| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/SongS11 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTR030 |
| P932 | PMC publication ID | 3051331 |
| P698 | PubMed publication ID | 21325299 |
| P5875 | ResearchGate publication ID | 49839961 |
| P50 | author | Andrew D. Smith | Q38317820 |
| Qiang Song | Q58102015 | ||
| P2860 | cites work | Genome-wide maps of chromatin state in pluripotent and lineage-committed cells | Q24632506 |
| High-resolution profiling of histone methylations in the human genome | Q27860906 | ||
| Chromatin modifications and their function | Q27861067 | ||
| A tutorial on hidden Markov models and selected applications in speech recognition | Q29396607 | ||
| A clustering approach for identification of enriched domains from histone modification ChIP-Seq data | Q33464035 | ||
| HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data | Q33624191 | ||
| Computation for ChIP-seq and RNA-seq studies | Q33999125 | ||
| The frequency distribution of the difference between two Poisson variates belonging to different populations | Q83246765 | ||
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 870-871 | |
| P577 | publication date | 2011-02-16 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | Identifying dispersed epigenomic domains from ChIP-Seq data | |
| P478 | volume | 27 |
| Q31141946 | A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets |
| Q38695905 | A comprehensive comparison of tools for differential ChIP-seq analysis. |
| Q30583441 | A novel Bayesian change-point algorithm for genome-wide analysis of diverse ChIPseq data types |
| Q35851979 | A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics. |
| Q35641733 | A stationary wavelet entropy-based clustering approach accurately predicts gene expression |
| Q34471128 | A wavelet approach to detect enriched regions and explore epigenomic landscapes. |
| Q30636277 | Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data |
| Q36034789 | Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage |
| Q33970440 | An integrated strategy for identification of both sharp and broad peaks from next-generation sequencing data |
| Q38429129 | Bi-directional and shared epigenomic signatures following proton and 56Fe irradiation |
| Q51278941 | BroadPeak: a novel algorithm for identifying broad peaks in diffuse ChIP-seq datasets. |
| Q28487107 | Cell reprogramming requires silencing of a core subset of polycomb targets |
| Q31132639 | ChIP-seq Data Processing for PcG Proteins and Associated Histone Modifications. |
| Q34368738 | ChIPnorm: a statistical method for normalizing and identifying differential regions in histone modification ChIP-seq libraries. |
| Q33715661 | Characterising ChIP-seq binding patterns by model-based peak shape deconvolution. |
| Q36182434 | Chromatin Biology Impacts Adaptive Evolution of Filamentous Plant Pathogens |
| Q35598507 | Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq). |
| Q42778020 | Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers. |
| Q46223387 | Cohesin Loss Eliminates All Loop Domains |
| Q30414675 | Combinatorial epigenetic patterns as quantitative predictors of chromatin biology |
| Q42291852 | Common nonmutational NOTCH1 activation in chronic lymphocytic leukemia |
| Q33886586 | Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription |
| Q34373648 | Copy-number-aware differential analysis of quantitative DNA sequencing data |
| Q40222482 | DNA methylation changes in plasticity genes accompany the formation and maintenance of memory. |
| Q30796539 | DNA methylation on N(6)-adenine in mammalian embryonic stem cells |
| Q35968181 | Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains |
| Q40232961 | Detecting differential peaks in ChIP-seq signals with ODIN. |
| Q57991435 | Differential analysis of chromatin accessibility and histone modifications for predicting mouse developmental enhancers |
| Q39035875 | Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells |
| Q41854542 | EMdeCODE: a novel algorithm capable of reading words of epigenetic code to predict enhancers and retroviral integration sites and to identify H3R2me1 as a distinctive mark of coding versus non-coding genes |
| Q90208763 | Enhanced nucleotide chemistry and toehold nanotechnology reveals lncRNA spreading on chromatin |
| Q41001736 | Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations |
| Q36807846 | Epigenetic and transcriptional signatures of stable versus plastic differentiation of proinflammatory γδ T cell subsets |
| Q34407547 | Epigenetic dysregulation by nickel through repressive chromatin domain disruption |
| Q34911097 | Epigenetic modifications are associated with inter-species gene expression variation in primates |
| Q47106431 | Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis |
| Q30387991 | Features that define the best ChIP-seq peak calling algorithms |
| Q36446270 | Genome-Wide Epigenetic Studies in Human Disease: A Primer on -Omic Technologies |
| Q30820486 | Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice |
| Q21183999 | Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase |
| Q36134892 | Genome-wide identification and characterisation of HOT regions in the human genome. |
| Q34806568 | Genome-wide identification of chromatin transitional regions reveals diverse mechanisms defining the boundary of facultative heterochromatin |
| Q34356312 | Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data |
| Q30252934 | Genome-wide mapping of histone H3K9me2 in acute myeloid leukemia reveals large chromosomal domains associated with massive gene silencing and sites of genome instability. |
| Q52690553 | H3K36me3-mediated mismatch repair preferentially protects actively transcribed genes from mutation. |
| Q39023626 | H3K4me2 reliably defines transcription factor binding regions in different cells |
| Q39039932 | HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics |
| Q30843060 | HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data |
| Q36110128 | Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes |
| Q42775500 | Identification of Brassinosteroid Target Genes by Chromatin Immunoprecipitation Followed by High-Throughput Sequencing (ChIP-seq) and RNA-Sequencing. |
| Q38249872 | Identifying and mitigating bias in next-generation sequencing methods for chromatin biology |
| Q35550753 | Identifying differential transcription factor binding in ChIP-seq |
| Q31107778 | Identifying peaks in *-seq data using shape information |
| Q34337209 | Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation |
| Q30663648 | Inferring nucleosome positions with their histone mark annotation from ChIP data |
| Q39450288 | Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation |
| Q35625871 | Is this the right normalization? A diagnostic tool for ChIP-seq normalization. |
| Q39216883 | Iterative Fragmentation Improves the Detection of ChIP-seq Peaks for Inactive Histone Marks |
| Q30573417 | Library preparation and data analysis packages for rapid genome sequencing |
| Q48222679 | Neuroblastoma is composed of two super-enhancer-associated differentiation states. |
| Q37149254 | Novel long noncoding RNAs are regulated by angiotensin II in vascular smooth muscle cells |
| Q39232183 | Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning |
| Q38877286 | PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX. |
| Q48258339 | Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome |
| Q30471421 | Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana |
| Q30828757 | PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data. |
| Q35956090 | Picking ChIP-seq peak detectors for analyzing chromatin modification experiments |
| Q90162875 | Polymer Modeling Predicts Chromosome Reorganization in Senescence |
| Q21563477 | Practical guidelines for the comprehensive analysis of ChIP-seq data |
| Q38660226 | Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells |
| Q30873184 | Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data |
| Q36783636 | RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments |
| Q97523462 | Regulation of plant architecture by a new histone acetyltransferase targeting gene bodies |
| Q28591651 | Rif1 maintains telomere length homeostasis of ESCs by mediating heterochromatin silencing |
| Q42696413 | Ritornello: high fidelity control-free chromatin immunoprecipitation peak calling |
| Q36021752 | Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk |
| Q34124901 | Spatial clustering for identification of ChIP-enriched regions (SICER) to map regions of histone methylation patterns in embryonic stem cells |
| Q36018352 | Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type |
| Q91688131 | TAGOOS: genome-wide supervised learning of non-coding loci associated to complex phenotypes |
| Q34222768 | The developmental potential of iPSCs is greatly influenced by reprogramming factor selection |
| Q34635618 | The patterns of histone modifications in the vicinity of transcription factor binding sites in human lymphoblastoid cell lines |
| Q55438230 | Uhrf1 regulates active transcriptional marks at bivalent domains in pluripotent stem cells through Setd1a. |
| Q90522240 | Visualization of long-lived proteins reveals age mosaicism within nuclei of postmitotic cells |
| Q30571685 | WaveSeq: a novel data-driven method of detecting histone modification enrichments using wavelets |
| Q37461589 | Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver |
| Q30980309 | groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data |
| Q35142086 | histoneHMM: Differential analysis of histone modifications with broad genomic footprints |
| Q33741818 | jMOSAiCS: joint analysis of multiple ChIP-seq datasets |
Search more.