| scholarly article | Q13442814 |
| P50 | author | Gert Jan C Veenstra | Q42269289 |
| Simon J van Heeringen | Q57078080 | ||
| P2093 | author name string | Ozren Bogdanović | |
| P2860 | cites work | Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project | Q21061203 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) | Q21092716 | ||
| Targeting of de novo DNA methylation throughout the Oct-4 gene regulatory region in differentiating embryonic stem cells | Q21142611 | ||
| The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain | Q22065852 | ||
| The genome of the Western clawed frog Xenopus tropicalis | Q22065897 | ||
| Crystal structure of the nucleosome core particle at 2.8 A resolution | Q22122355 | ||
| Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1 | Q24316558 | ||
| Core transcriptional regulatory circuitry in human embryonic stem cells | Q24322016 | ||
| An operational definition of epigenetics | Q24568002 | ||
| Covalent histone modifications--miswritten, misinterpreted and mis-erased in human cancers | Q24605342 | ||
| Genome-wide maps of chromatin state in pluripotent and lineage-committed cells | Q24632506 | ||
| Mediator and cohesin connect gene expression and chromatin architecture | Q24632695 | ||
| Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements | Q24797287 | ||
| Xenopus research: metamorphosed by genetics and genomics | Q26860914 | ||
| Role of the polycomb protein EED in the propagation of repressive histone marks | Q27657483 | ||
| Histone methylation by PRC2 is inhibited by active chromatin marks | Q27667743 | ||
| High-resolution profiling of histone methylations in the human genome | Q27860906 | ||
| The language of covalent histone modifications | Q27860931 | ||
| Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors | Q27860937 | ||
| A bivalent chromatin structure marks key developmental genes in embryonic stem cells | Q27860977 | ||
| Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals | Q28131802 | ||
| Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome | Q28131828 | ||
| ChIP-seq accurately predicts tissue-specific activity of enhancers | Q28235102 | ||
| Histone modifications at human enhancers reflect global cell-type-specific gene expression | Q28238467 | ||
| TBP-related factors: a paradigm of diversity in transcription initiation | Q28241935 | ||
| Somatic linker histones cause loss of mesodermal competence in Xenopus | Q28249850 | ||
| What an epigenome remembers | Q37775592 | ||
| The ground state of pluripotency. | Q37775668 | ||
| Methods for making induced pluripotent stem cells: reprogramming à la carte | Q37845645 | ||
| Ubiquitous MyoD transcription at the midblastula transition precedes induction-dependent MyoD expression in presumptive mesoderm of X. laevis | Q38334831 | ||
| Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo | Q38339142 | ||
| Chd1 regulates open chromatin and pluripotency of embryonic stem cells | Q38352404 | ||
| Kruppel-like factor 2 cooperates with the ETS family protein ERG to activate Flk1 expression during vascular development | Q38356326 | ||
| Epigenetic landscaping during hESC differentiation to neural cells. | Q39844005 | ||
| A model for transmission of the H3K27me3 epigenetic mark | Q39927750 | ||
| Chromatin signature of embryonic pluripotency is established during genome activation | Q40694812 | ||
| Programming of a repressed but committed chromatin structure during early development | Q40789684 | ||
| MyoD expression in the forming somites is an early response to mesoderm induction in Xenopus embryos | Q40820088 | ||
| Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation | Q42239046 | ||
| A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts. | Q42662583 | ||
| Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency | Q43194593 | ||
| Incomplete RNA polymerase II phosphorylation in Xenopus laevis early embryos | Q43739540 | ||
| The events of the midblastula transition in Xenopus are regulated by changes in the cell cycle | Q43959579 | ||
| Refinement of gene expression patterns in the early Xenopus embryo | Q45030397 | ||
| Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells | Q46678698 | ||
| xDnmt1 regulates transcriptional silencing in pre-MBT Xenopus embryos independently of its catalytic function | Q46729896 | ||
| An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation. | Q47073861 | ||
| Synthesis of heterogeneous mRNA-like RNA and low-molecular-weight RNA before the midblastula transition in embryos of Xenopus laevis | Q47191460 | ||
| Chromatin transitions during early Xenopus embryogenesis: changes in histone H4 acetylation and in linker histone type. | Q49129010 | ||
| Cell fate potential of human pluripotent stem cells is encoded by histone modifications. | Q51862136 | ||
| Beta-catenin/Tcf-regulated transcription prior to the midblastula transition. | Q52112637 | ||
| Zygotic transcription is required to block a maternal program of apoptosis in Xenopus embryos. | Q52192776 | ||
| Onset of 5 S RNA gene regulation during Xenopus embryogenesis. | Q52279853 | ||
| Constitutive genomic methylation during embryonic development of Xenopus | Q77110313 | ||
| Jmjd1a and Jmjd2c histone H3 Lys 9 demethylases regulate self-renewal in embryonic stem cells | Q28253382 | ||
| The maternal histone H1 variant, H1M (B4 protein), is the predominant H1 histone in Xenopus pregastrula embryos | Q28259771 | ||
| Coordinated regulation of transcriptional repression by the RBP2 H3K4 demethylase and Polycomb-Repressive Complex 2 | Q28280326 | ||
| Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst | Q28280404 | ||
| Genomic DNA methylation: the mark and its mediators | Q28290773 | ||
| Kaiso is a genome-wide repressor of transcription that is essential for amphibian development | Q28293919 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Stage-specific histone modification profiles reveal global transitions in the Xenopus embryonic epigenome | Q28479255 | ||
| The murine polycomb group protein Eed is required for global histone H3 lysine-27 methylation | Q28508260 | ||
| beta-Catenin primes organizer gene expression by recruiting a histone H3 arginine 8 methyltransferase, Prmt2 | Q28508693 | ||
| Neurogenin and NeuroD direct transcriptional targets and their regulatory enhancers | Q28508842 | ||
| Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells | Q28585926 | ||
| MSX1 cooperates with histone H1b for inhibition of transcription and myogenesis | Q28591024 | ||
| An oestrogen-receptor-α-bound human chromatin interactome | Q29541719 | ||
| The ENCODE (ENCyclopedia Of DNA Elements) Project | Q29547219 | ||
| Polycomb complexes repress developmental regulators in murine embryonic stem cells | Q29547274 | ||
| How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers | Q29547350 | ||
| The Polycomb complex PRC2 and its mark in life | Q29547358 | ||
| Mapping and analysis of chromatin state dynamics in nine human cell types | Q29547552 | ||
| A unique chromatin signature uncovers early developmental enhancers in humans | Q29614327 | ||
| Widespread transcription at neuronal activity-regulated enhancers | Q29614330 | ||
| Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds | Q29614344 | ||
| Discovery and characterization of chromatin states for systematic annotation of the human genome | Q29614411 | ||
| Genomic maps and comparative analysis of histone modifications in human and mouse | Q29614418 | ||
| A high-resolution map of active promoters in the human genome | Q29614431 | ||
| Mechanisms of polycomb gene silencing: knowns and unknowns | Q29614511 | ||
| Chromatin signatures of pluripotent cell lines | Q29614675 | ||
| Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells. | Q29614677 | ||
| Naive and primed pluripotent states | Q29616638 | ||
| Induction of pluripotent stem cells from primary human fibroblasts with only Oct4 and Sox2 | Q29617098 | ||
| Identification of functional elements and regulatory circuits by Drosophila modENCODE | Q29617551 | ||
| Convergence of a head-field selector Otx2 and Notch signaling: a mechanism for lens specification | Q30414851 | ||
| Ring1B is crucial for the regulation of developmental control genes and PRC1 proteins but not X inactivation in embryonic cells | Q30480516 | ||
| Characterization of somatic cell nuclear reprogramming by oocytes in which a linker histone is required for pluripotency gene reactivation | Q30493994 | ||
| Massive transcriptional start site analysis of human genes in hypoxia cells | Q33411670 | ||
| TBP2 is a substitute for TBP in Xenopus oocyte transcription | Q33489850 | ||
| ChIP-chip designs to interrogate the genome of Xenopus embryos for transcription factor binding and epigenetic regulation | Q33526290 | ||
| Histone H3 lysine 27 methylation asymmetry on developmentally-regulated promoters distinguish the first two lineages in mouse preimplantation embryos | Q33531789 | ||
| Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo | Q33580177 | ||
| Unlocking the secrets of the genome | Q33745487 | ||
| Remodeling of regulatory nucleoprotein complexes on the Xenopus hsp70 promoter during meiotic maturation of the Xenopus oocyte | Q33887102 | ||
| Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells | Q33926822 | ||
| The Xenopus MyoD gene: an unlocalised maternal mRNA predates lineage-restricted expression in the early embryo. | Q33932061 | ||
| Distinct histone modifications in stem cell lines and tissue lineages from the early mouse embryo | Q33934698 | ||
| Translation of maternal TATA-binding protein mRNA potentiates basal but not activated transcription in Xenopus embryos at the midblastula transition. | Q33960538 | ||
| Systematic protein location mapping reveals five principal chromatin types in Drosophila cells | Q34141226 | ||
| A major developmental transition in early xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage | Q34249607 | ||
| A major developmental transition in early Xenopus embryos: II. Control of the onset of transcription | Q34279768 | ||
| Competition between chromatin and transcription complex assembly regulates gene expression during early development | Q34341024 | ||
| G9a-mediated irreversible epigenetic inactivation of Oct-3/4 during early embryogenesis. | Q34485045 | ||
| Nucleotide composition-linked divergence of vertebrate core promoter architecture. | Q34605608 | ||
| Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis | Q34619418 | ||
| Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination | Q34673352 | ||
| The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. | Q34976601 | ||
| The maternal-to-zygotic transition: a play in two acts | Q34998975 | ||
| A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos. | Q35003305 | ||
| The genomic landscape of histone modifications in human T cells | Q35094537 | ||
| The methyl-CpG binding domain and the evolving role of DNA methylation in animals | Q35113394 | ||
| Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions | Q35145499 | ||
| Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis | Q35145517 | ||
| Transient depletion of xDnmt1 leads to premature gene activation in Xenopus embryos | Q35186046 | ||
| An essential role for transcription before the MBT in Xenopus laevis | Q35189496 | ||
| Spatio-temporal plasticity in chromatin organization in mouse cell differentiation and during Drosophila embryogenesis | Q35815737 | ||
| The polycomb group protein Suz12 is required for embryonic stem cell differentiation | Q35856936 | ||
| Differential association of HMG1 and linker histones B4 and H1 with dinucleosomal DNA: structural transitions and transcriptional repression | Q35908824 | ||
| Covalent modifications of histones during development and disease pathogenesis | Q36994153 | ||
| Long-range chromosomal interactions and gene regulation | Q37123083 | ||
| DNA methylation and methyl-CpG binding proteins: developmental requirements and function | Q37311875 | ||
| Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis. | Q37395186 | ||
| Molecules that promote or enhance reprogramming of somatic cells to induced pluripotent stem cells | Q37430454 | ||
| Predictive chromatin signatures in the mammalian genome | Q37609802 | ||
| Constraints on transcriptional activator function contribute to transcriptional quiescence during early Xenopus embryogenesis | Q37696335 | ||
| P433 | issue | 3 | |
| P304 | page(s) | 192-206 | |
| P577 | publication date | 2011-12-27 | |
| P1433 | published in | Genesis | Q5532784 |
| P1476 | title | The epigenome in early vertebrate development | |
| P478 | volume | 50 |
| Q93070840 | A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis |
| Q89591234 | Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18 |
| Q34507907 | CBS: an open platform that integrates predictive methods and epigenetics information to characterize conserved regulatory features in multiple Drosophila genomes |
| Q39038832 | Cell Cycle Remodeling and Zygotic Gene Activation at the Midblastula Transition |
| Q91511371 | DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain |
| Q34723952 | Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish |
| Q35624903 | Establishing pluripotency in early development |
| Q45978548 | Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program. |
| Q90674681 | Histone Modifications of H3K4me3, H3K9me3 and Lineage Gene Expressions in Chimeric Mouse Embryo |
| Q37367234 | Hypoxia increases genome-wide bivalent epigenetic marking by specific gain of H3K27me3. |
| Q38924304 | NFATc2 mediates epigenetic modification of dendritic cell cytokine and chemokine responses to dectin-1 stimulation. |
| Q36975748 | Polycomb repressive complex PRC2 regulates Xenopus retina development downstream of Wnt/β-catenin signaling |
| Q37614937 | Principles of nucleation of H3K27 methylation during embryonic development. |
| Q27346654 | Snail2/Slug cooperates with Polycomb repressive complex 2 (PRC2) to regulate neural crest development |
| Q41172917 | Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation |
| Q37979764 | Xenopus white papers and resources: folding functional genomics and genetics into the frog |
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