBioinformaticsQ4914910
P1476titleBinary Interval Search: a scalable algorithm for counting interval intersections
P478volume29

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cites work (P2860)
Q56531089A Parallel Algorithm for $N$ -Way Interval Set Intersection
Q34568706Bioinformatic analysis of cis-regulatory interactions between progesterone and estrogen receptors in breast cancer.
Q41767972Cosi2: an efficient simulator of exact and approximate coalescent with selection
Q38988680ERGC: an efficient referential genome compression algorithm
Q64057014Efficient Genomic Interval Queries Using Augmented Range Trees
Q45069967Epigenomic annotation-based interpretation of genomic data: from enrichment analysis to machine learning.
Q47194739GIGGLE: a search engine for large-scale integrated genome analysis.
Q36406216GINOM: A statistical framework for assessing interval overlap of multiple genomic features
Q30409886Mosaic copy number variation in human neurons
Q38835125NRGC: a novel referential genome compression algorithm
Q27335944Reorganization of chromosome architecture in replicative cellular senescence
Q34736508The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment

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